>ref|XM_470563.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 492

 Score =  129 bits (65), Expect = 1e-26
 Identities = 149/177 (84%)
 Strand = Plus / Minus

                                                                       
Query: 100 cggctgtggaacgcttcacggcgcttcctgaccaggatctcgatctcccgcctctcctcc 159
           |||| ||||||||| || ||||||  ||| ||||| ||||||||||| ||||||||||||
Sbjct: 431 cggcggtggaacgcgtcgcggcgccgcctcaccagcatctcgatctctcgcctctcctcc 372

                                                                       
Query: 160 ctcgccatctgctgacacctgcactcggcgctgcagaacgcttgctctcccttgtacacg 219
           |||||||||||||| | || ||| || |||||||||||||| ||||| || ||||| |||
Sbjct: 371 ctcgccatctgctggctccggcattccgcgctgcagaacgcgtgctcccctttgtagacg 312

                                                                    
Query: 220 aagacgtccatgtcgccgtcgatcttcttgcagcagcataggcagcacttcaagaac 276
           || || ||||||||| ||| || |||||||  ||||||   |||||| |||||||||
Sbjct: 311 aacacatccatgtcggcgtagagcttcttgtggcagcagtagcagcagttcaagaac 255



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 380 gcctcggcgagggctgtatgatcaactggagcccgacgagctcgccgg 427
           ||||||||||  |||||||||||| | |||||||||||||||||||||
Sbjct: 136 gcctcggcgactgctgtatgatcagccggagcccgacgagctcgccgg 89

>dbj|AK063042.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-D07, full
           insert sequence
          Length = 904

 Score =  129 bits (65), Expect = 1e-26
 Identities = 149/177 (84%)
 Strand = Plus / Minus

                                                                       
Query: 100 cggctgtggaacgcttcacggcgcttcctgaccaggatctcgatctcccgcctctcctcc 159
           |||| ||||||||| || ||||||  ||| ||||| ||||||||||| ||||||||||||
Sbjct: 552 cggcggtggaacgcgtcgcggcgccgcctcaccagcatctcgatctctcgcctctcctcc 493

                                                                       
Query: 160 ctcgccatctgctgacacctgcactcggcgctgcagaacgcttgctctcccttgtacacg 219
           |||||||||||||| | || ||| || |||||||||||||| ||||| || ||||| |||
Sbjct: 492 ctcgccatctgctggctccggcattccgcgctgcagaacgcgtgctcccctttgtagacg 433

                                                                    
Query: 220 aagacgtccatgtcgccgtcgatcttcttgcagcagcataggcagcacttcaagaac 276
           || || ||||||||| ||| || |||||||  ||||||   |||||| |||||||||
Sbjct: 432 aacacatccatgtcggcgtagagcttcttgtggcagcagtagcagcagttcaagaac 376



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 380 gcctcggcgagggctgtatgatcaactggagcccgacgagctcgccgg 427
           ||||||||||  |||||||||||| | |||||||||||||||||||||
Sbjct: 257 gcctcggcgactgctgtatgatcagccggagcccgacgagctcgccgg 210

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  101 bits (51), Expect = 3e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                           
Query: 100     cggctgtggaacgcttcacggcgcttcctgaccaggatctcgatctcccgcctctcctcc 159
               |||| ||||||||| || ||||||  ||| ||||| ||||||||||| ||||||||||||
Sbjct: 4361692 cggcggtggaacgcgtcgcggcgccgcctcaccagcatctcgatctctcgcctctcctcc 4361751

                                                              
Query: 160     ctcgccatctgctgacacctgcactcggcgctgcagaacgcttgctc 206
               |||||||||||||| | || ||| || |||||||||||||| |||||
Sbjct: 4361752 ctcgccatctgctggctccggcattccgcgctgcagaacgcgtgctc 4361798



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                               
Query: 380     gcctcggcgagggctgtatgatcaactggagcccgacgagctcgccgg 427
               ||||||||||  |||||||||||| | |||||||||||||||||||||
Sbjct: 4362152 gcctcggcgactgctgtatgatcagccggagcccgacgagctcgccgg 4362199

>gb|AC079633.9|AC079633 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G08, from Chromosome 3, complete sequence
          Length = 122052

 Score =  101 bits (51), Expect = 3e-18
 Identities = 93/107 (86%)
 Strand = Plus / Minus

                                                                         
Query: 100   cggctgtggaacgcttcacggcgcttcctgaccaggatctcgatctcccgcctctcctcc 159
             |||| ||||||||| || ||||||  ||| ||||| ||||||||||| ||||||||||||
Sbjct: 64805 cggcggtggaacgcgtcgcggcgccgcctcaccagcatctcgatctctcgcctctcctcc 64746

                                                            
Query: 160   ctcgccatctgctgacacctgcactcggcgctgcagaacgcttgctc 206
             |||||||||||||| | || ||| || |||||||||||||| |||||
Sbjct: 64745 ctcgccatctgctggctccggcattccgcgctgcagaacgcgtgctc 64699



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                             
Query: 380   gcctcggcgagggctgtatgatcaactggagcccgacgagctcgccgg 427
             ||||||||||  |||||||||||| | |||||||||||||||||||||
Sbjct: 64345 gcctcggcgactgctgtatgatcagccggagcccgacgagctcgccgg 64298

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  101 bits (51), Expect = 3e-18
 Identities = 93/107 (86%)
 Strand = Plus / Plus

                                                                           
Query: 100     cggctgtggaacgcttcacggcgcttcctgaccaggatctcgatctcccgcctctcctcc 159
               |||| ||||||||| || ||||||  ||| ||||| ||||||||||| ||||||||||||
Sbjct: 4361807 cggcggtggaacgcgtcgcggcgccgcctcaccagcatctcgatctctcgcctctcctcc 4361866

                                                              
Query: 160     ctcgccatctgctgacacctgcactcggcgctgcagaacgcttgctc 206
               |||||||||||||| | || ||| || |||||||||||||| |||||
Sbjct: 4361867 ctcgccatctgctggctccggcattccgcgctgcagaacgcgtgctc 4361913



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                               
Query: 380     gcctcggcgagggctgtatgatcaactggagcccgacgagctcgccgg 427
               ||||||||||  |||||||||||| | |||||||||||||||||||||
Sbjct: 4362267 gcctcggcgactgctgtatgatcagccggagcccgacgagctcgccgg 4362314

>ref|XM_464320.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1237

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 165 catctgctgacacctgcactcggcgctgcagaacgcttgctctcccttgtaca 217
           |||||| || ||||||||||||| ||||||||| |||| ||| ||| ||||||
Sbjct: 800 catctggtggcacctgcactcggagctgcagaaggctttctcccccctgtaca 748

>dbj|AK072843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O11, full
           insert sequence
          Length = 1237

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 165 catctgctgacacctgcactcggcgctgcagaacgcttgctctcccttgtaca 217
           |||||| || ||||||||||||| ||||||||| |||| ||| ||| ||||||
Sbjct: 800 catctggtggcacctgcactcggagctgcagaaggctttctcccccctgtaca 748

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 165     catctgctgacacctgcactcggcgctgcagaacgctt 202
               |||||| || ||||||||||||| ||||||||| ||||
Sbjct: 4097532 catctggtggcacctgcactcggagctgcagaaggctt 4097495

>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1077_E05
          Length = 116305

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 165  catctgctgacacctgcactcggcgctgcagaacgctt 202
            |||||| || ||||||||||||| ||||||||| ||||
Sbjct: 7546 catctggtggcacctgcactcggagctgcagaaggctt 7509

>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073A21
          Length = 170051

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 165    catctgctgacacctgcactcggcgctgcagaacgctt 202
              |||||| || ||||||||||||| ||||||||| ||||
Sbjct: 144198 catctggtggcacctgcactcggagctgcagaaggctt 144161

>emb|AL050308.9|HSG164F24 Human DNA sequence from clone GS1-164F24 on chromosome Xq26.3-27.3
              Contains a NADH dehydrogenase (ubiquinone) 1 beta
              subcomplex, 3 (12kD, B12) (NDUFB3) pseudogene and part of a
              novel gene, complete sequence
          Length = 213084

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 575    gaaaaagtaagcgtcaattgcagag 599
              ||||||||||||||||||| |||||
Sbjct: 131093 gaaaaagtaagcgtcaatttcagag 131069

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 166      atctgctgacacctgcactcggcgctgcagaac 198
                |||||||| |||||||||||  |||||||||||
Sbjct: 15873007 atctgctgccacctgcactcctcgctgcagaac 15872975

>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 166   atctgctgacacctgcactcggcgctgcagaac 198
             |||||||| |||||||||||  |||||||||||
Sbjct: 36133 atctgctgccacctgcactcctcgctgcagaac 36101

>dbj|AK104973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-B03, full
           insert sequence
          Length = 994

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 166 atctgctgacacctgcactcggcgctgcagaac 198
           |||||||| |||||||||||  |||||||||||
Sbjct: 509 atctgctgccacctgcactcctcgctgcagaac 477

>dbj|AK072558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131I21, full
           insert sequence
          Length = 916

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 166 atctgctgacacctgcactcggcgctgcagaac 198
           |||||||| |||||||||||  |||||||||||
Sbjct: 522 atctgctgccacctgcactcctcgctgcagaac 490

>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     acctgcactcggcgctgcag 195
               ||||||||||||||||||||
Sbjct: 1072320 acctgcactcggcgctgcag 1072339

>ref|XM_414024.1| PREDICTED: Gallus gallus similar to Serine/threonine-protein kinase
            H1 (PSK-H1) (LOC415658), mRNA
          Length = 1865

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  gcttcctgaccaggatctcg 141
            ||||||||||||||||||||
Sbjct: 1011 gcttcctgaccaggatctcg 992

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     ggatctcgatctcccgcctc 153
               ||||||||||||||||||||
Sbjct: 1204922 ggatctcgatctcccgcctc 1204941

>gb|DQ005447.1| Acanthamoeba castellanii mitochondrial helicase twinkle gene,
            complete cds; nuclear gene for mitochondrial product
          Length = 3808

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 410  gcccgacgagctcgccggcg 429
            ||||||||||||||||||||
Sbjct: 2252 gcccgacgagctcgccggcg 2271

>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    ccgcccgccgctgctctcct 313
              ||||||||||||||||||||
Sbjct: 240137 ccgcccgccgctgctctcct 240118

>emb|BX935768.2| Gallus gallus finished cDNA, clone ChEST916a14
          Length = 1863

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  gcttcctgaccaggatctcg 141
            ||||||||||||||||||||
Sbjct: 1011 gcttcctgaccaggatctcg 992

>gb|AE004869.1| Pseudomonas aeruginosa PAO1, section 430 of 529 of the complete
            genome
          Length = 13323

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  cagcagcataggcagcactt 269
            ||||||||||||||||||||
Sbjct: 6694 cagcagcataggcagcactt 6675

>gb|L76605.1|PSEPILVA Pseudomonas aeruginosa (clone pRIC448) pilV, pilW, pilX, pilY1,
            pilY2, and pilE genes, complete cds
          Length = 6729

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 250  cagcagcataggcagcactt 269
            ||||||||||||||||||||
Sbjct: 5526 cagcagcataggcagcactt 5507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,328,142
Number of Sequences: 3902068
Number of extensions: 4328142
Number of successful extensions: 83536
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83160
Number of HSP's gapped (non-prelim): 376
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)