ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal23a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP149_RAT (Q924Y8) Probable G-protein coupled receptor 149 (Indu... 30 4.6
2GP149_MOUSE (Q3UVY1) Probable G-protein coupled receptor 149 (G-... 30 4.6
3JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone dem... 30 7.9

>GP149_RAT (Q924Y8) Probable G-protein coupled receptor 149 (Induced early in|
           differentiating astrocytes gene protein)
          Length = 730

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 535 LLFGADPLLG-GIKLGAAWGCFTRCSAPAVM 624
           LL  + PL G G+ +   WGC T CS+P V+
Sbjct: 161 LLLASLPLCGWGVFVRTPWGCLTDCSSPYVL 191



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>GP149_MOUSE (Q3UVY1) Probable G-protein coupled receptor 149 (G-protein coupled|
           receptor PGR10)
          Length = 732

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 535 LLFGADPLLG-GIKLGAAWGCFTRCSAPAVM 624
           LL  + PL G G+ +   WGC T CS+P V+
Sbjct: 163 LLLASLPLCGWGVFVRTPWGCLTDCSSPYVL 193



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>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C) (Thyroid receptor-interacting protein 8)
           (TRIP-8)
          Length = 2540

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 629 HGMTAGALHRVKHPHAAPSLIP 564
           H +T+G  H V HPH  P+++P
Sbjct: 780 HPLTSGPHHAVHHPHLLPTVLP 801


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,254,762
Number of Sequences: 219361
Number of extensions: 2067585
Number of successful extensions: 5503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5498
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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