>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 86.3 bits (212), Expect(2) = 2e-21
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -2

Query: 185 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 72
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



 Score = 33.9 bits (76), Expect(2) = 2e-21
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -3

Query: 277 GDANQDAMKAGSFYG 233
           GDANQDAMK GSFYG
Sbjct: 413 GDANQDAMKTGSFYG 427

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 66.6 bits (161), Expect(2) = 4e-14
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -2

Query: 188 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 72
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



 Score = 28.9 bits (63), Expect(2) = 4e-14
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -3

Query: 277 GDANQDAMKAGSFYG 233
           GDAN DA+K G+FYG
Sbjct: 423 GDANNDAIKRGTFYG 437

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 67.8 bits (164), Expect(2) = 1e-13
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -2

Query: 185 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 72
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



 Score = 25.8 bits (55), Expect(2) = 1e-13
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 277 GDANQDAMKAGSFYG 233
           GDAN DA+  G+FYG
Sbjct: 423 GDANADAIGRGTFYG 437

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 63.9 bits (154), Expect(2) = 2e-12
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -2

Query: 185 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 78
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



 Score = 25.4 bits (54), Expect(2) = 2e-12
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 277 GDANQDAMKAGSFYG 233
           GDAN+DA+  G+F+G
Sbjct: 421 GDANKDAIDRGTFFG 435

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = -3

Query: 277 GDANQDAMKAGSFYG 233
           GDAN DAMK GSFYG
Sbjct: 413 GDANSDAMKTGSFYG 427

>CAC1F_HUMAN (O60840) Voltage-dependent L-type calcium channel alpha-1F subunit|
           (Voltage-gated calcium channel alpha subunit Cav1.4)
          Length = 1966

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 148 SGTGKVPCWA--PLPPPMQQEMVGVYGEFSNRRRNQPSSH 261
           +G G  P W   P PP ++ E  G  G  + +RRNQ S H
Sbjct: 18  NGAGPGPEWGLCPGPPAVEGESSGASGLGTPKRRNQHSKH 57

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 277 GDANQDAMKAGSFYG 233
           GDAN DAM  G+FYG
Sbjct: 423 GDANSDAMNTGTFYG 437

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 245 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 87
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 277 GDANQDAMKAGSFYG 233
           G AN DAMK G+FYG
Sbjct: 410 GQANDDAMKTGAFYG 424

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 89   CRRRSLPLGRSSWHFGRCNLP 151
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134

>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic|
            region
          Length = 1764

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 155  VPEGCTDQNAKNYDPTARSD 96
            VPE  TD N  NYD T R D
Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402

>DOPO_MOUSE (Q64237) Dopamine beta-hydroxylase precursor (EC 1.14.17.1)|
           (Dopamine beta-monooxygenase)
          Length = 621

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 166 PCWAPLPPPMQQEMVGVYG 222
           PCW+ LP P  +E   +YG
Sbjct: 9   PCWSSLPSPSVREAASMYG 27

>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 159 ARAGRLHRPKCQELRPNGKERRR 91
           A+  R  R K Q LRPNG E+RR
Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,634,682
Number of Sequences: 219361
Number of extensions: 835460
Number of successful extensions: 2213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2212
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)