ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal22i14 |
|---|---|
| Clone Library Name | barley_pub |
>IF3_STAAW (P65141) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = -2 Query: 556 LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISDVER 377 L+G DGE + V +EA+ + E + ++ + NA KP ++ G FK ++ Sbjct: 22 LIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KPPVARIMDYGKFKFEQQKK 76 Query: 376 EQMLELRDTVLRI 338 E+ ++ + ++ + Sbjct: 77 EKEMKKKQKIINV 89
>IF3_STAAS (Q6G8P5) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = -2 Query: 556 LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISDVER 377 L+G DGE + V +EA+ + E + ++ + NA KP ++ G FK ++ Sbjct: 22 LIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KPPVARIMDYGKFKFEQQKK 76 Query: 376 EQMLELRDTVLRI 338 E+ ++ + ++ + Sbjct: 77 EKEMKKKQKIINV 89
>IF3_STAAN (P65140) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = -2 Query: 556 LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISDVER 377 L+G DGE + V +EA+ + E + ++ + NA KP ++ G FK ++ Sbjct: 22 LIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KPPVARIMDYGKFKFEQQKK 76 Query: 376 EQMLELRDTVLRI 338 E+ ++ + ++ + Sbjct: 77 EKEMKKKQKIINV 89
>IF3_STAAM (P65139) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = -2 Query: 556 LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISDVER 377 L+G DGE + V +EA+ + E + ++ + NA KP ++ G FK ++ Sbjct: 22 LIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KPPVARIMDYGKFKFEQQKK 76 Query: 376 EQMLELRDTVLRI 338 E+ ++ + ++ + Sbjct: 77 EKEMKKKQKIINV 89
>IF3_STAAC (Q5HF92) Translation initiation factor IF-3| Length = 175 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = -2 Query: 556 LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISDVER 377 L+G DGE + V +EA+ + E + ++ + NA KP ++ G FK ++ Sbjct: 22 LIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KPPVARIMDYGKFKFEQQKK 76 Query: 376 EQMLELRDTVLRI 338 E+ ++ + ++ + Sbjct: 77 EKEMKKKQKIINV 89
>PYRG_CORGL (Q8NQL7) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 554 Score = 31.6 bits (70), Expect = 1.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 322 SSDTFDPSLLQPIVQVLQEREARVFGSRIAGG 227 SS FDP+ QP++ ++E++A V G GG Sbjct: 414 SSTEFDPAATQPVIATMEEQKAAVSGEADLGG 445
>TRMD_MYCPU (Q98Q98) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 225 Score = 31.2 bits (69), Expect = 2.3 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Frame = -2 Query: 565 LKLLLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISD 386 LK+L+ P G+ + KE V+ ITF + G Y E + I G + ++ Sbjct: 78 LKILVSPQGKLFNQEIAKEIVKNHSEITF--VSGRYEGFDERILNYIDIELSIGDYILTG 135 Query: 385 VEREQMLELRDTVLRIW-GLLRSSDTFDPSLLQPIVQVLQEREARVF 248 E M+ + D+++R+W +++ + S ++ Q RVF Sbjct: 136 GELPSMV-MADSIIRLWEDVIKKESYENESFENNLLDYPQYTRPRVF 181
>IF3_STAES (Q8CS75) Translation initiation factor IF-3| Length = 175 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = -2 Query: 556 LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISDVER 377 L+G DGE + V +EA+ + E + ++ + NA KP ++ G +K ++ Sbjct: 22 LIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KPPVARIMDYGKYKFEQQKK 76 Query: 376 EQMLELRDTVLRI 338 E+ ++ + V+ + Sbjct: 77 EKEMKKKQKVINV 89
>IF3_STAEQ (Q5HNM3) Translation initiation factor IF-3| Length = 175 Score = 31.2 bits (69), Expect = 2.3 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = -2 Query: 556 LLGPDGENLRVLVVKEAVRVTEAITFGTLIGSYNAAPEFLKPLISNGNPAGPFKISDVER 377 L+G DGE + V +EA+ + E + ++ + NA KP ++ G +K ++ Sbjct: 22 LIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNA-----KPPVARIMDYGKYKFEQQKK 76 Query: 376 EQMLELRDTVLRI 338 E+ ++ + V+ + Sbjct: 77 EKEMKKKQKVINV 89
>KCND1_HUMAN (Q9NSA2) Potassium voltage-gated channel subfamily D member 1| (Voltage-gated potassium channel subunit Kv4.1) Length = 647 Score = 31.2 bits (69), Expect = 2.3 Identities = 18/34 (52%), Positives = 21/34 (61%) Frame = +3 Query: 168 GAGGILSSCCNKRAARRWETPPAIREPNTRASRS 269 G G +LSSCC +RA RR AIR N+ AS S Sbjct: 524 GPGSLLSSCCPRRAKRR-----AIRLANSTASVS 552
>GLMS_IDILO (Q5QZH5) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 609 Score = 30.0 bits (66), Expect = 5.1 Identities = 17/51 (33%), Positives = 29/51 (56%) Frame = +1 Query: 226 HLLRYENQTHGLHALVAPVQLAAKDLDQRYQRISKDPIF*EQCLVAPTFVP 378 HL+ +E +THG L+A V+ A + L+ Y + D + E+ +VA + P Sbjct: 130 HLIHHERKTHG--DLLAAVKSAVRQLEGAYGTVVMDTQYPERLVVARSGSP 178
>RNF39_MACMU (Q5TM52) RING finger protein 39| Length = 420 Score = 30.0 bits (66), Expect = 5.1 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +3 Query: 189 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 299 S C ARRW TPPA +T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TDTEASPTACPCCGLPCPR 140
>RNF39_PANTR (Q7YR31) RING finger protein 39 (Protein HZFw)| Length = 420 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +3 Query: 189 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 299 S C ARRW TPPA T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TGTEASPTACPCCGLPCPR 140
>RNF39_HUMAN (Q9H2S5) RING finger protein 39 (Protein HZFw)| Length = 420 Score = 29.6 bits (65), Expect = 6.7 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +3 Query: 189 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 299 S C ARRW TPPA T AS +C C + C R Sbjct: 106 SFCRACLARRWGTPPA---TGTEASPTACPCCGLPCPR 140
>MATK_ALICA (Q9GHE4) Maturase K (Intron maturase)| Length = 512 Score = 29.3 bits (64), Expect = 8.7 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 7/42 (16%) Frame = +3 Query: 21 KQTLTLGGVYVLVTNYSCF-------SFSFWCRKYRVNLHGL 125 K L G Y+L+ + C+ FSFW + YR++++ L Sbjct: 286 KSILASKGTYLLMKKWKCYLVNFWECHFSFWSQPYRIHINQL 327 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,854,663 Number of Sequences: 219361 Number of extensions: 1865387 Number of successful extensions: 5330 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5317 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
