ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal22f20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK060135.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
2dbj|AK058893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
3gb|AY109944.1| Zea mays CL24591_1 mRNA sequence 216 6e-53
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 202 9e-49
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 202 9e-49
6emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa... 202 9e-49
7ref|NM_106359.2| Arabidopsis thaliana unknown protein AT1G77090 ... 48 0.031
8gb|AF370571.1|AF370571 Arabidopsis thaliana Unknown protein (F22... 48 0.031
9emb|BX818244.1|CNS0AEDP Arabidopsis thaliana Full-length cDNA Co... 48 0.031
10emb|BX814327.1|CNS0AEIX Arabidopsis thaliana Full-length cDNA Co... 48 0.031
11emb|BX817429.1|CNS0ADW3 Arabidopsis thaliana Full-length cDNA Co... 48 0.031
12gb|AC002291.1| Arabidopsis thaliana chromosome I BAC F22K20 geno... 44 0.48
13gb|AC005912.1| Homo sapiens 12 BAC RPCI11-543P15 (Roswell Park C... 44 0.48
14gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.9
15gb|AC157597.4| Mus musculus BAC clone RP23-231O9 from chromosome... 42 1.9
16emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.9
17emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 42 1.9
18gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.9
19gb|AC160029.3| Mus musculus 10 BAC RP24-105I7 (Roswell Park Canc... 42 1.9
20gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 42 1.9
21gb|AC113292.6| Mus musculus chromosome 15, clone RP23-418M3, com... 40 7.6
22gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 7.6
23emb|AL353607.20| Human DNA sequence from clone RP11-652B19 on ch... 40 7.6
24emb|AL138694.18| Human DNA sequence from clone RP11-330C15 on ch... 40 7.6
25gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hos... 40 7.6
26emb|AL021106.1|DMC63B12 Drosophila melanogaster cosmid clone 63B12 40 7.6
27gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Canc... 40 7.6
28gb|AC104147.4| Drosophila melanogaster X BAC RP98-33I18 (Roswell... 40 7.6
29ref|NM_166911.3| Drosophila melanogaster trithorax-related CG384... 40 7.6
30ref|NM_080301.2| Drosophila melanogaster trithorax-related CG384... 40 7.6
31gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Can... 40 7.6
32gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosom... 40 7.6
33gb|AC159204.2| Mus musculus BAC clone RP23-229H13 from chromosom... 40 7.6
34gb|AC154485.2| Mus musculus BAC clone RP24-117M9 from chromosome... 40 7.6
35tpg|BK005736.1| TPA: TPA_exp: Drosophila melanogaster dosage com... 40 7.6
36gb|AC153937.11| Mus musculus 10 BAC RP24-458J4 (Roswell Park Can... 40 7.6
37ref|XM_392924.2| PREDICTED: Apis mellifera similar to intestinal... 40 7.6
38gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 o... 40 7.6
39emb|BX293555.7| Mouse DNA sequence from clone RP23-202M10 on chr... 40 7.6 
>dbj|AK060135.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D07, full
           insert sequence
          Length = 1060

 Score =  278 bits (140), Expect = 2e-71
 Identities = 251/288 (87%)
 Strand = Plus / Minus

                                                                       
Query: 226 accctagactacgcggaatgattctgctatttgcttcagatccttgtaatgcctcttcca 285
           ||||||||| || || |||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 920 accctagacaacacgaaatgattcagctatttgcttcaggtcattgtaattcctcttcca 861

                                                                       
Query: 286 ttgtagcccgtttgcagttacgctgaacaggtagagcctattcccagcagccgtagctgt 345
           ||||||||| |||||||||||  |||||||||||||||| || ||||| || || || ||
Sbjct: 860 ttgtagcccatttgcagttacattgaacaggtagagcctgtttccagcggcagttgcagt 801

                                                                       
Query: 346 gatgaagatatggggtggttccagctcgaactggtagtaagttcttccggagtactctgc 405
           |||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 800 gatgaagatatgaggtggttccagctcaaactggtagtaagttcttcctgaatactctgc 741

                                                                       
Query: 406 tgtggctgtggacaaaaccttcccttccacattctcgccaatgacctccggtccaaaggc 465
           ||| ||  ||||||||||||||||||| ||||| || || || ||||| ||||| |||||
Sbjct: 740 tgttgccatggacaaaaccttcccttcaacattttcaccgatcacctctggtccgaaggc 681

                                                           
Query: 466 gttgatcaccttctccggcgtgccgatcttctcgatcgttgcatcgtc 513
           || ||||||||||||||| || |||||||| || || || ||||||||
Sbjct: 680 gtcgatcaccttctccggtgtaccgatcttttcaattgtcgcatcgtc 633
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>dbj|AK058893.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E10, full
           insert sequence
          Length = 1007

 Score =  278 bits (140), Expect = 2e-71
 Identities = 251/288 (87%)
 Strand = Plus / Minus

                                                                       
Query: 226 accctagactacgcggaatgattctgctatttgcttcagatccttgtaatgcctcttcca 285
           ||||||||| || || |||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 914 accctagacaacacgaaatgattcagctatttgcttcaggtcattgtaattcctcttcca 855

                                                                       
Query: 286 ttgtagcccgtttgcagttacgctgaacaggtagagcctattcccagcagccgtagctgt 345
           ||||||||| |||||||||||  |||||||||||||||| || ||||| || || || ||
Sbjct: 854 ttgtagcccatttgcagttacattgaacaggtagagcctgtttccagcggcagttgcagt 795

                                                                       
Query: 346 gatgaagatatggggtggttccagctcgaactggtagtaagttcttccggagtactctgc 405
           |||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct: 794 gatgaagatatgaggtggttccagctcaaactggtagtaagttcttcctgaatactctgc 735

                                                                       
Query: 406 tgtggctgtggacaaaaccttcccttccacattctcgccaatgacctccggtccaaaggc 465
           ||| ||  ||||||||||||||||||| ||||| || || || ||||| ||||| |||||
Sbjct: 734 tgttgccatggacaaaaccttcccttcaacattttcaccgatcacctctggtccgaaggc 675

                                                           
Query: 466 gttgatcaccttctccggcgtgccgatcttctcgatcgttgcatcgtc 513
           || ||||||||||||||| || |||||||| || || || ||||||||
Sbjct: 674 gtcgatcaccttctccggtgtaccgatcttttcaattgtcgcatcgtc 627
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>gb|AY109944.1| Zea mays CL24591_1 mRNA sequence
          Length = 1069

 Score =  216 bits (109), Expect = 6e-53
 Identities = 244/289 (84%)
 Strand = Plus / Plus

                                                                       
Query: 242 aatgattctgctatttgcttcagatccttgtaatgcctcttccattgtagcccgtttgca 301
           ||||||| |||||| || || || || ||||||||||||||||| || || |||||||||
Sbjct: 293 aatgattgtgctatctgtttgaggtctttgtaatgcctcttccactgcagaccgtttgca 352

                                                                       
Query: 302 gttacgctgaacaggtagagcctattcccagcagccgtagctgtgatgaagatatggggt 361
           ||||| ||||| ||||| ||||| |||||||| ||||| || |||||||| | |||||| 
Sbjct: 353 gttacactgaagaggtacagcctgttcccagctgccgtggcggtgatgaacacatggggc 412

                                                                       
Query: 362 ggttccagctcgaactggtagtaagttcttccggagtactctgctgtggctgtggacaaa 421
           || ||||||||||||||||||||||||||||| || | | | || ||  | | |||||  
Sbjct: 413 ggctccagctcgaactggtagtaagttcttcccgaatgcgccgccgtctccgaggacagg 472

                                                                       
Query: 422 accttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcaccttctcc 481
           |||||||||||||| ||||| || ||||||||||| || |||||| ||||||||||||||
Sbjct: 473 accttcccttccacgttctctccgatgacctccggaccgaaggcggtgatcaccttctcc 532

                                                            
Query: 482 ggcgtgccgatcttctcgatcgttgcatcgtcaaggtcatctgcaaacc 530
           ||  |||||||||||||||| || || ||||| ||||||||||| ||||
Sbjct: 533 gggctgccgatcttctcgatggtcgcgtcgtccaggtcatctgcgaacc 581
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  202 bits (102), Expect = 9e-49
 Identities = 189/218 (86%)
 Strand = Plus / Plus

                                                                           
Query: 296     tttgcagttacgctgaacaggtagagcctattcccagcagccgtagctgtgatgaagata 355
               |||||||||||  |||||||||||||||| || ||||| || || || ||||||||||||
Sbjct: 4555451 tttgcagttacattgaacaggtagagcctgtttccagcggcagttgcagtgatgaagata 4555510

                                                                           
Query: 356     tggggtggttccagctcgaactggtagtaagttcttccggagtactctgctgtggctgtg 415
               || |||||||||||||| |||||||||||||||||||| || ||||||||||| ||  ||
Sbjct: 4555511 tgaggtggttccagctcaaactggtagtaagttcttcctgaatactctgctgttgccatg 4555570

                                                                           
Query: 416     gacaaaaccttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcacc 475
               ||||||||||||||||| ||||| || || || ||||| ||||| ||||||| |||||||
Sbjct: 4555571 gacaaaaccttcccttcaacattttcaccgatcacctctggtccgaaggcgtcgatcacc 4555630

                                                     
Query: 476     ttctccggcgtgccgatcttctcgatcgttgcatcgtc 513
               |||||||| || |||||||| || || || ||||||||
Sbjct: 4555631 ttctccggtgtaccgatcttttcaattgtcgcatcgtc 4555668



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                           
Query: 226     accctagactacgcggaatgattctgctatttgcttcagatccttgtaatgcctcttcca 285
               ||||||||| || || |||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 4555297 accctagacaacacgaaatgattcagctatttgcttcaggtcattgtaattcctcttcca 4555356

                        
Query: 286     ttgtagccc 294
               |||||||||
Sbjct: 4555357 ttgtagccc 4555365
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  202 bits (102), Expect = 9e-49
 Identities = 189/218 (86%)
 Strand = Plus / Plus

                                                                           
Query: 296     tttgcagttacgctgaacaggtagagcctattcccagcagccgtagctgtgatgaagata 355
               |||||||||||  |||||||||||||||| || ||||| || || || ||||||||||||
Sbjct: 4555432 tttgcagttacattgaacaggtagagcctgtttccagcggcagttgcagtgatgaagata 4555491

                                                                           
Query: 356     tggggtggttccagctcgaactggtagtaagttcttccggagtactctgctgtggctgtg 415
               || |||||||||||||| |||||||||||||||||||| || ||||||||||| ||  ||
Sbjct: 4555492 tgaggtggttccagctcaaactggtagtaagttcttcctgaatactctgctgttgccatg 4555551

                                                                           
Query: 416     gacaaaaccttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcacc 475
               ||||||||||||||||| ||||| || || || ||||| ||||| ||||||| |||||||
Sbjct: 4555552 gacaaaaccttcccttcaacattttcaccgatcacctctggtccgaaggcgtcgatcacc 4555611

                                                     
Query: 476     ttctccggcgtgccgatcttctcgatcgttgcatcgtc 513
               |||||||| || |||||||| || || || ||||||||
Sbjct: 4555612 ttctccggtgtaccgatcttttcaattgtcgcatcgtc 4555649



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                           
Query: 226     accctagactacgcggaatgattctgctatttgcttcagatccttgtaatgcctcttcca 285
               ||||||||| || || |||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 4555278 accctagacaacacgaaatgattcagctatttgcttcaggtcattgtaattcctcttcca 4555337

                        
Query: 286     ttgtagccc 294
               |||||||||
Sbjct: 4555338 ttgtagccc 4555346
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>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129155

 Score =  202 bits (102), Expect = 9e-49
 Identities = 189/218 (86%)
 Strand = Plus / Minus

                                                                         
Query: 296   tttgcagttacgctgaacaggtagagcctattcccagcagccgtagctgtgatgaagata 355
             |||||||||||  |||||||||||||||| || ||||| || || || ||||||||||||
Sbjct: 49327 tttgcagttacattgaacaggtagagcctgtttccagcggcagttgcagtgatgaagata 49268

                                                                         
Query: 356   tggggtggttccagctcgaactggtagtaagttcttccggagtactctgctgtggctgtg 415
             || |||||||||||||| |||||||||||||||||||| || ||||||||||| ||  ||
Sbjct: 49267 tgaggtggttccagctcaaactggtagtaagttcttcctgaatactctgctgttgccatg 49208

                                                                         
Query: 416   gacaaaaccttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcacc 475
             ||||||||||||||||| ||||| || || || ||||| ||||| ||||||| |||||||
Sbjct: 49207 gacaaaaccttcccttcaacattttcaccgatcacctctggtccgaaggcgtcgatcacc 49148

                                                   
Query: 476   ttctccggcgtgccgatcttctcgatcgttgcatcgtc 513
             |||||||| || |||||||| || || || ||||||||
Sbjct: 49147 ttctccggtgtaccgatcttttcaattgtcgcatcgtc 49110



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 226   accctagactacgcggaatgattctgctatttgcttcagatccttgtaatgcctcttcca 285
             ||||||||| || || |||||||| |||||||||||||| || ||||||| |||||||||
Sbjct: 49481 accctagacaacacgaaatgattcagctatttgcttcaggtcattgtaattcctcttcca 49422

                      
Query: 286   ttgtagccc 294
             |||||||||
Sbjct: 49421 ttgtagccc 49413
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>ref|NM_106359.2| Arabidopsis thaliana unknown protein AT1G77090 mRNA, complete cds
          Length = 1009

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 259 cttcagatccttgtaatgcctcttccattgtagcccgttt 298
           ||||||||||||||| || ||||||||||| || ||||||
Sbjct: 800 cttcagatccttgtagtgtctcttccattgaagaccgttt 761



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 422 accttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcaccttc 478
           ||||||||||| || || || ||||| || || |||||||| ||||| |||||||||
Sbjct: 637 accttcccttctacgttttctccaataacttctggtccaaacgcgttaatcaccttc 581
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>gb|AF370571.1|AF370571 Arabidopsis thaliana Unknown protein (F22K20.16) mRNA, complete cds
          Length = 870

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 259 cttcagatccttgtaatgcctcttccattgtagcccgttt 298
           ||||||||||||||| || ||||||||||| || ||||||
Sbjct: 751 cttcagatccttgtagtgtctcttccattgaagaccgttt 712



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 422 accttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcaccttc 478
           ||||||||||| || || || ||||| || || |||||||| ||||| |||||||||
Sbjct: 587 accttcccttctacgttttctccaataacttctggtccaaacgcgttaatcaccttc 531
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>emb|BX818244.1|CNS0AEDP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL69ZE06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 944

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 259 cttcagatccttgtaatgcctcttccattgtagcccgttt 298
           ||||||||||||||| || ||||||||||| || ||||||
Sbjct: 771 cttcagatccttgtagtgtctcttccattgaagaccgttt 732



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 422 accttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcaccttc 478
           ||||||||||| || || || ||||| || || |||||||| ||||| |||||||||
Sbjct: 608 accttcccttctacgttttctccaataacttctggtccaaacgcgttaatcaccttc 552
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>emb|BX814327.1|CNS0AEIX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB68ZD10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 965

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 259 cttcagatccttgtaatgcctcttccattgtagcccgttt 298
           ||||||||||||||| || ||||||||||| || ||||||
Sbjct: 779 cttcagatccttgtagtgtctcttccattgaagaccgttt 740
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>emb|BX817429.1|CNS0ADW3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL22ZA09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 861

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 259 cttcagatccttgtaatgcctcttccattgtagcccgttt 298
           ||||||||||||||| || ||||||||||| || ||||||
Sbjct: 784 cttcagatccttgtagtgtctcttccattgaagaccgttt 745



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 422 accttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcaccttc 478
           ||||||||||| || || || ||||| || || |||||||| ||||| |||||||||
Sbjct: 621 accttcccttctacgttttctccaataacttctggtccaaacgcgttaatcaccttc 565
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>gb|AC002291.1| Arabidopsis thaliana chromosome I BAC F22K20 genomic sequence, complete
             sequence
          Length = 96642

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 259   cttcagatccttgtaatgcctcttccattg 288
             ||||||||||||||| || |||||||||||
Sbjct: 79557 cttcagatccttgtagtgtctcttccattg 79586



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                      
Query: 422   accttcccttccacattctcgccaatgacctccggtccaaaggcgttgatcaccttc 478
             ||||||||||| || || || ||||| || || |||||||| ||||| |||||||||
Sbjct: 79825 accttcccttctacgttttctccaataacttctggtccaaacgcgttaatcaccttc 79881
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>gb|AC005912.1| Homo sapiens 12 BAC RPCI11-543P15 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 165516

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 101   tcagtttcttcagctagaaaat 122
             ||||||||||||||||||||||
Sbjct: 92640 tcagtttcttcagctagaaaat 92661
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 476     ttctccggcgtgccgatcttctcga 500
               ||||||||||||||||||| |||||
Sbjct: 1037336 ttctccggcgtgccgatctgctcga 1037360
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>gb|AC157597.4| Mus musculus BAC clone RP23-231O9 from chromosome 16, complete sequence
          Length = 171299

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   ctgtggacaaaaccttccctt 431
             |||||||||||||||||||||
Sbjct: 73890 ctgtggacaaaaccttccctt 73870
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 476     ttctccggcgtgccgatcttctcga 500
               ||||||||||||||||||| |||||
Sbjct: 2354864 ttctccggcgtgccgatctgctcga 2354888
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 479    tccggcgtgccgatcttctcgatcg 503
              |||||||||||||||| ||||||||
Sbjct: 850415 tccggcgtgccgatctgctcgatcg 850391
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 476     ttctccggcgtgccgatcttctcga 500
               ||||||||||||||||||| |||||
Sbjct: 1903356 ttctccggcgtgccgatctgctcga 1903380
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>gb|AC160029.3| Mus musculus 10 BAC RP24-105I7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 184696

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 92     atacaatgttcagtttcttca 112
              |||||||||||||||||||||
Sbjct: 121380 atacaatgttcagtttcttca 121360
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>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 336     ccgtagctgtgatgaagatat 356
               |||||||||||||||||||||
Sbjct: 1801104 ccgtagctgtgatgaagatat 1801124
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>gb|AC113292.6| Mus musculus chromosome 15, clone RP23-418M3, complete sequence
          Length = 218109

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 99     gttcagtttcttcagctagaaaat 122
              |||| |||||||||||||||||||
Sbjct: 191874 gttccgtttcttcagctagaaaat 191851
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 488    ccgatcttctcgatcgttgc 507
              ||||||||||||||||||||
Sbjct: 991958 ccgatcttctcgatcgttgc 991939
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>emb|AL353607.20| Human DNA sequence from clone RP11-652B19 on chromosome 9 Contains part
             of the PCSK5 gene for proprotein convertase
             subtilisin/kexin type 5, complete sequence
          Length = 141170

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   agtttcttcagctagaaaat 122
             ||||||||||||||||||||
Sbjct: 82395 agtttcttcagctagaaaat 82414
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>emb|AL138694.18| Human DNA sequence from clone RP11-330C15 on chromosome 13q33.1-34
             Contains a pseudogene similar to part of host cell factor
             2 (HCF-2) and a CpG island, complete sequence
          Length = 157264

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ttcagtttcttcagctagaa 119
             ||||||||||||||||||||
Sbjct: 54057 ttcagtttcttcagctagaa 54076
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>gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 215638

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 472   caccttctccggcgtgccga 491
             ||||||||||||||||||||
Sbjct: 27948 caccttctccggcgtgccga 27967
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>emb|AL021106.1|DMC63B12 Drosophila melanogaster cosmid clone 63B12
          Length = 36401

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   cttctccggcgtgccgatct 494
             ||||||||||||||||||||
Sbjct: 25781 cttctccggcgtgccgatct 25800
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>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206282

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    tttcttcagctagaaaatca 124
              ||||||||||||||||||||
Sbjct: 149840 tttcttcagctagaaaatca 149859
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>gb|AC104147.4| Drosophila melanogaster X BAC RP98-33I18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170490

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   cttctccggcgtgccgatct 494
             ||||||||||||||||||||
Sbjct: 79771 cttctccggcgtgccgatct 79790
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>ref|NM_166911.3| Drosophila melanogaster trithorax-related CG3848-RD, transcript
            variant D (trr), mRNA
          Length = 8145

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 475  cttctccggcgtgccgatct 494
            ||||||||||||||||||||
Sbjct: 2226 cttctccggcgtgccgatct 2207
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>ref|NM_080301.2| Drosophila melanogaster trithorax-related CG3848-RC, transcript
            variant C (trr), mRNA
          Length = 8082

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 475  cttctccggcgtgccgatct 494
            ||||||||||||||||||||
Sbjct: 2163 cttctccggcgtgccgatct 2144
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>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 135177

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   tctgctatttgcttcagatc 267
             ||||||||||||||||||||
Sbjct: 10028 tctgctatttgcttcagatc 10009
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>gb|AC154706.2| Mus musculus BAC clone RP23-132D23 from chromosome 14, complete sequence
          Length = 215330

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    agtttcttcagctagaaaat 122
              ||||||||||||||||||||
Sbjct: 109019 agtttcttcagctagaaaat 109038
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>gb|AC159204.2| Mus musculus BAC clone RP23-229H13 from chromosome 12, complete sequence
          Length = 211156

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    gtgtacttagcctcccttta 158
              ||||||||||||||||||||
Sbjct: 192078 gtgtacttagcctcccttta 192059
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>gb|AC154485.2| Mus musculus BAC clone RP24-117M9 from chromosome 12, complete sequence
          Length = 154864

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 139    gtgtacttagcctcccttta 158
              ||||||||||||||||||||
Sbjct: 123691 gtgtacttagcctcccttta 123710
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>tpg|BK005736.1| TPA: TPA_exp: Drosophila melanogaster dosage compensation complex
            binding fragment 1, complete sequence
          Length = 5340

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 475  cttctccggcgtgccgatct 494
            ||||||||||||||||||||
Sbjct: 4869 cttctccggcgtgccgatct 4888
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>gb|AC153937.11| Mus musculus 10 BAC RP24-458J4 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 195695

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    tctgctatttgcttcagatc 267
              ||||||||||||||||||||
Sbjct: 194111 tctgctatttgcttcagatc 194092
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>ref|XM_392924.2| PREDICTED: Apis mellifera similar to intestinal cell kinase
           (LOC409409), mRNA
          Length = 2054

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 474 ccttctccggcgtgccgatc 493
           ||||||||||||||||||||
Sbjct: 848 ccttctccggcgtgccgatc 829
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>gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 of 74 of the complete
              sequence
          Length = 300933

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    cttctccggcgtgccgatct 494
              ||||||||||||||||||||
Sbjct: 122061 cttctccggcgtgccgatct 122080
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>emb|BX293555.7| Mouse DNA sequence from clone RP23-202M10 on chromosome 2, complete
             sequence
          Length = 192154

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tagaacagattatgtgatga 208
             ||||||||||||||||||||
Sbjct: 48949 tagaacagattatgtgatga 48930


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,608,325
Number of Sequences: 3902068
Number of extensions: 4608325
Number of successful extensions: 86040
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85782
Number of HSP's gapped (non-prelim): 258
length of query: 558
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 535
effective length of database: 17,143,297,704
effective search space: 9171664271640
effective search space used: 9171664271640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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