ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal22f07 |
|---|---|
| Clone Library Name | barley_pub |
>ACCA_LEGPL (Q5WYB5) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 317 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +2 Query: 188 ASSYSSVGTAYANLKAVIARRVTALKRISFMLLCIFTATSXSNFA 322 A +Y +G N IAR + A+ RI ++CI T + S A Sbjct: 161 AGAYPGIGAEERNQSEAIARNLFAMSRIKTPIVCIVTGEAGSGGA 205
>ACCA_LEGPH (Q5ZXE6) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 317 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +2 Query: 188 ASSYSSVGTAYANLKAVIARRVTALKRISFMLLCIFTATSXSNFA 322 A +Y +G N IAR + A+ RI ++CI T + S A Sbjct: 161 AGAYPGIGAEERNQSEAIARNLFAMSRIKTPIVCIVTGEAGSGGA 205
>ACCA_LEGPA (Q5X6W5) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 317 Score = 30.0 bits (66), Expect = 1.5 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = +2 Query: 188 ASSYSSVGTAYANLKAVIARRVTALKRISFMLLCIFTATSXSNFA 322 A +Y +G N IAR + A+ RI ++CI T + S A Sbjct: 161 AGAYPGIGAEERNQSEAIARNLFAMSRIKTPIVCIVTGEAGSGGA 205
>PEPX_STRA5 (Q8DXW0) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro| dipeptidyl-peptidase) (X-prolyl-dipeptidyl aminopeptidase) (X-PDAP) Length = 761 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = +2 Query: 32 YTCHIHRAASKILYNLQRLTFSMRPS*IMKVFGTLVLQKPHS*TKRVIIHRGASSY 199 Y H++ S+++Y ++++P + KVF L P + K + +H+G Y Sbjct: 448 YLTHVNNVKSRVVYTHGLQDWNVKPRHVYKVFNAL----PQTIKKHLFLHQGQHVY 499
>PEPX_STRA3 (Q8E3H8) Xaa-Pro dipeptidyl-peptidase (EC 3.4.14.11) (X-Pro| dipeptidyl-peptidase) (X-prolyl-dipeptidyl aminopeptidase) (X-PDAP) Length = 761 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = +2 Query: 32 YTCHIHRAASKILYNLQRLTFSMRPS*IMKVFGTLVLQKPHS*TKRVIIHRGASSY 199 Y H++ S+++Y ++++P + KVF L P + K + +H+G Y Sbjct: 448 YLTHVNNVKSRVVYTHGLQDWNVKPRHVYKVFNAL----PQTIKKHLFLHQGQHVY 499
>ESXA_MYCLE (Q50206) 6 kDa early secretory antigenic target homolog| (ESAT-6-like protein) (L-ESAT) Length = 95 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 Query: 127 WHFSPTETALLNQKGNHTSRCVKLQQCRNSLCKPQSS 237 WHF + A+ +G+ + L+QC+ SL K QSS Sbjct: 5 WHFPALQGAVNELQGSQSRIDALLEQCQESLTKLQSS 41
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) Length = 4543 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/48 (27%), Positives = 24/48 (50%) Frame = +1 Query: 160 NQKGNHTSRCVKLQQCRNSLCKPQSSDCQESYGPEENIVHASLYLHSN 303 N KG+H C K +++CK + S+ Q Y ++N + + + N Sbjct: 3838 NTKGSHVCSCAKNFMKTDNMCKAEGSEHQILYIADDNKIRSMYPFNPN 3885
>K0310_HUMAN (O15027) Protein KIAA0310| Length = 2179 Score = 28.1 bits (61), Expect = 5.8 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = +1 Query: 22 RQNLYLPYTPSCQQNSVQFTTS-HIFYEAIMNHEGIWHFSPTETALLNQKGNHTSRCVKL 198 R ++ P TPS + + F TS + +E + +H + P E N G CV+ Sbjct: 407 RGSVSQPSTPSPPKPTGIFQTSANSSFEPVKSH--LVGVKPFEADRANVVGEVRETCVRQ 464 Query: 199 QQCRNSLCKPQSS 237 +QCR + P +S Sbjct: 465 KQCRPAAALPDAS 477
>ANNU_SCHAM (P52183) Annulin (Protein-glutamine gamma-glutamyltransferase) (EC| 2.3.2.13) (Transglutaminase) Length = 772 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +1 Query: 7 LTFSNRQNLYLPYTPSCQQNSVQFTTSHIFYEAIMNHEG-IWHFS 138 +++S + Y+ Y P C+Q+ V + E ++N G IW S Sbjct: 198 VSYSYKDPFYILYNPWCRQDQVFLEGEELLQEYVLNDTGLIWRGS 242
>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL| receptor) (Scavenger receptor class F member 1) Length = 830 Score = 28.1 bits (61), Expect = 5.8 Identities = 20/73 (27%), Positives = 25/73 (34%) Frame = +1 Query: 49 PSCQQNSVQFTTSHIFYEAIMNHEGIWHFSPTETALLNQKGNHTSRCVKLQQCRNSLCKP 228 P+C Q S T A G W S + G H + C +C LC P Sbjct: 356 PTCVQGSCDTVTGDCVCSA-----GYWGPSCNASC---PAGFHGNNCSVPCECPEGLCHP 407 Query: 229 QSSDCQESYGPEE 267 S CQ G + Sbjct: 408 VSGSCQPGSGSRD 420
>MED31_CAEEL (P91869) Probable mediator of RNA polymerase II transcription| subunit 31 (Mediator complex subunit 31) (Mediator complex subunit soh-1) Length = 163 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = +1 Query: 154 LLNQKGNHTSRCVKLQQCRNSLCKPQSSDCQES--YGPEENIVHASLYLHSNLXLQ 315 LL K +RC+K QC + L QS ++S YGP V + L L+ Sbjct: 48 LLYWKDPQYARCLKFPQCLHMLEALQSQQFRDSMAYGPSAKFVEDQVVLQWQFYLR 103
>IGAA_ECO57 (P58720) Putative membrane protein igaA homolog| Length = 711 Score = 27.3 bits (59), Expect = 9.8 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 14/71 (19%) Frame = +1 Query: 82 TSHIFYEAIMNHEGIWHFSPTETALLNQKGN--------------HTSRCVKLQQCRNSL 219 T HI I + G+W + T LL G+ H +R +K+Q S Sbjct: 638 TQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQRHRTRMMKIQAYYESC 697 Query: 220 CKPQSSDCQES 252 PQ ES Sbjct: 698 LNPQLITPSES 708
>RECF_CHLTR (O84077) DNA replication and repair protein recF| Length = 365 Score = 27.3 bits (59), Expect = 9.8 Identities = 8/23 (34%), Positives = 17/23 (73%) Frame = +1 Query: 64 NSVQFTTSHIFYEAIMNHEGIWH 132 ++++F SH F EA+ +H+ ++H Sbjct: 59 DAIRFGASHFFIEAVFSHKEVFH 81
>RECF_CHLTA (Q3KMU7) DNA replication and repair protein recF| Length = 365 Score = 27.3 bits (59), Expect = 9.8 Identities = 8/23 (34%), Positives = 17/23 (73%) Frame = +1 Query: 64 NSVQFTTSHIFYEAIMNHEGIWH 132 ++++F SH F EA+ +H+ ++H Sbjct: 59 DAIRFGASHFFIEAVFSHKEVFH 81 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,526,038 Number of Sequences: 219361 Number of extensions: 822608 Number of successful extensions: 1722 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1691 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1722 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
