ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal21p21 |
|---|---|
| Clone Library Name | barley_pub |
>TL26_ARATH (P82538) Thylakoid lumenal 25.6 kDa protein, chloroplast precursor| Length = 230 Score = 123 bits (309), Expect = 4e-28 Identities = 58/152 (38%), Positives = 88/152 (57%) Frame = -3 Query: 619 QKNYRSYVXANDGYSYLYPADWRDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLG 440 +K + + D Y++LYP W++ G D +KD L+SV V +PT K I++ G Sbjct: 78 KKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNLVPTSKQTIKEFG 137 Query: 439 PMDEAIFNLVNEVYAAPNQIPTIYEMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGN 260 P + L+ +V A PNQ T+ + E VDG+ Y+ FE+ ++A Y A TI + N Sbjct: 138 PPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQFEFTVQARNYTRHALGTITVFN 197 Query: 259 GRYYTLIVTANERRWSRLRNKLKVVADSFKIS 164 G +YTL ANERRW +++++L V DSFKI+ Sbjct: 198 GNFYTLTTGANERRWEKMKDRLHTVVDSFKIT 229
>TL215_ARATH (O23403) Thylakoid lumenal 21.5 kDa protein, chloroplast precursor| Length = 287 Score = 42.0 bits (97), Expect = 0.001 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 28/179 (15%) Frame = -3 Query: 610 YRSYVXANDGYSYLYPADWRDFDFLGHDSAFKDRNVQLQSVRVAF---IPTQKTDIRDLG 440 +R Y+ DGYS+ YP +W G D F+D V +++ V F + T + DLG Sbjct: 109 FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLG 168 Query: 439 PMDEA--------IFNLVNEVYAAPNQIPTIYEMQERTVDGRNYWTFEYDLEAPG----- 299 +E + ++ Q + DG+ Y+ E ++++ Sbjct: 169 SPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNEL 228 Query: 298 ------------YGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFKISDL 158 + A + + N R Y++ + E+ + L+ V DSF++ + Sbjct: 229 AVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 41.2 bits (95), Expect = 0.003 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 22/160 (13%) Frame = -3 Query: 586 DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAIFN 416 DG+ L P+ W ++ +F G ++D +V V PT K I+D G ++ + Sbjct: 103 DGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQ 162 Query: 415 L-------------VNEVYAAPNQIPT--IYEMQERTVDGRNYWTFEY---DLEAPGYGV 290 + ++E PN + T I E V G++Y++ + G Sbjct: 163 VDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGK 222 Query: 289 SAFATIAIGNGRYYTLIVTANERRWSRLRNK-LKVVADSF 173 T + +G+ Y A ++RW + K ++ A SF Sbjct: 223 HLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSF 262
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 38.5 bits (88), Expect = 0.017 Identities = 38/176 (21%), Positives = 71/176 (40%), Gaps = 22/176 (12%) Frame = -3 Query: 625 KYQKNYRSYVXANDGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTD 455 K +Y Y + DG+ P+ W ++ +F G ++D ++ V PT K Sbjct: 90 KSNTDYLPY--SGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKS 147 Query: 454 IRDLGPMDEAI----FNLVNEVYAA---------PNQIPT--IYEMQERTVDGRNYW--- 329 I+D G +E + + L + Y P+ + T I E V+G++Y+ Sbjct: 148 IKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVS 207 Query: 328 TFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 164 + G T + +G+ Y A ++RW + R ++ A SF ++ Sbjct: 208 VLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 37.7 bits (86), Expect = 0.028 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 22/163 (13%) Frame = -3 Query: 586 DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI-- 422 DG+ P+ W ++ ++ G F+D +V VA PT K I D G ++ + Sbjct: 104 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 163 Query: 421 --FNLVNEVYAAPNQ-----------IPTIYEMQERTVDGRNYWTFEY---DLEAPGYGV 290 + L + Y+ I + E V G+ Y+ + G Sbjct: 164 VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGK 223 Query: 289 SAFATIAIGNGRYYTLIVTANERRWSRLRNK-LKVVADSFKIS 164 T + +G+ Y A ++RW + K ++ A SF ++ Sbjct: 224 HQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 37.4 bits (85), Expect = 0.037 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 22/163 (13%) Frame = -3 Query: 586 DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI-- 422 DG+ PA W ++ ++ G F+D ++ V PT K I D G +E + Sbjct: 101 DGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQ 160 Query: 421 --FNLVNEVYAAP---------NQIPT--IYEMQERTVDGRNYW---TFEYDLEAPGYGV 290 + L + Y N + T I E + V G+ Y+ + G Sbjct: 161 VNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGK 220 Query: 289 SAFATIAIGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 164 T + G+ Y A ++RW + R ++ A SF ++ Sbjct: 221 HQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 37.0 bits (84), Expect = 0.048 Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 22/163 (13%) Frame = -3 Query: 586 DGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI-- 422 DG+ P+ W ++ ++ G F+D +V VA PT K I D G ++ + Sbjct: 103 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 162 Query: 421 --FNLVNEVYAAPNQ-----------IPTIYEMQERTVDGRNYW---TFEYDLEAPGYGV 290 + L + Y+ I + E V G+ Y+ + G Sbjct: 163 VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGK 222 Query: 289 SAFATIAIGNGRYYTLIVTANERRWSRLRNK-LKVVADSFKIS 164 T + +G+ Y A ++RW + K ++ A SF ++ Sbjct: 223 HQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 36.6 bits (83), Expect = 0.063 Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 22/176 (12%) Frame = -3 Query: 625 KYQKNYRSYVXANDGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTD 455 K +KN +G+ P+ W ++ ++ G F+D +V V PT K Sbjct: 90 KPKKNTDFLPYTGEGFKIQIPSKWNPSKEIEYPGQVLRFEDNFDATSNVSVMITPTDKKS 149 Query: 454 IRDLGPMDEAI----FNLVNEVYAA---------PNQIPT--IYEMQERTVDGRNYW--- 329 I D G ++ + + L + Y N + T I E + + G+ Y+ Sbjct: 150 ITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLS 209 Query: 328 TFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSR-LRNKLKVVADSFKIS 164 + G T + G+ Y A ++RW + R ++ A SF ++ Sbjct: 210 VLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 265
>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor| Length = 274 Score = 36.6 bits (83), Expect = 0.063 Identities = 26/60 (43%), Positives = 32/60 (53%) Frame = -3 Query: 346 DGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFKI 167 DGR Y+ FE LE P ++A A GN R Y VT N +W R LK +A SF+I Sbjct: 220 DGRLYYQFE--LEPPHVLITATAA---GN-RLYLFSVTGNGLQWKRHYKDLKRIASSFRI 273
>TL19_ARATH (P82658) Thylakoid lumenal 19 kDa protein, chloroplast precursor| (P19) Length = 229 Score = 35.8 bits (81), Expect = 0.11 Identities = 40/166 (24%), Positives = 66/166 (39%), Gaps = 18/166 (10%) Frame = -3 Query: 613 NYRSYVXANDG-----YSYLYPADWRDF-------DFLGHDSAFKDRNVQLQSVRVAFIP 470 NY Y +D Y Y P W++ G DS F + + + + F+ Sbjct: 70 NYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFL- 128 Query: 469 TQKTDIRDLGPMDEAIFNL------VNEVYAAPNQIPTIYEMQERTVDGRNYWTFEYDLE 308 R L P D + NL + ++ A +++ + E ++ T G+ Y+ +E D Sbjct: 129 ---AGFRQLAPRDVILNNLALSDVELQDLIAGADKVVS-EERKDET--GQVYYLYEID-- 180 Query: 307 APGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVADSFK 170 G G + T+ R Y V A W+R + L + DSFK Sbjct: 181 --GVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFK 224
>PSBP_CHLRE (P11471) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) Length = 245 Score = 35.0 bits (79), Expect = 0.18 Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 25/167 (14%) Frame = -3 Query: 592 ANDGYSYLYPADW---RDFDFLGHDSAFKDRNVQLQSVRVAFIPTQKTDIRDLGPMDEAI 422 A DG++ L PA W ++ DF G ++D + ++ V T K I D G D+ + Sbjct: 79 AGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFL 138 Query: 421 ----FNLVNEVYA---------APNQIPTIYEMQERTV---DGRNYWTFEY-----DLEA 305 + L + Y+ APN++ + T G+ Y+ +E D + Sbjct: 139 ESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDE 198 Query: 304 PGYGVSAFATIAIGNGRYYTLIVTANERRWSRLRNKLKVVA-DSFKI 167 G AT+ N + Y + + ++RW + K + A DSF + Sbjct: 199 GGRHQLIGATVGSDN-KLYIIKIQIGDKRWFKGAKKEAMGAFDSFTV 244
>YTBQ_BACSU (P53560) Hypothetical protein ytbQ| Length = 253 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/73 (30%), Positives = 32/73 (43%) Frame = -3 Query: 403 VYAAPNQIPTIYEMQERTVDGRNYWTFEYDLEAPGYGVSAFATIAIGNGRYYTLIVTANE 224 V+A+ N + +YE R++ GR T +Y L YGV + IG+ Y Sbjct: 108 VFASSNHVTDVYEKDGRSLLGREITTSDYPLSKNLYGVLKLTSEQIGHLFY--------- 158 Query: 223 RRWSRLRNKLKVV 185 L NKL V+ Sbjct: 159 -----LENKLSVI 166
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%) Frame = -3 Query: 520 FKDRNVQLQSVRVAFI-PTQKTDIRDLGPMDEAI 422 FK+R +++Q RVA I P KTD + LG ++EAI Sbjct: 228 FKERPLKIQHSRVAIIKPQAKTDEQALGEIEEAI 261
>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) Length = 1184 Score = 30.0 bits (66), Expect = 5.9 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +2 Query: 92 HQSFARLANGAGGQEEVAQSGVQVGDLEGVGDDFELVAQ-PAPPPLVSG 235 H S L NG +VAQ G+ G L+G + V + PA P L SG Sbjct: 274 HVSREPLKNGEAPSAQVAQKGLAQGPLQGPSKTWRPVPEAPAAPGLCSG 322
>DXR_CHLCV (Q823G9) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 379 Score = 29.6 bits (65), Expect = 7.7 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = +3 Query: 36 IQRAI*IETMVPSSWTGRDTKVSRALQMEPADRKRLPNQAFKSEILKESATT 191 IQ A+ P+ G D V + L+ P D +R P+ ++L+E ++ Sbjct: 267 IQHALTAPKRYPAPHKGIDFSVKQTLEFFPVDEERFPSIGLARQVLREKGSS 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,649,482 Number of Sequences: 219361 Number of extensions: 1761550 Number of successful extensions: 5054 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4833 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5041 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
