ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal22e19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450284.1| Oryza sativa (japonica cultivar-group), mRNA 266 7e-68
2dbj|AK120335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 258 2e-65
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
4dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic D... 115 2e-22
5gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.50
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.50
8ref|NM_180205.1| Arabidopsis thaliana unknown protein AT3G07700 ... 42 2.0
9ref|NM_111649.2| Arabidopsis thaliana unknown protein AT3G07700 ... 42 2.0
10gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
11gb|AY080823.1| Arabidopsis thaliana unknown protein (At3g07700) ... 42 2.0
12emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 i... 42 2.0
13gb|AC022536.13| Homo sapiens chromosome 10 clone RP11-38M7, comp... 42 2.0
14emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in... 42 2.0
15gb|AY056806.1| Arabidopsis thaliana At3g07700/F17A17.4 mRNA, com... 42 2.0
16gb|AF119906.1|AF119906 Homo sapiens PRO2859 mRNA, complete cds 42 2.0
17emb|BX825965.1|CNS0A6HO Arabidopsis thaliana Full-length cDNA Co... 42 2.0
18emb|BX825129.1|CNS0A66K Arabidopsis thaliana Full-length cDNA Co... 42 2.0
19gb|AY088788.1| Arabidopsis thaliana clone 95043 mRNA, complete s... 42 2.0
20dbj|AK120763.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
21gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, com... 40 7.8
22emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chr... 40 7.8
23emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O... 40 7.8
24gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence 40 7.8
25emb|CR386340.1| Gallus gallus finished cDNA, clone ChEST731g19 40 7.8
26gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex B... 40 7.8
27gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, comple... 40 7.8
28dbj|AK174212.1| Ciona intestinalis cDNA, clone:cibd071i22, full ... 40 7.8
29emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in l... 40 7.8
30emb|BX000480.6| Zebrafish DNA sequence from clone DKEY-14C5 in l... 40 7.8 
>ref|XM_450284.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2579

 Score =  266 bits (134), Expect = 7e-68
 Identities = 290/342 (84%)
 Strand = Plus / Minus

                                                                        
Query: 226  atcatcgtctcgaatttctcgagtttcttcactcttcgcatcgatgcaaccagtaatgcc 285
            ||||| ||||||||||| |||||||||||||||||  |||| |||   |  || ||||||
Sbjct: 2185 atcattgtctcgaatttgtcgagtttcttcactctctgcatagatcttatgagcaatgcc 2126

                                                                        
Query: 286  aataaaatgcctgcgccgacgaaagacccatttgcgactatttggtttccttgactagcc 345
            || || ||||||||||| || |||||||| ||||| ||||||||||| ||||| |||  |
Sbjct: 2125 aagaatatgcctgcgccaacaaaagacccgtttgccactatttggttcccttggctactc 2066

                                                                        
Query: 346  atgacgaccccaatattcaagagagtaccacccatggctgtatacatggtcgccatctga 405
            |    ||||||||  ||||| || || ||||| ||||||||||||||||||||||| |||
Sbjct: 2065 aatgtgaccccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttga 2006

                                                                        
Query: 406  agtacgttagctttacgagcagctcgttccgactcaagtactctgactctgagtttcagg 465
            ||||| || || ||||||||||||| ||| |||||||||||||||||||| |||||||| 
Sbjct: 2005 agtacattcgccttacgagcagctctttcagactcaagtactctgactctaagtttcaga 1946

                                                                        
Query: 466  tcacccgactcgagttgccccacaaaatcctcgatccgttggattctgtagggcattgag 525
            ||||| ||||| |||||||| ||||||||||| || || || ||||||||||||||||||
Sbjct: 1945 tcaccggactcaagttgcccaacaaaatcctcaattcgctgtattctgtagggcattgag 1886

                                                      
Query: 526  atcgtagaatcacgggcatcatttgcttgctttcttatctcc 567
            || ||||| ||||| |||   |||||||||||||||||||||
Sbjct: 1885 atggtagagtcacgagcactgtttgcttgctttcttatctcc 1844
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>dbj|AK120335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059I22, full
            insert sequence
          Length = 2579

 Score =  258 bits (130), Expect = 2e-65
 Identities = 289/342 (84%)
 Strand = Plus / Minus

                                                                        
Query: 226  atcatcgtctcgaatttctcgagtttcttcactcttcgcatcgatgcaaccagtaatgcc 285
            ||||| ||||||||||| |||||||||||||||||  |||| |||   |  || ||||||
Sbjct: 2185 atcattgtctcgaatttgtcgagtttcttcactctctgcatagatcttatgagcaatgcc 2126

                                                                        
Query: 286  aataaaatgcctgcgccgacgaaagacccatttgcgactatttggtttccttgactagcc 345
            || || ||||||||||| || |||||||| ||||| ||||||||||| ||||| |||  |
Sbjct: 2125 aagaatatgcctgcgccaacaaaagacccgtttgccactatttggttcccttggctactc 2066

                                                                        
Query: 346  atgacgaccccaatattcaagagagtaccacccatggctgtatacatggtcgccatctga 405
            |    ||||||||  ||||| || || ||||| ||||||||||||||||||||||| |||
Sbjct: 2065 aatgtgaccccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttga 2006

                                                                        
Query: 406  agtacgttagctttacgagcagctcgttccgactcaagtactctgactctgagtttcagg 465
            ||||| || || |||| |||||||| ||| |||||||||||||||||||| |||||||| 
Sbjct: 2005 agtacattcgccttactagcagctctttcagactcaagtactctgactctaagtttcaga 1946

                                                                        
Query: 466  tcacccgactcgagttgccccacaaaatcctcgatccgttggattctgtagggcattgag 525
            ||||| ||||| |||||||| ||||||||||| || || || ||||||||||||||||||
Sbjct: 1945 tcaccggactcaagttgcccaacaaaatcctcaattcgctgtattctgtagggcattgag 1886

                                                      
Query: 526  atcgtagaatcacgggcatcatttgcttgctttcttatctcc 567
            || ||||| ||||| |||   |||||||||||||||||||||
Sbjct: 1885 atggtagagtcacgagcactgtttgcttgctttcttatctcc 1844
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  115 bits (58), Expect = 2e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                           
Query: 438     ctcaagtactctgactctgagtttcaggtcacccgactcgagttgccccacaaaatcctc 497
               |||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 3807556 ctcaagtactctgactctaagtttcagatcaccggactcaagttgcccaacaaaatcctc 3807497

                                                         
Query: 498     gatccgttggattctgtagggcattgagatcgtagaatcacg 539
                || || || |||||||||||||||||||| ||||| |||||
Sbjct: 3807496 aattcgctgtattctgtagggcattgagatggtagagtcacg 3807455



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 121/145 (83%)
 Strand = Plus / Minus

                                                                           
Query: 295     cctgcgccgacgaaagacccatttgcgactatttggtttccttgactagccatgacgacc 354
               |||||||| || |||||||| ||||| ||||||||||| ||||| |||  ||    ||||
Sbjct: 3808066 cctgcgccaacaaaagacccgtttgccactatttggttcccttggctactcaatgtgacc 3808007

                                                                           
Query: 355     ccaatattcaagagagtaccacccatggctgtatacatggtcgccatctgaagtacgtta 414
               ||||  ||||| || || ||||| ||||||||||||||||||||||| |||||||| || 
Sbjct: 3808006 ccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttgaagtacattc 3807947

                                        
Query: 415     gctttacgagcagctcgttccgact 439
               || ||||||||||||| ||| ||||
Sbjct: 3807946 gccttacgagcagctctttcagact 3807922



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 226     atcatcgtctcgaatttctcgagtttcttcactct 260
               ||||| ||||||||||| |||||||||||||||||
Sbjct: 3808381 atcattgtctcgaatttgtcgagtttcttcactct 3808347



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 547     tttgcttgctttcttatctcc 567
               |||||||||||||||||||||
Sbjct: 3807329 tttgcttgctttcttatctcc 3807309
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>dbj|AP005905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1080A02
          Length = 151360

 Score =  115 bits (58), Expect = 2e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                         
Query: 438   ctcaagtactctgactctgagtttcaggtcacccgactcgagttgccccacaaaatcctc 497
             |||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||
Sbjct: 47072 ctcaagtactctgactctaagtttcagatcaccggactcaagttgcccaacaaaatcctc 47013

                                                       
Query: 498   gatccgttggattctgtagggcattgagatcgtagaatcacg 539
              || || || |||||||||||||||||||| ||||| |||||
Sbjct: 47012 aattcgctgtattctgtagggcattgagatggtagagtcacg 46971



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 121/145 (83%)
 Strand = Plus / Minus

                                                                         
Query: 295   cctgcgccgacgaaagacccatttgcgactatttggtttccttgactagccatgacgacc 354
             |||||||| || |||||||| ||||| ||||||||||| ||||| |||  ||    ||||
Sbjct: 47582 cctgcgccaacaaaagacccgtttgccactatttggttcccttggctactcaatgtgacc 47523

                                                                         
Query: 355   ccaatattcaagagagtaccacccatggctgtatacatggtcgccatctgaagtacgtta 414
             ||||  ||||| || || ||||| ||||||||||||||||||||||| |||||||| || 
Sbjct: 47522 ccaacgttcaacagcgtgccaccaatggctgtatacatggtcgccatttgaagtacattc 47463

                                      
Query: 415   gctttacgagcagctcgttccgact 439
             || ||||||||||||| ||| ||||
Sbjct: 47462 gccttacgagcagctctttcagact 47438



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 226   atcatcgtctcgaatttctcgagtttcttcactct 260
             ||||| ||||||||||| |||||||||||||||||
Sbjct: 47897 atcattgtctcgaatttgtcgagtttcttcactct 47863



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 547   tttgcttgctttcttatctcc 567
             |||||||||||||||||||||
Sbjct: 46845 tttgcttgctttcttatctcc 46825
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>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 70    aagttacaacattttcaggaag 91
             ||||||||||||||||||||||
Sbjct: 22087 aagttacaacattttcaggaag 22108
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 70       aagttacaacattttcaggaag 91
                ||||||||||||||||||||||
Sbjct: 21670034 aagttacaacattttcaggaag 21670055



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 545      catttgcttgctttcttatct 565
                |||||||||||||||||||||
Sbjct: 11244968 catttgcttgctttcttatct 11244988
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 70       aagttacaacattttcaggaag 91
                ||||||||||||||||||||||
Sbjct: 21980233 aagttacaacattttcaggaag 21980254



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 545      catttgcttgctttcttatct 565
                |||||||||||||||||||||
Sbjct: 11324157 catttgcttgctttcttatct 11324177
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>ref|NM_180205.1| Arabidopsis thaliana unknown protein AT3G07700 transcript variant
            AT3G07700.2 mRNA, complete cds
          Length = 2389

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 383  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 442
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 2023 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1964

             
Query: 443  g 443
            |
Sbjct: 1963 g 1963
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>ref|NM_111649.2| Arabidopsis thaliana unknown protein AT3G07700 transcript variant
            AT3G07700.1 mRNA, complete cds
          Length = 2478

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 383  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 442
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 2112 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 2053

             
Query: 443  g 443
            |
Sbjct: 2052 g 2052
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 545   catttgcttgctttcttatct 565
             |||||||||||||||||||||
Sbjct: 31326 catttgcttgctttcttatct 31346
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>gb|AY080823.1| Arabidopsis thaliana unknown protein (At3g07700) mRNA, partial cds
          Length = 1897

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 383  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 442
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 1540 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1481

             
Query: 443  g 443
            |
Sbjct: 1480 g 1480
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>emb|CR385046.9| Zebrafish DNA sequence from clone CH211-217P23 in linkage group 8,
              complete sequence
          Length = 206751

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 187    gtttttatgcacatttccataatga 211
              ||||||||||||||||||| |||||
Sbjct: 145193 gtttttatgcacatttccaaaatga 145169
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>gb|AC022536.13| Homo sapiens chromosome 10 clone RP11-38M7, complete sequence
          Length = 160678

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 119   attatttacctatgaatgagaaagc 143
             ||||||||||| |||||||||||||
Sbjct: 65756 attatttacctctgaatgagaaagc 65732
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>emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in linkage group 15,
             complete sequence
          Length = 164720

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 188   tttttatgcacatttccataa 208
             |||||||||||||||||||||
Sbjct: 42341 tttttatgcacatttccataa 42361
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>gb|AY056806.1| Arabidopsis thaliana At3g07700/F17A17.4 mRNA, complete cds
          Length = 2388

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 383  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 442
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 2022 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 1963

             
Query: 443  g 443
            |
Sbjct: 1962 g 1962
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>gb|AF119906.1|AF119906 Homo sapiens PRO2859 mRNA, complete cds
          Length = 1779

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 119 attatttacctatgaatgagaaagc 143
           ||||||||||| |||||||||||||
Sbjct: 286 attatttacctctgaatgagaaagc 310
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>emb|BX825965.1|CNS0A6HO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL76ZE08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 623

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 383 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 442
           |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 319 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 260

            
Query: 443 g 443
           |
Sbjct: 259 g 259
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>emb|BX825129.1|CNS0A66K Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL13ZE11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 684

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                       
Query: 383 ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 442
           |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 341 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 282

            
Query: 443 g 443
           |
Sbjct: 281 g 281
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>gb|AY088788.1| Arabidopsis thaliana clone 95043 mRNA, complete sequence
          Length = 2430

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                        
Query: 383  ctgtatacatggtcgccatctgaagtacgttagctttacgagcagctcgttccgactcaa 442
            |||||||||| ||||||||||| ||||   | ||||| || || |||| |||||||||||
Sbjct: 2112 ctgtatacatcgtcgccatctgcagtattgtcgctttccgggctgctctttccgactcaa 2053

             
Query: 443  g 443
            |
Sbjct: 2052 g 2052
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>dbj|AK120763.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007G17, full
            insert sequence
          Length = 4190

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 545  catttgcttgctttcttatct 565
            |||||||||||||||||||||
Sbjct: 2359 catttgcttgctttcttatct 2379
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>gb|AC132871.7| Mus musculus chromosome 1, clone RP24-387A12, complete sequence
          Length = 188649

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tctacatatattatttacct 129
             ||||||||||||||||||||
Sbjct: 92231 tctacatatattatttacct 92212
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>emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chromosome 1 Contains the
             5' end of the CLSTN1 gene for calsyntenin 1, the CTNNBIP1
             gene for catenin, beta interacting protein 1, two novel
             genes, the LZIC gene for leucine zipper and CTNNBIP1
             domain containing, the 5' end of the NMNAT1 gene for
             nicotinamide nucleotide adenylyltransferase 1 and a CpG
             island, complete sequence
          Length = 177470

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   atatattatttacctatgaa 134
             ||||||||||||||||||||
Sbjct: 21028 atatattatttacctatgaa 21047
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>emb|AL110115.38|HSJ324O17 Human DNA sequence from clone RP3-324O17 on chromosome 20 Contains
            the 5' end of the ID1 gene for inhibitor of DNA binding
            1, dominant negative helix-loop-helix protein, two novel
            genes, the 3' end of the HM13 gene for histocompatibility
            (minor) 13 an MCT-1 (multiple copies in a T-cell
            malignancies) pseudogene and five CpG islands, complete
            sequence
          Length = 79419

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ttatttacctatgaatgaga 139
            ||||||||||||||||||||
Sbjct: 3737 ttatttacctatgaatgaga 3718
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>gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence
          Length = 189610

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cttggtttttatgcacattt 202
              ||||||||||||||||||||
Sbjct: 183304 cttggtttttatgcacattt 183285
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>emb|CR386340.1| Gallus gallus finished cDNA, clone ChEST731g19
          Length = 958

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 atttaatttctttacagaag 170
           ||||||||||||||||||||
Sbjct: 388 atttaatttctttacagaag 407
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>gb|AC148674.1| Macaca mulatta Major Histocompatibility Complex BAC MMU103F20, complete
             sequence
          Length = 174172

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 373   ccacccatggctgtatacatggtc 396
             |||||||||| |||||||||||||
Sbjct: 32092 ccacccatggttgtatacatggtc 32115
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>gb|AC011246.6| Homo sapiens BAC clone RP11-498O20 from 2, complete sequence
          Length = 220183

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    gaagcacagcgatcacatca 229
              ||||||||||||||||||||
Sbjct: 108849 gaagcacagcgatcacatca 108868
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>dbj|AK174212.1| Ciona intestinalis cDNA, clone:cibd071i22, full insert sequence
          Length = 1401

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 508  attctgtagggcattgagat 527
            ||||||||||||||||||||
Sbjct: 1139 attctgtagggcattgagat 1120
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>emb|BX470160.9| Zebrafish DNA sequence from clone DKEY-25F3 in linkage group 18,
             complete sequence
          Length = 207501

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 187   gtttttatgcacatttccataatg 210
             |||||||||||||||| |||||||
Sbjct: 12219 gtttttatgcacattttcataatg 12196
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>emb|BX000480.6| Zebrafish DNA sequence from clone DKEY-14C5 in linkage group 17, complete
              sequence
          Length = 191781

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 273    aaccagtaatgccaataaaa 292
              ||||||||||||||||||||
Sbjct: 162590 aaccagtaatgccaataaaa 162571


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,083,329
Number of Sequences: 3902068
Number of extensions: 5083329
Number of successful extensions: 105450
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105260
Number of HSP's gapped (non-prelim): 190
length of query: 571
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 548
effective length of database: 17,143,297,704
effective search space: 9394527141792
effective search space used: 9394527141792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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