>COX1_BRAJA (P31833) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I) (Cytochrome aa3 subunit 1)
          Length = 541

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 253 YWFEKLTWIHYHTLSHTLFFWVVAVGVGTV 164
           YWF K+T   Y+       FWV  +GV  V
Sbjct: 422 YWFPKMTGYMYNETLAKAHFWVTFIGVNLV 451

>COX1_METSE (Q35101) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 530

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 253 YWFEKLTWIHYHTLSHTLFFWVVAVGV 173
           +WF K+T   Y+ L   + FW++ +GV
Sbjct: 398 FWFGKITGYCYNELYGKIHFWIMFIGV 424

>RUVA_SYMTH (Q67Q98) Holliday junction ATP-dependent DNA helicase ruvA (EC|
           3.6.1.-)
          Length = 205

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 26  ASTSSQTPRRSALLRLYTYQHIRE 97
           AST S+ P + A ++LYTY  +RE
Sbjct: 32  ASTRSRLPAQGAAVQLYTYLQVRE 55

>COX1_SCHPO (P07657) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 537

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 259 ALYWFEKLTWIHYHTLSHTLFFWVVAVGVGTVQDRTHXM 143
           A YW  K+  + Y+    ++ FW++ +GV  V    H +
Sbjct: 399 AYYWSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFL 437

>Y105_MYCBO (P64690) Hypothetical protein Mb0105|
          Length = 661

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 289 YSSPFFDPAIALYWFEKLTWIHYHTLSHTLFFWVV 185
           Y +P FD  +  +W  +   IH+  + + LF+W +
Sbjct: 503 YFTPLFDTFVRYHWGHEFMAIHFLVVGY-LFYWAI 536

>Y102_MYCTU (P64689) Hypothetical protein Rv0102/MT0111|
          Length = 661

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 289 YSSPFFDPAIALYWFEKLTWIHYHTLSHTLFFWVV 185
           Y +P FD  +  +W  +   IH+  + + LF+W +
Sbjct: 503 YFTPLFDTFVRYHWGHEFMAIHFLVVGY-LFYWAI 536

>PDLI4_MOUSE (P70271) PDZ and LIM domain protein 4 (LIM protein RIL)|
           (Reversion-induced LIM protein)
          Length = 330

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 97  NNQSXNGLSLPTQLSSXCVFYPVLXQLLRQLPKKTEC 207
           +N S N  +LP Q+S+  V  P      R LP+  +C
Sbjct: 146 HNGSSNEATLPAQMSALHVSPPTSADTARVLPRNRDC 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,298,008
Number of Sequences: 219361
Number of extensions: 675517
Number of successful extensions: 1368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)