ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal21n16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104896.1| Zea mays PCO096815 mRNA sequence 180 2e-42
2gb|BT018153.1| Zea mays clone EL01N0555H10.c mRNA sequence 149 8e-33
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 125 1e-25
4gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare sta... 125 1e-25
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
6gb|AC174350.4| Medicago truncatula clone mth2-3g18, complete seq... 78 3e-11
7emb|BX825787.1|CNS0A7PL Arabidopsis thaliana Full-length cDNA Co... 62 2e-06
8ref|NM_111506.3| Arabidopsis thaliana NADH dehydrogenase (ubiqui... 60 6e-06
9gb|DQ226708.1| Boechera divaricarpa isolate SLW-A-B03 mRNA sequence 60 6e-06
10gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC... 60 6e-06
11gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC... 60 6e-06
12gb|AY128825.1| Arabidopsis thaliana unknown protein (At3g06310) ... 60 6e-06
13gb|AY093230.1| Arabidopsis thaliana unknown protein (At3g06310) ... 60 6e-06
14gb|AY087020.1| Arabidopsis thaliana clone 30584 mRNA, complete s... 60 6e-06
15gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 58 2e-05
16ref|NM_121885.3| Arabidopsis thaliana NADH dehydrogenase (ubiqui... 56 9e-05
17ref|NM_180518.2| Arabidopsis thaliana NADH dehydrogenase (ubiqui... 56 9e-05
18emb|BX833942.1|CNS09ZBR Arabidopsis thaliana Full-length cDNA Co... 56 9e-05
19emb|BX833066.1|CNS09Z9X Arabidopsis thaliana Full-length cDNA Co... 56 9e-05
20gb|BT004782.1| Arabidopsis thaliana At5g18800 gene, complete cds 56 9e-05
21gb|AY084313.1| Arabidopsis thaliana clone 10381 mRNA, complete s... 56 9e-05
22gb|AC068655.3|AC068655 Genomic Sequence For Arabidopsis thaliana... 56 9e-05
23gb|DQ415921.1| Cleome spinosa clone BAC Cs2, complete sequence 54 4e-04
24ref|NM_025958.1| Mus musculus cullin-associated and neddylation-... 42 1.4
25ref|NM_181362.1| Rattus norvegicus cullin-associated and neddyla... 42 1.4
26dbj|AK145112.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD... 42 1.4
27gb|BC056365.1| Mus musculus cullin-associated and neddylation-di... 42 1.4
28gb|BC058338.1| Mus musculus cullin-associated and neddylation-di... 42 1.4
29dbj|AK129186.1| Mus musculus mRNA for mKIAA0667 protein 42 1.4
30dbj|AB029342.1| Rattus norvegicus mRNA for TIP120-family protein... 42 1.4
31dbj|AB029341.1| Rattus norvegicus mRNA for TIP120-family protein... 42 1.4
32dbj|AB029324.1| Rattus norvegicus mRNA for TIP120-family protein... 42 1.4
33gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
34gb|AC139130.10| Mus musculus chromosome 15, clone RP23-210B16, c... 40 5.5
35gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.5
36ref|XM_414136.1| PREDICTED: Gallus gallus similar to system asc ... 40 5.5
37gb|AC129574.8| Mus musculus chromosome 16, clone RP23-78C2, comp... 40 5.5
38gb|AC157518.6| Mus musculus BAC clone RP23-457D23 from chromosom... 40 5.5
39emb|Z84470.1|HS411B6 Human DNA sequence from clone RP3-411B6 on ... 40 5.5
40emb|AL139186.16| Human DNA sequence from clone RP11-76N11 on chr... 40 5.5
41gb|AC106714.7| Homo sapiens X BAC RP11-399D20 (Roswell Park Canc... 40 5.5
42dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
45ref|XM_343952.2| PREDICTED: Rattus norvegicus similar to Breast ... 40 5.5
46dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
47dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
48dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
49dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
50gb|AC005323.1|AC005323 Homo sapiens chromosome 17, clone hRPK.79... 40 5.5
51emb|CR376782.8| Zebrafish DNA sequence from clone CH211-235O4 in... 40 5.5
52dbj|AP000756.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.5
53gb|AC005209.1|AC005209 Homo sapiens chromosome 17, clone hRPK.62... 40 5.5
54gb|AC004384.1|AC004384 Human Chromosome X clone bWXD531, complet... 40 5.5
55gb|AC004385.1|AC004385 Human Chromosome X clone bWXD547, complet... 40 5.5
56gb|M97918.1|YSCSWI4A Saccharomyces cerevisiae SWI4 gene, promote... 40 5.5
57gb|AC154653.2| Mus musculus BAC clone RP24-262N5 from chromosome... 40 5.5
58dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5 
>gb|AY104896.1| Zea mays PCO096815 mRNA sequence
          Length = 879

 Score =  180 bits (91), Expect = 2e-42
 Identities = 151/171 (88%)
 Strand = Plus / Minus

                                                                       
Query: 244 ctactcggaaatagggcacgcaccctcgaaagcttcctgctccttgcggcagaagtcaaa 303
           |||||| ||||| ||||| ||  |||| ||||||| ||||||||| ||||||||||| ||
Sbjct: 453 ctactcagaaatggggcaggcttcctcaaaagcttgctgctccttacggcagaagtcgaa 394

                                                                       
Query: 304 ttcattcgtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttg 363
           ||| || ||||||||||||||||| ||||||||  ||||||| |||||||| ||||||||
Sbjct: 393 ttcgttggtgtagtaatacatgcaaccagcatattcatccatttccttgggacacttttg 334

                                                              
Query: 364 gtgtagttctttcaacaggttgaagacgcagcgcgtgacctggcggccctt 414
           ||| ||||||||||||||| ||| ||||||||| |||||||||||||||||
Sbjct: 333 gtgaagttctttcaacaggctgaggacgcagcgtgtgacctggcggccctt 283
to top
>gb|BT018153.1| Zea mays clone EL01N0555H10.c mRNA sequence
          Length = 774

 Score =  149 bits (75), Expect = 8e-33
 Identities = 147/171 (85%)
 Strand = Plus / Minus

                                                                       
Query: 244 ctactcggaaatagggcacgcaccctcgaaagcttcctgctccttgcggcagaagtcaaa 303
           |||||||||||| ||||| |   |||| ||||||| ||||||||| ||||||||||| ||
Sbjct: 389 ctactcggaaatggggcaggattcctcaaaagcttgctgctccttacggcagaagtcgaa 330

                                                                       
Query: 304 ttcattcgtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttg 363
           ||| || ||||||||||||||||| ||||||||  ||||||| |||||||| ||||||||
Sbjct: 329 ttcgttggtgtagtaatacatgcaaccagcatattcatccatttccttgggacacttttg 270

                                                              
Query: 364 gtgtagttctttcaacaggttgaagacgcagcgcgtgacctggcggccctt 414
            || ||||||||||||||| | | ||||||||  ||||||||||| |||||
Sbjct: 269 atgaagttctttcaacaggctaaggacgcagcttgtgacctggcgaccctt 219
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 1e-25
 Identities = 108/123 (87%)
 Strand = Plus / Minus

                                                                            
Query: 257      gggcacgcaccctcgaaagcttcctgctccttgcggcagaagtcaaattcattcgtgtag 316
                ||||| |||| ||| ||| ||| ||||||||| || |||||||||||||| || ||||||
Sbjct: 10302136 gggcatgcactctcaaaatcttgctgctccttacgacagaagtcaaattcgttggtgtag 10302077

                                                                            
Query: 317      taatacatgcacccagcatacgcatccatctccttggggcacttttggtgtagttctttc 376
                ||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct: 10302076 taatacatgcagccggcataggcgtccatctccttggggcacttctggtgaagttctttc 10302017

                   
Query: 377      aac 379
                |||
Sbjct: 10302016 aac 10302014



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 378      acaggttgaagacgcagcgcgtgacctggcggccctt 414
                |||||| ||||||||||||| ||||||||||||||||
Sbjct: 10297257 acaggtcgaagacgcagcgcttgacctggcggccctt 10297221



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 49/57 (85%), Gaps = 5/57 (8%)
 Strand = Plus / Minus

                                                                         
Query: 145      acaataaacatgggagatcatcaacttgctaggtttgccggcttt-tctccttattt 200
                |||| |||||||||||||||| ||||||    ||||| ||||||| |||||||||||
Sbjct: 10302238 acaacaaacatgggagatcatgaacttg----gtttgtcggctttttctccttattt 10302186
to top
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone
             OSJNBb0036D03, from chromosome 3, complete sequence
          Length = 125800

 Score =  125 bits (63), Expect = 1e-25
 Identities = 108/123 (87%)
 Strand = Plus / Minus

                                                                         
Query: 257   gggcacgcaccctcgaaagcttcctgctccttgcggcagaagtcaaattcattcgtgtag 316
             ||||| |||| ||| ||| ||| ||||||||| || |||||||||||||| || ||||||
Sbjct: 15602 gggcatgcactctcaaaatcttgctgctccttacgacagaagtcaaattcgttggtgtag 15543

                                                                         
Query: 317   taatacatgcacccagcatacgcatccatctccttggggcacttttggtgtagttctttc 376
             ||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct: 15542 taatacatgcagccggcataggcgtccatctccttggggcacttctggtgaagttctttc 15483

                
Query: 377   aac 379
             |||
Sbjct: 15482 aac 15480



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 378   acaggttgaagacgcagcgcgtgacctggcggccctt 414
             |||||| ||||||||||||| ||||||||||||||||
Sbjct: 10723 acaggtcgaagacgcagcgcttgacctggcggccctt 10687



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 49/57 (85%), Gaps = 5/57 (8%)
 Strand = Plus / Minus

                                                                      
Query: 145   acaataaacatgggagatcatcaacttgctaggtttgccggctttt-ctccttattt 200
             |||| |||||||||||||||| ||||||    ||||| |||||||| ||||||||||
Sbjct: 15704 acaacaaacatgggagatcatgaacttg----gtttgtcggctttttctccttattt 15652
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 1e-25
 Identities = 108/123 (87%)
 Strand = Plus / Minus

                                                                            
Query: 257      gggcacgcaccctcgaaagcttcctgctccttgcggcagaagtcaaattcattcgtgtag 316
                ||||| |||| ||| ||| ||| ||||||||| || |||||||||||||| || ||||||
Sbjct: 10300237 gggcatgcactctcaaaatcttgctgctccttacgacagaagtcaaattcgttggtgtag 10300178

                                                                            
Query: 317      taatacatgcacccagcatacgcatccatctccttggggcacttttggtgtagttctttc 376
                ||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||||||
Sbjct: 10300177 taatacatgcagccggcataggcgtccatctccttggggcacttctggtgaagttctttc 10300118

                   
Query: 377      aac 379
                |||
Sbjct: 10300117 aac 10300115



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 378      acaggttgaagacgcagcgcgtgacctggcggccctt 414
                |||||| ||||||||||||| ||||||||||||||||
Sbjct: 10295358 acaggtcgaagacgcagcgcttgacctggcggccctt 10295322



 Score = 40.1 bits (20), Expect = 5.5
 Identities = 49/57 (85%), Gaps = 5/57 (8%)
 Strand = Plus / Minus

                                                                         
Query: 145      acaataaacatgggagatcatcaacttgctaggtttgccggctttt-ctccttattt 200
                |||| |||||||||||||||| ||||||    ||||| |||||||| ||||||||||
Sbjct: 10300339 acaacaaacatgggagatcatgaacttg----gtttgtcggctttttctccttattt 10300287
to top
>gb|AC174350.4| Medicago truncatula clone mth2-3g18, complete sequence
          Length = 77292

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 275   gcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgcacccagca 334
             ||||||||||| |||||||| |||||||||||||| || | ||| |||||||| ||| | 
Sbjct: 44365 gcttcctgctctttgcggcacaagtcaaattcatttgtatggtagtacatgcaaccaacg 44306

                                                
Query: 335   tacgcatccatctccttggggcacttttggtgtag 369
             ||  | ||||||||||| | |||||||||||||||
Sbjct: 44305 taatcgtccatctcctttgtgcacttttggtgtag 44271
to top
>emb|BX825787.1|CNS0A7PL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL62ZD09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 679

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                       
Query: 272 aaagcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgcaccca 331
           |||||||| ||||| || || || || ||||| || || ||||||||||||||||| |||
Sbjct: 362 aaagcttcttgctctttccgacacaactcaaactcgttggtgtagtaatacatgcatcca 303

                                              
Query: 332 gcatacgcatccatctccttggggcacttttggtg 366
            | || |||||||||||||| ||||| || |||||
Sbjct: 302 acgtaagcatccatctcctttgggcatttctggtg 268
to top
>ref|NM_111506.3| Arabidopsis thaliana NADH dehydrogenase (ubiquinone) AT3G06310
           mRNA, complete cds
          Length = 739

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 272 aaagcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgcaccca 331
           |||||||| ||||| || || || || ||||| || || ||||||||||||||||| |||
Sbjct: 426 aaagcttcttgctctttccgacacaactcaaactcgttggtgtagtaatacatgcatcca 367

                                     
Query: 332 gcatacgcatccatctccttggggca 357
            | || |||||||||||||| |||||
Sbjct: 366 acgtaagcatccatctcctttgggca 341
to top
>gb|DQ226708.1| Boechera divaricarpa isolate SLW-A-B03 mRNA sequence
          Length = 488

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                       
Query: 268 ctcgaaagcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgca 327
           |||||| ||||| ||||| || || || || ||||| || || |||||||||||||||||
Sbjct: 174 ctcgaaggcttcttgctctttccgacacaaatcaaactcgttggtgtagtaatacatgca 233

                                         
Query: 328 cccagcatacgcatccatctccttggggca 357
            ||| | || |||||||||||||| |||||
Sbjct: 234 tccaacgtaagcatccatctcctttgggca 263
to top
>gb|AC011623.5|ATAC011623 Arabidopsis thaliana chromosome III BAC F24P17 genomic sequence,
             complete sequence
          Length = 86022

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                         
Query: 272   aaagcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgcaccca 331
             |||||||| ||||| || || || || ||||| || || ||||||||||||||||| |||
Sbjct: 79011 aaagcttcttgctctttccgacacaactcaaactcgttggtgtagtaatacatgcatcca 78952

                                       
Query: 332   gcatacgcatccatctccttggggca 357
              | || |||||||||||||| |||||
Sbjct: 78951 acgtaagcatccatctcctttgggca 78926
to top
>gb|AC018907.5|ATAC018907 Arabidopsis thaliana chromosome III BAC F28L1 genomic sequence,
             complete sequence
          Length = 93478

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Plus

                                                                         
Query: 272   aaagcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgcaccca 331
             |||||||| ||||| || || || || ||||| || || ||||||||||||||||| |||
Sbjct: 79478 aaagcttcttgctctttccgacacaactcaaactcgttggtgtagtaatacatgcatcca 79537

                                       
Query: 332   gcatacgcatccatctccttggggca 357
              | || |||||||||||||| |||||
Sbjct: 79538 acgtaagcatccatctcctttgggca 79563
to top
>gb|AY128825.1| Arabidopsis thaliana unknown protein (At3g06310) mRNA, complete cds
          Length = 483

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 272 aaagcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgcaccca 331
           |||||||| ||||| || || || || ||||| || || ||||||||||||||||| |||
Sbjct: 302 aaagcttcttgctctttccgacacaactcaaactcgttggtgtagtaatacatgcatcca 243

                                     
Query: 332 gcatacgcatccatctccttggggca 357
            | || |||||||||||||| |||||
Sbjct: 242 acgtaagcatccatctcctttgggca 217
to top
>gb|AY093230.1| Arabidopsis thaliana unknown protein (At3g06310) mRNA, complete cds
          Length = 587

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 272 aaagcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgcaccca 331
           |||||||| ||||| || || || || ||||| || || ||||||||||||||||| |||
Sbjct: 396 aaagcttcttgctctttccgacacaactcaaactcgttggtgtagtaatacatgcatcca 337

                                     
Query: 332 gcatacgcatccatctccttggggca 357
            | || |||||||||||||| |||||
Sbjct: 336 acgtaagcatccatctcctttgggca 311
to top
>gb|AY087020.1| Arabidopsis thaliana clone 30584 mRNA, complete sequence
          Length = 650

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 272 aaagcttcctgctccttgcggcagaagtcaaattcattcgtgtagtaatacatgcaccca 331
           |||||||| ||||| || || || || ||||| || || ||||||||||||||||| |||
Sbjct: 403 aaagcttcttgctctttccgacacaactcaaactcgttggtgtagtaatacatgcatcca 344

                                     
Query: 332 gcatacgcatccatctccttggggca 357
            | || |||||||||||||| |||||
Sbjct: 343 acgtaagcatccatctcctttgggca 318
to top
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                   
Query: 378    acaggttgaagacgcagcgcgtgacctggcggccctt 414
              |||||| ||||||||||||| ||||||||||||||||
Sbjct: 158670 acaggtcgaagacgcagcgcttgacctggcggccctt 158634
to top
>ref|NM_121885.3| Arabidopsis thaliana NADH dehydrogenase (ubiquinone) AT5G18800
           transcript variant AT5G18800.1 mRNA, complete cds
          Length = 646

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 311 gtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttggtg 366
           |||||||||||||| |||||| ||||  |||||||||||||  ||||||| |||||
Sbjct: 361 gtgtagtaatacatacacccaacataatcatccatctccttttggcacttctggtg 306
to top
>ref|NM_180518.2| Arabidopsis thaliana NADH dehydrogenase (ubiquinone) AT5G18800
           transcript variant AT5G18800.2 mRNA, complete cds
          Length = 633

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 311 gtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttggtg 366
           |||||||||||||| |||||| ||||  |||||||||||||  ||||||| |||||
Sbjct: 348 gtgtagtaatacatacacccaacataatcatccatctccttttggcacttctggtg 293
to top
>emb|BX833942.1|CNS09ZBR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL84ZG10 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 486

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 311 gtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttggtg 366
           |||||||||||||| |||||| ||||  |||||||||||||  ||||||| |||||
Sbjct: 344 gtgtagtaatacatacacccaacataatcatccatctccttttggcacttctggtg 289
to top
>emb|BX833066.1|CNS09Z9X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL32ZD07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 473

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 311 gtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttggtg 366
           |||||||||||||| |||||| ||||  |||||||||||||  ||||||| |||||
Sbjct: 188 gtgtagtaatacatacacccaacataatcatccatctccttttggcacttctggtg 133
to top
>gb|BT004782.1| Arabidopsis thaliana At5g18800 gene, complete cds
          Length = 321

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 311 gtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttggtg 366
           |||||||||||||| |||||| ||||  |||||||||||||  ||||||| |||||
Sbjct: 257 gtgtagtaatacatacacccaacataatcatccatctccttttggcacttctggtg 202
to top
>gb|AY084313.1| Arabidopsis thaliana clone 10381 mRNA, complete sequence
          Length = 569

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 311 gtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttggtg 366
           |||||||||||||| |||||| ||||  |||||||||||||  ||||||| |||||
Sbjct: 361 gtgtagtaatacatacacccaacataatcatccatctccttttggcacttctggtg 306
to top
>gb|AC068655.3|AC068655 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome
             V, complete sequence
          Length = 89453

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                     
Query: 311   gtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttggtg 366
             |||||||||||||| |||||| ||||  |||||||||||||  ||||||| |||||
Sbjct: 67958 gtgtagtaatacatacacccaacataatcatccatctccttttggcacttctggtg 68013
to top
>gb|DQ415921.1| Cleome spinosa clone BAC Cs2, complete sequence
          Length = 132380

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 311  gtgtagtaatacatgcacccagcatacgcatccatctccttggggcacttttggtgtagt 370
            ||||||||||||| ||| ||  ||||||||||||||||||| | ||| || ||||| || 
Sbjct: 2111 gtgtagtaatacaggcaacccacatacgcatccatctccttcgtgcatttctggtgaaga 2052

                   
Query: 371  tctttca 377
            |||||||
Sbjct: 2051 tctttca 2045
to top
>ref|NM_025958.1| Mus musculus cullin-associated and neddylation-dissociated 2
           (putative) (Cand2), mRNA
          Length = 4798

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 341 tccatctccttggggcacttt 361
           |||||||||||||||||||||
Sbjct: 917 tccatctccttggggcacttt 897
to top
>ref|NM_181362.1| Rattus norvegicus cullin-associated and neddylation-dissociated 2
           (putative) (Cand2), mRNA
          Length = 4322

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 341 tccatctccttggggcacttt 361
           |||||||||||||||||||||
Sbjct: 936 tccatctccttggggcacttt 916
to top
>dbj|AK145112.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN
           full-length enriched library, clone:G830046K22
           product:TIP120-family protein TIP120B homolog [Rattus
           norvegicus], full insert sequence
          Length = 4747

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 341 tccatctccttggggcacttt 361
           |||||||||||||||||||||
Sbjct: 920 tccatctccttggggcacttt 900
to top
>gb|BC056365.1| Mus musculus cullin-associated and neddylation-dissociated 2
           (putative), mRNA (cDNA clone MGC:73507 IMAGE:6824847),
           complete cds
          Length = 4798

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 341 tccatctccttggggcacttt 361
           |||||||||||||||||||||
Sbjct: 917 tccatctccttggggcacttt 897
to top
>gb|BC058338.1| Mus musculus cullin-associated and neddylation-dissociated 2
           (putative), mRNA (cDNA clone IMAGE:5706884)
          Length = 4619

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 341 tccatctccttggggcacttt 361
           |||||||||||||||||||||
Sbjct: 750 tccatctccttggggcacttt 730
to top
>dbj|AK129186.1| Mus musculus mRNA for mKIAA0667 protein
          Length = 4267

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 341 tccatctccttggggcacttt 361
           |||||||||||||||||||||
Sbjct: 906 tccatctccttggggcacttt 886
to top
>dbj|AB029342.1| Rattus norvegicus mRNA for TIP120-family protein TIP120B, short form,
            complete cds
          Length = 4461

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 341  tccatctccttggggcacttt 361
            |||||||||||||||||||||
Sbjct: 1075 tccatctccttggggcacttt 1055
to top
>dbj|AB029341.1| Rattus norvegicus mRNA for TIP120-family protein TIP120B,
            alternatiely spliced form, complete cds
          Length = 4436

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 341  tccatctccttggggcacttt 361
            |||||||||||||||||||||
Sbjct: 1050 tccatctccttggggcacttt 1030
to top
>dbj|AB029324.1| Rattus norvegicus mRNA for TIP120-family protein TIP120B, complete
           cds
          Length = 4322

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 341 tccatctccttggggcacttt 361
           |||||||||||||||||||||
Sbjct: 936 tccatctccttggggcacttt 916
to top
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07,
             complete sequence
          Length = 164477

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   aataaacatgggagatcatc 166
             ||||||||||||||||||||
Sbjct: 31410 aataaacatgggagatcatc 31429
to top
>gb|AC139130.10| Mus musculus chromosome 15, clone RP23-210B16, complete sequence
          Length = 198154

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 353   gggcacttttggtgtagttctttc 376
             ||||||||||||||||||| ||||
Sbjct: 36767 gggcacttttggtgtagttatttc 36790
to top
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10,
             complete sequence
          Length = 140282

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   aataaacatgggagatcatc 166
             ||||||||||||||||||||
Sbjct: 99429 aataaacatgggagatcatc 99448
to top
>ref|XM_414136.1| PREDICTED: Gallus gallus similar to system asc amino acid transporter
            Asc-1 (LOC415774), mRNA
          Length = 2877

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 388  gacgcagcgcgtgacctggcggcc 411
            ||||||| ||||||||||||||||
Sbjct: 2711 gacgcagtgcgtgacctggcggcc 2688
to top
>gb|AC129574.8| Mus musculus chromosome 16, clone RP23-78C2, complete sequence
          Length = 214649

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gctcaacaaagacaagcaaa 101
              ||||||||||||||||||||
Sbjct: 196097 gctcaacaaagacaagcaaa 196078
to top
>gb|AC157518.6| Mus musculus BAC clone RP23-457D23 from chromosome 15, complete
            sequence
          Length = 172962

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 353  gggcacttttggtgtagttctttc 376
            ||||||||||||||||||| ||||
Sbjct: 1562 gggcacttttggtgtagttatttc 1539
to top
>emb|Z84470.1|HS411B6 Human DNA sequence from clone RP3-411B6 on chromosome X, complete
             sequence
          Length = 149526

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   ttttctccttatttctcaag 206
             ||||||||||||||||||||
Sbjct: 16439 ttttctccttatttctcaag 16458
to top
>emb|AL139186.16| Human DNA sequence from clone RP11-76N11 on chromosome 13 Contains the
             5' end of the DACH gene for dachshund homolog (Drosophila)
             (DACH1 FLJ10138), a ribosomal protein L35 (RPL35)
             pseudogene and a CpG island, complete sequence
          Length = 157081

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     aacattaacaacagtaacaa 20
             ||||||||||||||||||||
Sbjct: 21258 aacattaacaacagtaacaa 21239
to top
>gb|AC106714.7| Homo sapiens X BAC RP11-399D20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 172543

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   cttttctccttatttctcaa 205
             ||||||||||||||||||||
Sbjct: 68836 cttttctccttatttctcaa 68855
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     tcaatttcatccatacaaaa 134
               ||||||||||||||||||||
Sbjct: 4031832 tcaatttcatccatacaaaa 4031851
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 115      tcaatttcatccatacaaaa 134
                ||||||||||||||||||||
Sbjct: 13218985 tcaatttcatccatacaaaa 13219004
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    aataaacatgggagatcatc 166
              ||||||||||||||||||||
Sbjct: 826987 aataaacatgggagatcatc 827006
to top
>ref|XM_343952.2| PREDICTED: Rattus norvegicus similar to Breast carcinoma amplified
            sequence 3 homolog (K20D4) (LOC363662), mRNA
          Length = 5593

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 279  cctgctccttgcggcagaag 298
            ||||||||||||||||||||
Sbjct: 2161 cctgctccttgcggcagaag 2180
to top
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0066B06
          Length = 154025

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    tcaatttcatccatacaaaa 134
              ||||||||||||||||||||
Sbjct: 137312 tcaatttcatccatacaaaa 137331
to top
>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0025D09
          Length = 142593

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  tcaatttcatccatacaaaa 134
            ||||||||||||||||||||
Sbjct: 6848 tcaatttcatccatacaaaa 6867
to top
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0462E11
          Length = 166115

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    tcaatttcatccatacaaaa 134
              ||||||||||||||||||||
Sbjct: 119129 tcaatttcatccatacaaaa 119148
to top
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0458D06
          Length = 166038

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   tcaatttcatccatacaaaa 134
             ||||||||||||||||||||
Sbjct: 24945 tcaatttcatccatacaaaa 24964
to top
>gb|AC005323.1|AC005323 Homo sapiens chromosome 17, clone hRPK.799_N_11, complete sequence
          Length = 204082

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    taatacatgcacccagcata 336
              ||||||||||||||||||||
Sbjct: 146974 taatacatgcacccagcata 146955
to top
>emb|CR376782.8| Zebrafish DNA sequence from clone CH211-235O4 in linkage group 25,
             complete sequence
          Length = 120282

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aacattaacaacagtaacaa 20
             ||||||||||||||||||||
Sbjct: 14098 aacattaacaacagtaacaa 14117
to top
>dbj|AP000756.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-720D4, complete
             sequence
          Length = 170977

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 141   gggtacaataaacatgggag 160
             ||||||||||||||||||||
Sbjct: 64504 gggtacaataaacatgggag 64523
to top
>gb|AC005209.1|AC005209 Homo sapiens chromosome 17, clone hRPK.628_O_18, complete sequence
          Length = 184130

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    caataaacatgggagatcat 165
              ||||||||||||||||||||
Sbjct: 119179 caataaacatgggagatcat 119160
to top
>gb|AC004384.1|AC004384 Human Chromosome X clone bWXD531, complete sequence
          Length = 164675

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   ttttctccttatttctcaag 206
             ||||||||||||||||||||
Sbjct: 13475 ttttctccttatttctcaag 13456
to top
>gb|AC004385.1|AC004385 Human Chromosome X clone bWXD547, complete sequence
          Length = 177311

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   ttttctccttatttctcaag 206
             ||||||||||||||||||||
Sbjct: 63802 ttttctccttatttctcaag 63821
to top
>gb|M97918.1|YSCSWI4A Saccharomyces cerevisiae SWI4 gene, promoter region
          Length = 1729

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   aacattaacaacagtaacaa 20
           ||||||||||||||||||||
Sbjct: 205 aacattaacaacagtaacaa 186
to top
>gb|AC154653.2| Mus musculus BAC clone RP24-262N5 from chromosome 16, complete sequence
          Length = 164851

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     gctcaacaaagacaagcaaa 101
              ||||||||||||||||||||
Sbjct: 137255 gctcaacaaagacaagcaaa 137274
to top
>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0498D08, complete sequence
          Length = 53801

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   tcaatttcatccatacaaaa 134
             ||||||||||||||||||||
Sbjct: 35307 tcaatttcatccatacaaaa 35326


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,173,021
Number of Sequences: 3902068
Number of extensions: 3173021
Number of successful extensions: 57801
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57616
Number of HSP's gapped (non-prelim): 185
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top