| Clone Name | rbaal21n11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463741.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1047 Score = 226 bits (114), Expect = 7e-56 Identities = 183/206 (88%) Strand = Plus / Minus Query: 266 cgcttgctcaaagtcaccagacattcccatggacagttcaaactgttctgtcggtatacc 325 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| | Sbjct: 402 cgcttgctcaaagtcaccagacattcccatggagagttcaaactgttctgccggcatatc 343 Query: 326 gagggccttgcaaacctcaagcttacagtttaccagtgccttaaaattctctggcgttga 385 | |||||| ||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| Sbjct: 342 aatggccttacaaacttcaagtttacaatttaccagtgccttaaaattttctggtgttga 283 Query: 386 ggagtaatctttcattcctattgtcatgagtcctgacagtattaagtttgggcaagctag 445 |||||| ||||||||||||||||||||||| ||||| | ||||| || |||||| |||| Sbjct: 282 ggagtagtctttcattcctattgtcatgagacctgaaaatattaggtgtgggcatgctaa 223 Query: 446 tttcacatgcttagcaagctccacgc 471 ||||||||||| |||||||| |||| Sbjct: 222 cttcacatgcttggcaagctcgacgc 197 Score = 145 bits (73), Expect = 2e-31 Identities = 124/141 (87%) Strand = Plus / Minus Query: 481 ttttgattcttctccactagtgtttacttgcaccataacttttaaaggctccctgcccaa 540 |||||||||||||||||||||||||||||| |||| |||||| ||||| ||||| ||||| Sbjct: 174 ttttgattcttctccactagtgtttacttgtaccaaaactttcaaaggatcccttcccaa 115 Query: 541 gctaacgacagcacgatcgagatgattggcaatcttttcattaccaacaccctcaaccat 600 |||| ||||||||||| || || || ||||||||| ||||| | |||||||||||||| Sbjct: 114 gctactaacagcacgatcaaggtggttagcaatctttacattatctacaccctcaaccat 55 Query: 601 gtcaagatttggaacggcagc 621 || |||||||||||| ||||| Sbjct: 54 gtgaagatttggaacagcagc 34
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 121 bits (61), Expect = 3e-24 Identities = 91/101 (90%) Strand = Plus / Plus Query: 266 cgcttgctcaaagtcaccagacattcccatggacagttcaaactgttctgtcggtatacc 325 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| | Sbjct: 41860076 cgcttgctcaaagtcaccagacattcccatggagagttcaaactgttctgccggcatatc 41860135 Query: 326 gagggccttgcaaacctcaagcttacagtttaccagtgcct 366 | |||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 41860136 aatggccttacaaacttcaagtttacaatttaccagtgcct 41860176 Score = 111 bits (56), Expect = 3e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 364 ccttaaaattctctggcgttgaggagtaatctttcattcctattgtcatgagtcctgaca 423 |||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| | Sbjct: 41860250 ccttaaaattttctggtgttgaggagtagtctttcattcctattgtcatgagacctgaaa 41860309 Query: 424 gtattaagtttgggcaagctagtttcacatgcttagcaagctccacgc 471 ||||| || |||||| |||| ||||||||||| |||||||| |||| Sbjct: 41860310 atattaggtgtgggcatgctaacttcacatgcttggcaagctcgacgc 41860357 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 486 attcttctccactagtgtttacttgcaccataacttttaaaggctccctgcccaagctaa 545 ||||||||||||||||||||||||| |||| |||||| ||||| ||||| ||||||||| Sbjct: 41860645 attcttctccactagtgtttacttgtaccaaaactttcaaaggatcccttcccaagctac 41860704 Query: 546 cgacagcacgatcgagatgattggcaatct 575 ||||||||||| || || || ||||||| Sbjct: 41860705 taacagcacgatcaaggtggttagcaatct 41860734 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 194 cttttggttcggatactcccttggtccgaatattgttgacccaaccctcacatttgtgct 253 ||||| ||| ||||||||||||||||| || || |||||||||| ||||||| ||||||| Sbjct: 41859866 ctttttgtttggatactcccttggtccaaaaatagttgacccaatcctcacacttgtgct 41859925 Query: 254 gccca 258 |||| Sbjct: 41859926 accca 41859930 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 574 cttttcattaccaacaccctcaaccatgtcaagatttggaacggcagct 622 |||| ||||| | |||||||||||||||| |||||||||||| |||||| Sbjct: 41860913 ctttacattatctacaccctcaaccatgtgaagatttggaacagcagct 41860961
>dbj|AP003735.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1147A04 Length = 150053 Score = 121 bits (61), Expect = 3e-24 Identities = 91/101 (90%) Strand = Plus / Plus Query: 266 cgcttgctcaaagtcaccagacattcccatggacagttcaaactgttctgtcggtatacc 325 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| | Sbjct: 103452 cgcttgctcaaagtcaccagacattcccatggagagttcaaactgttctgccggcatatc 103511 Query: 326 gagggccttgcaaacctcaagcttacagtttaccagtgcct 366 | |||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 103512 aatggccttacaaacttcaagtttacaatttaccagtgcct 103552 Score = 111 bits (56), Expect = 3e-21 Identities = 95/108 (87%) Strand = Plus / Plus Query: 364 ccttaaaattctctggcgttgaggagtaatctttcattcctattgtcatgagtcctgaca 423 |||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| | Sbjct: 103626 ccttaaaattttctggtgttgaggagtagtctttcattcctattgtcatgagacctgaaa 103685 Query: 424 gtattaagtttgggcaagctagtttcacatgcttagcaagctccacgc 471 ||||| || |||||| |||| ||||||||||| |||||||| |||| Sbjct: 103686 atattaggtgtgggcatgctaacttcacatgcttggcaagctcgacgc 103733 Score = 83.8 bits (42), Expect = 6e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 486 attcttctccactagtgtttacttgcaccataacttttaaaggctccctgcccaagctaa 545 ||||||||||||||||||||||||| |||| |||||| ||||| ||||| ||||||||| Sbjct: 104021 attcttctccactagtgtttacttgtaccaaaactttcaaaggatcccttcccaagctac 104080 Query: 546 cgacagcacgatcgagatgattggcaatct 575 ||||||||||| || || || ||||||| Sbjct: 104081 taacagcacgatcaaggtggttagcaatct 104110 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/65 (87%) Strand = Plus / Plus Query: 194 cttttggttcggatactcccttggtccgaatattgttgacccaaccctcacatttgtgct 253 ||||| ||| ||||||||||||||||| || || |||||||||| ||||||| ||||||| Sbjct: 103242 ctttttgtttggatactcccttggtccaaaaatagttgacccaatcctcacacttgtgct 103301 Query: 254 gccca 258 |||| Sbjct: 103302 accca 103306 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 574 cttttcattaccaacaccctcaaccatgtcaagatttggaacggcagct 622 |||| ||||| | |||||||||||||||| |||||||||||| |||||| Sbjct: 104289 ctttacattatctacaccctcaaccatgtgaagatttggaacagcagct 104337
>ref|NM_118820.2| Arabidopsis thaliana pyridoxal phosphate binding AT4G26860 mRNA, complete cds Length = 997 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 207 tactcccttggtccgaatattgttgacccaaccctcacatttgtgctgcccagttctatc 266 ||||| ||||||||||| || || || |||||||||||||| ||||| |||| || ||| Sbjct: 773 tactctcttggtccgaaaatggtggaaccaaccctcacattggtgcttcccatctcaatc 714 Query: 267 gcttgctcaaagtcaccagacattcccatggacagttcaaa 307 ||| |||| |||||||||||||| ||||||||||||||||| Sbjct: 713 gctagctcgaagtcaccagacatgcccatggacagttcaaa 673
>gb|AF375405.1| Arabidopsis thaliana AT4g26860/F10M23_200 mRNA, complete cds Length = 922 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 207 tactcccttggtccgaatattgttgacccaaccctcacatttgtgctgcccagttctatc 266 ||||| ||||||||||| || || || |||||||||||||| ||||| |||| || ||| Sbjct: 748 tactctcttggtccgaaaatggtggaaccaaccctcacattggtgcttcccatctcaatc 689 Query: 267 gcttgctcaaagtcaccagacattcccatggacagttcaaa 307 ||| |||| |||||||||||||| ||||||||||||||||| Sbjct: 688 gctagctcgaagtcaccagacatgcccatggacagttcaaa 648
>gb|AY066052.1| Arabidopsis thaliana AT4g26860/F10M23_200 mRNA, complete cds Length = 735 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 207 tactcccttggtccgaatattgttgacccaaccctcacatttgtgctgcccagttctatc 266 ||||| ||||||||||| || || || |||||||||||||| ||||| |||| || ||| Sbjct: 716 tactctcttggtccgaaaatggtggaaccaaccctcacattggtgcttcccatctcaatc 657 Query: 267 gcttgctcaaagtcaccagacattcccatggacagttcaaa 307 ||| |||| |||||||||||||| ||||||||||||||||| Sbjct: 656 gctagctcgaagtcaccagacatgcccatggacagttcaaa 616
>emb|BX829131.1|CNS0A3E9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL74ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 938 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 207 tactcccttggtccgaatattgttgacccaaccctcacatttgtgctgcccagttctatc 266 ||||| ||||||||||| || || || |||||||||||||| ||||| |||| || ||| Sbjct: 833 tactctcttggtccgaaaatggtggaaccaaccctcacattggtgcttcccatctcaatc 774 Query: 267 gcttgctcaaagtcaccagacattcccatggacagttcaaa 307 ||| |||| |||||||||||||| ||||||||||||||||| Sbjct: 773 gctagctcgaagtcaccagacatgcccatggacagttcaaa 733
>gb|AY084753.1| Arabidopsis thaliana clone 11679 mRNA, complete sequence Length = 940 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 207 tactcccttggtccgaatattgttgacccaaccctcacatttgtgctgcccagttctatc 266 ||||| ||||||||||| || || || |||||||||||||| ||||| |||| || ||| Sbjct: 774 tactctcttggtccgaaaatggtggaaccaaccctcacattggtgcttcccatctcaatc 715 Query: 267 gcttgctcaaagtcaccagacattcccatggacagttcaaa 307 ||| |||| |||||||||||||| ||||||||||||||||| Sbjct: 714 gctagctcgaagtcaccagacatgcccatggacagttcaaa 674
>gb|BT013081.1| Lycopersicon esculentum clone 114338F, mRNA sequence Length = 1202 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Minus Query: 204 ggatactcccttggtccgaatattgttgacccaaccctcacatttgtgctgcccagttct 263 ||||||||||| ||||| ||||| ||||| |||| |||||||| |||||||||| |||| Sbjct: 764 ggatactccctaggtccaaatatggttgatccaattctcacattggtgctgcccatttct 705 Query: 264 atcgcttgctcaaagtcaccagacattcccatggaca 300 |||||| |||| ||||||| |||||| ||||| |||| Sbjct: 704 atcgctagctcgaagtcactagacatgcccattgaca 668
>ref|NM_179318.1| Arabidopsis thaliana pyridoxal phosphate binding AT1G11930 transcript variant AT1G11930.2 mRNA, complete cds Length = 1057 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 240 ctcacatttgtgctgcccagttctatcgcttgctcaaagtcaccagacattcccat 295 |||||||||||||| |||||||| || ||| | ||||||||||||||||| ||||| Sbjct: 770 ctcacatttgtgcttcccagttcaattgctagttcaaagtcaccagacatccccat 715
>emb|BX815330.1|CNS0ABBG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS52ZE03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1262 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 240 ctcacatttgtgctgcccagttctatcgcttgctcaaagtcaccagacattcccat 295 |||||||||||||| |||||||| || ||| | ||||||||||||||||| ||||| Sbjct: 1136 ctcacatttgtgcttcccagttcaattgctagttcaaagtcaccagacatccccat 1081
>emb|AJ441305.1|OSA441305 Oryza sativa partial mRNA for putative proline synthetase associated protein Length = 660 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 358 ccagtgccttaaaattctctggcgttgaggagtaatctttcattcctattgtcat 412 |||||||||| ||||||||||| |||||||||||||| ||| ||||||||||| Sbjct: 553 ccagtgccttgaaattctctggagttgaggagtaatcaagcatccctattgtcat 499 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 564 gattggcaatcttttcattaccaacaccctcaaccatgtcaagatttgg 612 ||||||||||||| | || | |||||| ||| ||||||||||||||||| Sbjct: 334 gattggcaatcttctgatcatcaacactctcgaccatgtcaagatttgg 286
>gb|AY109697.1| Zea mays CL14781_1 mRNA sequence Length = 769 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 222 aatattgttgacccaaccctcacatttgtgctgcccagttctatcgcttgctcaaagtca 281 ||||| ||||||||||| || ||||||||||| |||| ||| |||||||| ||||| ||| Sbjct: 253 aatatggttgacccaactcttacatttgtgcttcccatttcaatcgcttgttcaaaatca 312 Query: 282 ccagacattcccatggaca 300 | ||||| ||||| |||| Sbjct: 313 gccgacatgcccatagaca 331 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 485 gattcttctccactagtgtttacttgcacca 515 |||||||||||||||||||| ||||| |||| Sbjct: 529 gattcttctccactagtgttgacttggacca 559
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 266 cgcttgctcaaagtcaccagacattcccatggacagttcaaa 307 |||| |||| |||||||||||||| ||||||||||||||||| Sbjct: 7356 cgctagctcgaagtcaccagacatgcccatggacagttcaaa 7397 Score = 48.1 bits (24), Expect = 0.035 Identities = 45/52 (86%) Strand = Plus / Plus Query: 207 tactcccttggtccgaatattgttgacccaaccctcacatttgtgctgccca 258 ||||| ||||||||||| || || || |||||||||||||| ||||| |||| Sbjct: 7165 tactctcttggtccgaaaatggtggaaccaaccctcacattggtgcttccca 7216
>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project) Length = 128574 Score = 60.0 bits (30), Expect = 9e-06 Identities = 39/42 (92%) Strand = Plus / Plus Query: 266 cgcttgctcaaagtcaccagacattcccatggacagttcaaa 307 |||| |||| |||||||||||||| ||||||||||||||||| Sbjct: 51513 cgctagctcgaagtcaccagacatgcccatggacagttcaaa 51554 Score = 48.1 bits (24), Expect = 0.035 Identities = 45/52 (86%) Strand = Plus / Plus Query: 207 tactcccttggtccgaatattgttgacccaaccctcacatttgtgctgccca 258 ||||| ||||||||||| || || || |||||||||||||| ||||| |||| Sbjct: 51322 tactctcttggtccgaaaatggtggaaccaaccctcacattggtgcttccca 51373
>gb|AC105772.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1504_G04, complete sequence Length = 88812 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 364 ccttaaaattctctggcgttgaggagtaatctttcattcctattgtcat 412 |||| ||||||||||| |||||||||||||| ||| ||||||||||| Sbjct: 81101 ccttgaaattctctggagttgaggagtaatcaagcatccctattgtcat 81149 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 266 cgcttgctcaaagtcaccagacattcccatggacagttcaaactg 310 |||||||||||| ||| ||||||| ||||| ||||||||| |||| Sbjct: 80920 cgcttgctcaaaatcagcagacatgcccatagacagttcacactg 80964 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 585 caacaccctcaaccatgtcaagatttgg 612 |||||| ||| ||||||||||||||||| Sbjct: 81956 caacactctcgaccatgtcaagatttgg 81983
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence Length = 140234 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Minus Query: 266 cgcttgctcaaagtcaccagacattcccatggacagttcaaactg 310 |||||||||||| ||| ||||||| ||||| ||||||||| |||| Sbjct: 64978 cgcttgctcaaaatcagcagacatgcccatagacagttcacactg 64934 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 364 ccttaaaattctctggcgttgaggagtaatctttcattcctattgtcat 412 |||| ||||||||||| |||||||||||||| ||| ||||||||||| Sbjct: 64797 ccttgaaattctctggagttgaggagtaatcaagcatccctattgtcat 64749 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 585 caacaccctcaaccatgtcaagatttgg 612 |||||| ||| ||||||||||||||||| Sbjct: 63943 caacactctcgaccatgtcaagatttgg 63916
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 364 ccttaaaattctctggcgttgaggagtaatctttcattcctattgtcat 412 |||| ||||||||||| |||||||||||||| ||| ||||||||||| Sbjct: 2802775 ccttgaaattctctggagttgaggagtaatcaagcatccctattgtcat 2802823 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Plus Query: 266 cgcttgctcaaagtcaccagacattcccatggacagttcaaactg 310 |||||||||||| ||| ||||||| ||||| ||||||||| |||| Sbjct: 2802594 cgcttgctcaaaatcagcagacatgcccatagacagttcacactg 2802638 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 585 caacaccctcaaccatgtcaagatttgg 612 |||||| ||| ||||||||||||||||| Sbjct: 2803630 caacactctcgaccatgtcaagatttgg 2803657
>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome Length = 1913428 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 106 tgtacatttcttttgagacaacat 129 |||||||||||||||||||||||| Sbjct: 460656 tgtacatttcttttgagacaacat 460633
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome Length = 1830138 Score = 48.1 bits (24), Expect = 0.035 Identities = 24/24 (100%) Strand = Plus / Minus Query: 106 tgtacatttcttttgagacaacat 129 |||||||||||||||||||||||| Sbjct: 392878 tgtacatttcttttgagacaacat 392855
>ref|XM_424381.1| PREDICTED: Gallus gallus similar to Proline synthetase co-transcribed bacterial homolog protein (LOC426770), mRNA Length = 1277 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 488 tcttctccactagtgtttacttgcaccataacttt 522 ||||||||||| ||||| ||||||||||| ||||| Sbjct: 494 tcttctccactggtgttaacttgcaccatgacttt 460
>emb|CR406788.1| Gallus gallus finished cDNA, clone ChEST871g12 Length = 1078 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 488 tcttctccactagtgtttacttgcaccataacttt 522 ||||||||||| ||||| ||||||||||| ||||| Sbjct: 599 tcttctccactggtgttaacttgcaccatgacttt 565
>emb|BX931594.2| Gallus gallus finished cDNA, clone ChEST614m19 Length = 1244 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 488 tcttctccactagtgtttacttgcaccataacttt 522 ||||||||||| ||||| ||||||||||| ||||| Sbjct: 460 tcttctccactggtgttaacttgcaccatgacttt 426
>emb|BX934561.1| Gallus gallus finished cDNA, clone ChEST87c19 Length = 1223 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 488 tcttctccactagtgtttacttgcaccataacttt 522 ||||||||||| ||||| ||||||||||| ||||| Sbjct: 440 tcttctccactggtgttaacttgcaccatgacttt 406
>gb|AC096775.5| Homo sapiens BAC clone RP11-350C21 from 7, complete sequence Length = 99452 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 tatttacatgtacatttacatg 90 |||||||||||||||||||||| Sbjct: 66616 tatttacatgtacatttacatg 66637
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 581 ttaccaacaccctcaaccatgtcaa 605 ||||||||||||||||| ||||||| Sbjct: 1317657 ttaccaacaccctcaactatgtcaa 1317633
>ref|XM_571414.1| Cryptococcus neoformans var. neoformans JEC21 clathrin-coated vesicle protein (CNF04530) partial mRNA Length = 6323 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 581 ttaccaacaccctcaaccatgtcaa 605 ||||||||||||||||| ||||||| Sbjct: 2147 ttaccaacaccctcaactatgtcaa 2171
>gb|AC140026.11| Medicago truncatula clone mth2-36j24, complete sequence Length = 162172 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 tttcttttgagacaacataca 132 ||||||||||||||||||||| Sbjct: 87649 tttcttttgagacaacataca 87629
>emb|AL441883.11| Human DNA sequence from clone RP1-223E5 on chromosome 6 Contains the SIRT5 gene for sirtuin silent mating type information regulation 2 homolog 5 (S. cerevisiae), the gene for retinoic acid repressible protein (RARG-1), the 3' end of the RANBP9 gene for RAN binding protein 9 (RanBPM) and two CpG islands, complete sequence Length = 63952 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 576 tttcattaccaacaccctcaa 596 ||||||||||||||||||||| Sbjct: 48803 tttcattaccaacaccctcaa 48783
>gb|AC109633.5| Homo sapiens chromosome 8, clone CTD-2024D23, complete sequence Length = 134242 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 59 aaacatcagatatttacatgt 79 ||||||||||||||||||||| Sbjct: 108747 aaacatcagatatttacatgt 108727
>gb|AC104998.4| Homo sapiens chromosome 8, clone CTC-830C11, complete sequence Length = 129469 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 aaacatcagatatttacatgt 79 ||||||||||||||||||||| Sbjct: 87148 aaacatcagatatttacatgt 87168
>gb|AC109818.5| Homo sapiens BAC clone RP11-293F1 from 4, complete sequence Length = 40149 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 agatatttacatgtacatttacatg 90 ||||||||||||||| ||||||||| Sbjct: 15765 agatatttacatgtaaatttacatg 15741
>gb|AC133961.3| Homo sapiens BAC clone RP13-494C23 from 4, complete sequence Length = 177787 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 tatttacatgtacatttacat 89 ||||||||||||||||||||| Sbjct: 10285 tatttacatgtacatttacat 10265
>emb|BX004792.8| Zebrafish DNA sequence from clone DKEY-1J19, complete sequence Length = 206371 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 65 cagatatttacatgtacatttacat 89 ||||||||||||| ||||||||||| Sbjct: 62486 cagatatttacatttacatttacat 62462
>dbj|BS000050.1| Pan troglodytes chromosome 22 clone:RP43-038C12, map 22, complete sequences Length = 202014 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 atatttacatgtacatttaca 88 ||||||||||||||||||||| Sbjct: 30114 atatttacatgtacatttaca 30094
>emb|Z50029.1|CEZC504 Caenorhabditis elegans Cosmid ZC504, complete sequence Length = 37750 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 aaaagttttgattcttctcca 496 ||||||||||||||||||||| Sbjct: 19615 aaaagttttgattcttctcca 19595
>dbj|AP001675.1| Homo sapiens genomic DNA, chromosome 21q, section 19/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 atatttacatgtacatttaca 88 ||||||||||||||||||||| Sbjct: 156737 atatttacatgtacatttaca 156717
>emb|AL772293.7| Mouse DNA sequence from clone RP23-57D24 on chromosome 4, complete sequence Length = 251930 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 ctaaacatcagatatttacat 77 ||||||||||||||||||||| Sbjct: 155597 ctaaacatcagatatttacat 155577
>dbj|AP000433.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B67B5, LL56-APP region, complete sequence Length = 57399 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 atatttacatgtacatttaca 88 ||||||||||||||||||||| Sbjct: 43794 atatttacatgtacatttaca 43774
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 546 cgacagcacgatcgagatga 565 |||||||||||||||||||| Sbjct: 1446812 cgacagcacgatcgagatga 1446831
>ref|XM_742541.1| Aspergillus fumigatus Af293 glucose inhibited division protein A (Afu6g04440) partial mRNA Length = 2082 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 ggttcggatactcccttggt 218 |||||||||||||||||||| Sbjct: 1400 ggttcggatactcccttggt 1381
>gb|AC123852.4| Mus musculus BAC clone RP23-326G23 from chromosome 6, complete sequence Length = 195925 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 tttatggaaatctatgtttctaaa 61 ||||||||||| |||||||||||| Sbjct: 172667 tttatggaaatttatgtttctaaa 172644
>gb|AC122839.4| Mus musculus BAC clone RP23-193K9 from 8, complete sequence Length = 177322 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gtctcctttatggaaatcta 51 |||||||||||||||||||| Sbjct: 64772 gtctcctttatggaaatcta 64753
>gb|AC116110.7| Mus musculus chromosome 6, clone RP23-19B12, complete sequence Length = 182667 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 ctttaattctgcttttggtt 202 |||||||||||||||||||| Sbjct: 138573 ctttaattctgcttttggtt 138554
>emb|BX511168.4| Zebrafish DNA sequence from clone DKEY-22F5 in linkage group 21, complete sequence Length = 263757 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 atttacatgtacatttacat 89 |||||||||||||||||||| Sbjct: 219188 atttacatgtacatttacat 219207
>gb|AC091699.6| Homo sapiens chromosome 10 clone RP11-296D9, complete sequence Length = 196856 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 caaccctcacatttgtgctg 254 |||||||||||||||||||| Sbjct: 155240 caaccctcacatttgtgctg 155259
>gb|AC022026.7| Homo sapiens chromosome 10 clone RP11-506B4, complete sequence Length = 170834 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 caaccctcacatttgtgctg 254 |||||||||||||||||||| Sbjct: 39404 caaccctcacatttgtgctg 39423
>gb|AC121223.5| Rattus norvegicus BAC CH230-70M4 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 263147 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 110 catttcttttgagacaacatacaatgta 137 ||||||||||||||||| || ||||||| Sbjct: 111414 catttcttttgagacaagattcaatgta 111387
>gb|AC102703.16| Mus musculus chromosome 1, clone RP24-442E5, complete sequence Length = 197439 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ttctaaacatcagatattta 74 |||||||||||||||||||| Sbjct: 17586 ttctaaacatcagatattta 17567
>gb|AC106728.6| Homo sapiens 3 BAC RP11-319J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 193623 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tatttacatgtacatttaca 88 |||||||||||||||||||| Sbjct: 14526 tatttacatgtacatttaca 14507
>gb|AC123767.2| Homo sapiens chromosome 8, clone RP11-122L4, complete sequence Length = 154078 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 59 aaacatcagatatttacatgtacattta 86 ||||| |||||||||||||||| ||||| Sbjct: 124371 aaacaccagatatttacatgtatattta 124398
>emb|BX004983.8| Zebrafish DNA sequence from clone DKEY-7F3, complete sequence Length = 234489 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 atttacatgtacatttacat 89 |||||||||||||||||||| Sbjct: 164192 atttacatgtacatttacat 164211
>gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, complete sequence Length = 144031 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 atttacatgtacatttacat 89 |||||||||||||||||||| Sbjct: 64865 atttacatgtacatttacat 64846
>emb|BX000467.10| Zebrafish DNA sequence from clone CH211-1K7 in linkage group 19, complete sequence Length = 120440 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 agatatttacatgtacatttacat 89 |||||||||||| ||||||||||| Sbjct: 62241 agatatttacatttacatttacat 62264
>dbj|AP000758.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775A2, complete sequence Length = 163025 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 tgtttctaaacatcagatat 71 |||||||||||||||||||| Sbjct: 87201 tgtttctaaacatcagatat 87220
>gb|AC110118.8| Rattus norvegicus BAC CH230-310N6 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 175663 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 110 catttcttttgagacaacatacaatgta 137 ||||||||||||||||| || ||||||| Sbjct: 22594 catttcttttgagacaagattcaatgta 22567
>gb|AC153990.2| Mus musculus 6 BAC RP24-293L1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172768 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 ctttaattctgcttttggtt 202 |||||||||||||||||||| Sbjct: 166886 ctttaattctgcttttggtt 166905
>emb|AL672259.9| Mouse DNA sequence from clone RP23-169M4 on chromosome 2, complete sequence Length = 179832 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 tttacatgtacatttacatgccat 94 ||||||||||||||| |||||||| Sbjct: 130851 tttacatgtacatttgcatgccat 130828
>gb|AC163389.2| Mus musculus chromosome 1, clone RP23-397E23, complete sequence Length = 203933 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ttctaaacatcagatattta 74 |||||||||||||||||||| Sbjct: 149108 ttctaaacatcagatattta 149089 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,831,512 Number of Sequences: 3902068 Number of extensions: 5831512 Number of successful extensions: 124554 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124341 Number of HSP's gapped (non-prelim): 213 length of query: 622 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 599 effective length of database: 17,143,297,704 effective search space: 10268835324696 effective search space used: 10268835324696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)