ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC ... 78 2e-14
2YAE9_YEAST (P39721) Protein YAL049C 65 1e-10
3YB4E_SCHPO (O14359) Hypothetical protein C30D10.14 in chromosome II 51 3e-06
4RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem... 32 1.7
5NXF1_DROME (Q9U1H9) Nuclear RNA export factor 1 (Protein tip-ass... 31 2.2
6DLHH_METEX (P71505) Putative carboxymethylenebutenolidase precur... 31 2.9
7Y2373_BACSK (Q5WFF2) UPF0348 protein ABC2373 30 6.4
8METX_MOOTA (Q2RIW8) Homoserine O-acetyltransferase (EC 2.3.1.31)... 30 6.4

>E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-)|
          Length = 303

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 36/76 (47%), Positives = 50/76 (65%)
 Frame = -2

Query: 571 LKEQGASSVGAAGYCWGAKVVAELAKANEIQTAVMSHPSFVTVDDIKEVKCPIAVLGAET 392
           LK++G  SV   GYCWG K+  E+ K ++++   +SHP  VT DD+KEVK PI +LGA+ 
Sbjct: 139 LKKEG-KSVAVGGYCWGGKLSVEVGKTSDVKAVCLSHPYSVTADDMKEVKWPIEILGAQN 197

Query: 391 DVMSPPELVKEFEQVL 344
           D  +PP+ V  F  VL
Sbjct: 198 DTTTPPKEVYRFVHVL 213



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>YAE9_YEAST (P39721) Protein YAL049C|
          Length = 246

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
 Frame = -2

Query: 547 VGAAGYCWGAKVVAELAKANE--IQTAVMSHPSFVTVDDIKEV--KCPIAVLGAETDVMS 380
           +G  GYC+GAK   +    +      A ++HPSFV++++I+ +  K PI +  AE D + 
Sbjct: 124 IGVVGYCFGAKFAVQHISGDGGLANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIF 183

Query: 379 PPELVKEFEQVLSSNSGIAHFVKIFPGVSHGWTVRYNGEDAAAVKSAEEALTDMIDWFN 203
           P  L    E+ L  N    + + +F GV+HG+  R +    A   + E+ L D I WFN
Sbjct: 184 PANLRHLTEEKLKDNHA-TYQLDLFSGVAHGFAARGDISIPAVKYAKEKVLLDQIYWFN 241



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>YB4E_SCHPO (O14359) Hypothetical protein C30D10.14 in chromosome II|
          Length = 249

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
 Frame = -2

Query: 550 SVGAAGYCWGAKVVAELAKANEIQTAVMSHPSFVTVDDIKEVKCPIAVLGAETDVMSPPE 371
           ++G  G+CWGAKV+       +       HPSF    D   V CP+  L ++ +     +
Sbjct: 132 TIGTYGFCWGAKVLVTYPATIDFVGIASCHPSFPDSADAANVHCPVLFLCSKDE---DAK 188

Query: 370 LVKEFEQVLSSNSGIA-HFVKIFPGVSHGW 284
           ++KE+E+   +N   A    + F  + HGW
Sbjct: 189 IIKEWEEAFKTNPAYAKSSFETFSDMFHGW 218



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>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element jockey (EC|
           2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -2

Query: 460 PSFVTVDDIKEVKCPIAVLGAETDVMSPPELVKEFEQVLSSNSGIAHFVKIFPGVSHGWT 281
           P+   V ++ E    IA    +T V++      + + +L++ SG+  ++  F   +  W 
Sbjct: 661 PTHTPVTEVDEEDVLIATYADDTAVLT------KSKSILAATSGLQEYLDAFQQWAENWN 714

Query: 280 VRYNGEDAAAVKSA 239
           VR N E  A V  A
Sbjct: 715 VRINAEKCANVTFA 728



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>NXF1_DROME (Q9U1H9) Nuclear RNA export factor 1 (Protein tip-associating)|
           (Protein small bristles) (DmNXF1)
          Length = 672

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = -2

Query: 517 KVVAELAKANEIQTAVMSHPSFVTVDDIKEVKCPI---AVLGAETDVM--SPPELVKEFE 353
           K+   +AK   IQT  +    F    D+K+V CP+    V+GA  D+M  + P+L     
Sbjct: 202 KMKVTMAKRYNIQTKALDLSRFHADPDLKQVFCPLFRQNVMGAAIDIMCDNIPDL----- 256

Query: 352 QVLSSNSGIAHFVKIFPGV 296
           + L+ N      ++ F GV
Sbjct: 257 EALNLNDNSISSMEAFKGV 275



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>DLHH_METEX (P71505) Putative carboxymethylenebutenolidase precursor (EC|
           3.1.1.45) (Dienelactone hydrolase) (DLH)
          Length = 291

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
 Frame = -2

Query: 547 VGAAGYCWGAKVVAELAKAN-EIQTAVMSHPSFV----------TVDDIKEVKCPIAVLG 401
           +G  G+CWG ++    A  N  ++  V  +   V           VD   ++K P+  L 
Sbjct: 164 LGITGFCWGGRITWLYAAHNPAVKAGVAWYGRLVGDSSALMPKNPVDVAADLKAPVLGLY 223

Query: 400 AETDVMSPPELVKEFEQVLSSNSGIAHFVKIFPGVSHGWTVRYNGEDAAAVKSAEEALTD 221
              D   P   +   ++   +      FV ++P   H +   Y     A  + A++    
Sbjct: 224 GGADQGIPVATIDRMKEACRAAGKTCDFV-VYPEAGHAFHADYRPSYRA--EPAQDGWKR 280

Query: 220 MIDWFNK 200
           + DWF +
Sbjct: 281 LQDWFRQ 287



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>Y2373_BACSK (Q5WFF2) UPF0348 protein ABC2373|
          Length = 405

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -2

Query: 523 GAKVVAELAKANEIQTAVMSHPSFVTVDDIKEVKCPIAVLGAETDVMSPPELVKEF--EQ 350
           GA +V EL  A  +QTA       VT+  +  ++C +   G+E   ++P   + EF  + 
Sbjct: 63  GADLVVELPYAYSVQTAERFAEGAVTI--LAALRCSVLNFGSEKGEIAPFYALAEFMNDH 120

Query: 349 VLSSNSGIAHFVKIFPGVSH 290
            ++ N  +  F+K   GVS+
Sbjct: 121 QVAFNHHVKQFLK--DGVSY 138



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>METX_MOOTA (Q2RIW8) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 374

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 433 KEVKCPIAVLGAETDVMSPPELVKEFEQVLSSNSGIAHFVKIFPGVSH 290
           ++  CP   +G  +D + PP  V+E  ++++   G A + +I     H
Sbjct: 300 RDFPCPCLGIGISSDFLFPPYQVQEIVRMINDGGGHARYAEIDSPYGH 347


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,421,525
Number of Sequences: 219361
Number of extensions: 1561898
Number of successful extensions: 4448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4445
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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