>NALP4_HUMAN (Q96MN2) NACHT-, LRR- and PYD-containing protein 4|
           (PYRIN-containing APAF1-like protein 4) (PAAD and
           NACHT-containing protein 2) (PYRIN and NACHT-containing
           protein 2) (Ribonuclease inhibitor 2)
          Length = 994

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 55  SYVHIHIVHLDVCRSFYFLGKGHYVHPHLAL 147
           SYV +H+   + C + ++L K H  HPH A+
Sbjct: 447 SYVFLHVCIQEFCAALFYLLKSHLDHPHPAV 477

>GT2D1_HUMAN (Q9UHL9) General transcription factor II-I repeat domain-containing|
           protein 1 (GTF2I repeat domain-containing protein 1)
           (Muscle TFII-I repeat domain-containing protein 1)
           (General transcription factor III) (Slow-muscle-fiber
           enhancer binding
          Length = 959

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -3

Query: 522 HDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPT 343
           +DA  SR+ +A T  E+    F+ K  +A+ I +  +VP    KRI  N G  +I+  P 
Sbjct: 692 YDARLSRIDIANTLREQVQDLFNKKYGEALGIKYPVQVPY---KRIKSNPGSVIIEGLPP 748

Query: 342 G 340
           G
Sbjct: 749 G 749

>ION3_CARAU (P18520) Intermediate filament protein ON3|
          Length = 520

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = -3

Query: 531 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 358
           + + +AY + L   L   GN++  +  DL     +   F+ K   ++NKR    N   +I
Sbjct: 155 DAMFEAYINNLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENDFVLI 214

Query: 357 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 256
           +     +Y+N  +++ A+L+   D+  F  Q F+
Sbjct: 215 KKDVDEAYMNKVELE-AKLESLSDEINFLRQIFE 247

>K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4)|
           (Keratin-4) (K4)
          Length = 534

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = -3

Query: 531 EMVHDAYYS--RLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 358
           E + + Y S  R  L   GN++  +  +LK        F+ K   ++NKR A  N   V+
Sbjct: 199 EPLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVEDFKTKYEEEINKRTAAENDFVVL 258

Query: 357 QPKPTGSYVNSDQIQYARLDKPGDQ 283
           +     +Y+N  +++ A++D   D+
Sbjct: 259 KKDVDAAYLNKVELE-AKVDSLNDE 282

>K2C8_BRARE (Q6NWF6) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)|
           (Keratin-8) (K8)
          Length = 520

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = -3

Query: 531 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 358
           + + +AY + L   L   GN++  +  DL     +   F+ K   ++NKR    N   +I
Sbjct: 161 DAMFEAYIANLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENEFVLI 220

Query: 357 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 256
           +     +Y+N  +++ A+L+   D+  F  Q F+
Sbjct: 221 KKDVDEAYMNKVELE-AKLESLTDEINFLRQIFE 253

>WDR67_HUMAN (Q96DN5) WD-repeat protein 67|
          Length = 1066

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +1

Query: 112 GKGHYVHPHLALLYRVLFVCPEHEKAISVL--SSIFITFLNSSNKHAAHQIKLLGFKARL 285
           G G Y   +   ++R L   PE+  A S L      + FLN   K+     KLL    R 
Sbjct: 421 GYGEYPTKYRMFIWRSLLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRT 480

Query: 286 VAGLVQSRVL 315
           ++ L    V+
Sbjct: 481 LSALAHWSVI 490

>UVRC_GEOSL (Q747I7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 613

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 243 MLVAAVEERYKDAAQYRD 190
           M  AA +ERY+DAA+YRD
Sbjct: 211 MAAAAADERYEDAARYRD 228

>K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)|
           (Keratin-3) (K3) (65 kDa cytokeratin)
          Length = 629

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 22/85 (25%), Positives = 39/85 (45%)
 Frame = -3

Query: 510 YSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYV 331
           Y R YL     E   +  +LK  + +   F+ K   ++NKR A  N    ++     +Y+
Sbjct: 257 YLRSYLDNILGERGRLDSELKNMEDLVEDFKKKYEDEINKRTAAENEFVTLKKDVDSAYM 316

Query: 330 NSDQIQYARLDKPGDQPCFEAQEFD 256
           N  ++Q A++D   D+  F    +D
Sbjct: 317 NKVELQ-AKVDALIDEIDFLRTLYD 340

>K2C3_RABIT (Q29426) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)|
           (Keratin-3) (K3)
          Length = 629

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 21/85 (24%), Positives = 38/85 (44%)
 Frame = -3

Query: 510 YSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYV 331
           Y R YL     E   +  +L+    +   F+ K   ++NKR A  N    ++     +Y+
Sbjct: 242 YLRSYLDSIVGERGRLDSELRSMQDLVEDFKKKYEDEINKRTAAENEFVTLKKDVDAAYM 301

Query: 330 NSDQIQYARLDKPGDQPCFEAQEFD 256
           N  ++Q A++D   D+  F    +D
Sbjct: 302 NKVELQ-AKVDSLMDEINFLRTLYD 325


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,498,109
Number of Sequences: 219361
Number of extensions: 1520306
Number of successful extensions: 4417
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4417
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)