Clone Name	rbaal7f12
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	1051	0.0
2	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	704	0.0
3	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	609	e-171
4	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	581	e-162
5	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	513	e-142
6	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	513	e-142
7	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	472	e-130
8	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	404	e-109
9	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	222	1e-54
10	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	222	1e-54
11	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
12	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
13	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	8e-28
14	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	8e-28
15	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
16	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
17	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
18	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	8e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	8e-28
20	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	133	8e-28
21	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	3e-24
22	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	117	5e-23
23	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	115	2e-22
24	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	107	5e-20
25	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	105	2e-19
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	105	2e-19
27	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	3e-18
28	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	88	4e-14
29	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	88	4e-14
30	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	88	4e-14
31	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	88	4e-14
32	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	84	7e-13
33	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	84	7e-13
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
37	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	68	4e-08
38	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	60	1e-05
39	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	60	1e-05
40	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	52	0.002
41	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	48	0.038
42	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	48	0.038
43	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	48	0.038
44	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	46	0.15
45	emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chr...	46	0.15
46	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	46	0.15
47	gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence	46	0.15
48	gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 gen...	46	0.15
49	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.59
50	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.59
51	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.59
52	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	44	0.59
53	gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co...	42	2.3
54	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.3
55	gb|AE006293.1| Lactococcus lactis subsp. lactis IL1403 section 5...	42	2.3
56	emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in ...	42	2.3
57	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.3
58	gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c...	42	2.3
59	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	42	2.3
60	gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com...	42	2.3
61	dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK...	42	2.3
62	emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 i...	42	2.3
63	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.3
64	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	2.3
65	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.3
66	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.3
67	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.3
68	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	9.2
69	gb|AY176327.1| Staphylococcus phage K, complete genome	40	9.2
70	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	9.2
71	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	9.2
72	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	9.2
73	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	9.2
74	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	9.2
75	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	9.2
76	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	9.2
77	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	40	9.2
78	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	9.2
79	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	9.2
80	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	9.2
81	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	9.2
82	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	9.2
83	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	9.2
84	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	9.2
85	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	9.2
86	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	9.2
87	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	9.2
88	gb|AY954969.1| Bacteriophage G1, complete genome	40	9.2
89	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	9.2
90	emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in...	40	9.2
91	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	9.2
92	gb|L42814.1|SOYACCASEA Glycine max (clones 513 and 1221) acetyl ...	40	9.2

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score = 1051 bits (530), Expect = 0.0
 Identities = 540/542 (99%), Gaps = 1/542 (0%)
 Strand = Plus / Minus

                                                                        
Query: 130  caaatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 189
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 190  ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215

                                                                        
Query: 310  tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaa 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaa 1155

                                                                        
Query: 370  ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtca 1095

                                                                        
Query: 430  gcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagc 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 gcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagc 1035

                                                                        
Query: 490  agcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgtcccgcgagttcac 549
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1034 agcttctcgactgtcatctttggctgc-tcgaaggtcacgggcccgtcccgcgagttcac 976

                                                                        
Query: 550  cagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtc 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  cagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtc 916

                                                                        
Query: 610  gtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgac 669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  gtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgac 856

              
Query: 670  ga 671
            ||
Sbjct: 855  ga 854

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  704 bits (355), Expect = 0.0
 Identities = 358/359 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aataataattaataagctgaagctcaaattaatactttcttgttctgtttgcaacaaagc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7883 aataataattaataagctgaagctcaaattaatactttcttgttctgtttgcaacaaagc 7824

                                                                        
Query: 61   agaaggagtctccactgaaggaatgaatactgagagtgacaaatgataagtaggtgtatt 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7823 agaaggagtctccactgaaggaatgaatactgagagtgacaaatgataagtaggtgtatt 7764

                                                                        
Query: 121  ggtctttgccaaatgggtatactcaatatatttagagatatattaacaaaacatgcccag 180
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 7763 ggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgcccag 7704

                                                                        
Query: 181  caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7703 caatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcat 7644

                                                                        
Query: 241  gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttg 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7643 gcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttg 7584

                                                                       
Query: 301  gcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7583 gcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 7525



 Score =  551 bits (278), Expect = e-153
 Identities = 285/286 (99%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 7186

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7185 cccgtactctagcagcttctcgactgtcatctttggctgc-tcgaaggtcacgggcccgt 7127

                                                                        
Query: 537  cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7126 cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 7067

                                                          
Query: 597  gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 642
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7066 gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 7021



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 583  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 642
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753

                                    
Query: 643  aatggattgtcctgggaaggtgtc 666
             ||||| || || |||||||||||
Sbjct: 3752 gatggactgccccgggaaggtgtc 3729



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                        
Query: 433  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 492
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                   
Query: 493  ttctcgactgtcatctttggctg 515
            ||||| |  |||||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctg 3879



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 642  caatggattgtcctgggaaggtgtcgacga 671
            ||||||||||||||||||||||||||||||
Sbjct: 6880 caatggattgtcctgggaaggtgtcgacga 6851

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  609 bits (307), Expect = e-171
 Identities = 314/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1303

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1302 cccgtactctagcagcttctcgactgtcatctttggctgc-tcgaaggtcacgggcccgt 1244

                                                                        
Query: 537  cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1243 cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 1184

                                                                        
Query: 597  gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 656
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1183 gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 1124

                           
Query: 657  ggaaggtgtcgacga 671
            |||||||||||||||
Sbjct: 1123 ggaaggtgtcgacga 1109



 Score =  402 bits (203), Expect = e-109
 Identities = 234/239 (97%), Gaps = 4/239 (1%)
 Strand = Plus / Minus

                                                                        
Query: 125  tttgccaaatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaa 183
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 184  tcgcttggatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgc 242
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                                        
Query: 243  ttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttgg 301
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530

                                                                       
Query: 302  cattttggtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacc 359
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacc 1471

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  581 bits (293), Expect = e-162
 Identities = 405/441 (91%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                        
Query: 231  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 290
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 291  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 350
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                                                        
Query: 351  tcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 410
            |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310

                                                                        
Query: 411  ctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgag 470
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaag 1250

                                                                        
Query: 471  catgtgcccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgg 530
            |||||| |||||||| |||| |||||| || |||||||| |||||| |||||||| ||||
Sbjct: 1249 catgtggccgtactccagcaacttctccaccgtcatcttgggctgc-tcgaaggtgacgg 1191

                                                                        
Query: 531  gcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgaccc 590
            | ||||||||||||||||||||||||||||| |||||||| |||||||| ||    ||||
Sbjct: 1190 gtccgtcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacaccc 1131

                                                                        
Query: 591  acttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggatt 650
            ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 1130 acttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggact 1071

                                 
Query: 651  gtcctgggaaggtgtcgacga 671
            |||||||||||||||||||||
Sbjct: 1070 gtcctgggaaggtgtcgacga 1050

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  513 bits (259), Expect = e-142
 Identities = 302/315 (95%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 357 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433

                                                                       
Query: 417 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 373

                                                                       
Query: 477 cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
           ||||||||||||||||||||| |||||||||||||||||| || |||||||| || ||||
Sbjct: 372 cccgtactctagcagcttctccactgtcatctttggctgc-tcaaaggtcactggtccgt 314

                                                                       
Query: 537 cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 596
           ||||||||||||||||| ||||||||||||||||||| |||||||||   ||||||||||
Sbjct: 313 cccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgc 254

                                                                       
Query: 597 gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 656
           ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 253 gcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctg 194

                          
Query: 657 ggaaggtgtcgacga 671
           |||||||||||||||
Sbjct: 193 ggaaggtgtcgacga 179



 Score =  270 bits (136), Expect = 5e-69
 Identities = 238/269 (88%), Gaps = 11/269 (4%)
 Strand = Plus / Minus

                                                                       
Query: 97  tgacaaatgataagtaggtgtattggtctttgccaaatgggtatactcaatatatttaga 156
           |||| ||||||||||||   |||| |||||| |||||| |||||||||||||| ||||  
Sbjct: 803 tgaccaatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta-- 746

                                                                       
Query: 157 gatatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta---- 211
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
Sbjct: 745 --tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaa 688

                                                                       
Query: 212 -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcg 270
            | |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629

                                                                       
Query: 271 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 330
           || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569

                                        
Query: 331 ggcaaagtaccttgctgtgctcctttacc 359
           |||||||||||||||||||| ||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacc 540

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  513 bits (259), Expect = e-142
 Identities = 302/315 (95%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1223

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
            ||||||||||||||||||||| |||||||||||||||||| || |||||||| || ||||
Sbjct: 1222 cccgtactctagcagcttctccactgtcatctttggctgc-tcaaaggtcactggtccgt 1164

                                                                        
Query: 537  cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 596
            ||||||||||||||||| ||||||||||||||||||| |||||||||   ||||||||||
Sbjct: 1163 cccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgc 1104

                                                                        
Query: 597  gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 656
            ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1103 gcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctg 1044

                           
Query: 657  ggaaggtgtcgacga 671
            |||||||||||||||
Sbjct: 1043 ggaaggtgtcgacga 1029



 Score =  246 bits (124), Expect = 8e-62
 Identities = 189/208 (90%), Gaps = 7/208 (3%)
 Strand = Plus / Minus

                                                                        
Query: 158  atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 211
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 212  ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 271
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 272  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 331
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                        
Query: 332  gcaaagtaccttgctgtgctcctttacc 359
            ||||||||||||||||||| ||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  472 bits (238), Expect = e-130
 Identities = 275/286 (96%), Gaps = 1/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 357 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227

                                                                       
Query: 417 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 167

                                                                       
Query: 477 cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
           |||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||
Sbjct: 166 cccgtactctagcagcttctcgactgtcatctttggctgc-tcaaaggtcactggtccgt 108

                                                                       
Query: 537 cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 596
           ||||||||||||| ||| ||||||||||||||||||| |||||||||   ||||||||||
Sbjct: 107 cccgcgagttcacaagcttcttgccaatgttctcgataccggtagaggtcacccacttgc 48

                                                         
Query: 597 gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 642
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 47  gcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 2

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  404 bits (204), Expect = e-109
 Identities = 288/315 (91%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1234

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |||| |||||| || |||||||| |||||| |||||||| ||||| ||||
Sbjct: 1233 gccgtactccagcaacttctccaccgtcatcttgggctgc-tcgaaggtgacgggtccgt 1175

                                                                        
Query: 537  cccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgc 596
            ||||||||||||||||||||||||| |||||||| |||||||| ||    ||||||||||
Sbjct: 1174 cccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgc 1115

                                                                        
Query: 597  gcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctg 656
            |||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 1114 gcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctg 1055

                           
Query: 657  ggaaggtgtcgacga 671
            |||| ||||||||||
Sbjct: 1054 ggaangtgtcgacga 1040



 Score =  180 bits (91), Expect = 4e-42
 Identities = 171/195 (87%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                        
Query: 172  catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 225
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 226  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 284
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 285  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 344
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                           
Query: 345  ctgtgctcctttacc 359
             ||||||||||||||
Sbjct: 1413 ttgtgctcctttacc 1399

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  222 bits (112), Expect = 1e-54
 Identities = 280/334 (83%), Gaps = 4/334 (1%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                                                        
Query: 300  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 356
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1250 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1191

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1190 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 1132

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1131 ccctcgagttcaccagcctcttgccaatgttctc 1098



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022

                                     
Query: 647  gattgtcctgggaaggtgtcgacga 671
            ||||| ||||||||| |||||||||
Sbjct: 1021 gattggcctgggaagctgtcgacga 997

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  222 bits (112), Expect = 1e-54
 Identities = 280/334 (83%), Gaps = 4/334 (1%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                                                        
Query: 300  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 356
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1285 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1226

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1225 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 1167

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1166 ccctcgagttcaccagcctcttgccaatgttctc 1133



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057

                                     
Query: 647  gattgtcctgggaaggtgtcgacga 671
            ||||| ||||||||| |||||||||
Sbjct: 1056 gattggcctgggaagctgtcgacga 1032

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 240    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 300    ggcattttggtcggtgcaaccttccggcacgggca 334
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Plus

                                                                          
Query: 357    accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
              |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369

                                                                          
Query: 417    catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
              || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 108370 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 108429

                                                                          
Query: 477    cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
               |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 108430 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 108488

                                                
Query: 537    cccgcgagttcaccagcctcttgccaatgttctc 570
              ||| ||||||||||||||||||||||||||||||
Sbjct: 108489 ccctcgagttcaccagcctcttgccaatgttctc 108522



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 258    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 317
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 318    accttccggcacggg 332
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 587    acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 636
              ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 542    gagttcaccagcctcttgccaatgttctc 570
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 240   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 300   ggcattttggtcggtgcaaccttccggcacgggca 334
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Plus

                                                                         
Query: 357   accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
             |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246

                                                                         
Query: 417   catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
             || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 30247 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 30306

                                                                         
Query: 477   cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
              |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 30307 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 30365

                                               
Query: 537   cccgcgagttcaccagcctcttgccaatgttctc 570
             ||| ||||||||||||||||||||||||||||||
Sbjct: 30366 ccctcgagttcaccagcctcttgccaatgttctc 30399



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 258   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 317
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 318   accttccggcacggg 332
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 587   acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 636
             ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 542   gagttcaccagcctcttgccaatgttctc 570
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1255 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1196

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1195 tccgtactcgatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 1137

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027

                                     
Query: 647  gattgtcctgggaaggtgtcgacga 671
            ||||| ||||||||| |||||||||
Sbjct: 1026 gattggcctgggaagctgtcgacga 1002

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 240      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 300      ggcattttggtcggtgcaaccttccggcacgggca 334
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Plus

                                                                            
Query: 357      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508

                                                                            
Query: 417      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28303509 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28303568

                                                                            
Query: 477      cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
                 |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 28303569 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 28303627

                                                  
Query: 537      cccgcgagttcaccagcctcttgccaatgttctc 570
                ||| ||||||||||||||||||||||||||||||
Sbjct: 28303628 ccctcgagttcaccagcctcttgccaatgttctc 28303661



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 258      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 317
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 318      accttccggcacggg 332
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 587      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 636
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 542      gagttcaccagcctcttgccaatgttctc 570
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1249 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1190

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1189 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 1131

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021

                                     
Query: 647  gattgtcctgggaaggtgtcgacga 671
            ||||| ||||||||| |||||||||
Sbjct: 1020 gattggcctgggaagctgtcgacga 996

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1287 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1228

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1227 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 1169

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059

                                     
Query: 647  gattgtcctgggaaggtgtcgacga 671
            ||||| ||||||||| |||||||||
Sbjct: 1058 gattggcctgggaagctgtcgacga 1034

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1286 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1227

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1226 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 1168

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058

                                     
Query: 647  gattgtcctgggaaggtgtcgacga 671
            ||||| ||||||||| |||||||||
Sbjct: 1057 gattggcctgggaagctgtcgacga 1033

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1070 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1011

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1010 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 952

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 951  ccctcgagttcaccagcctcttgccaatgttctc 918



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                       
Query: 587 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842

                                    
Query: 647 gattgtcctgggaaggtgtcgacga 671
           ||||| ||||||||| |||||||||
Sbjct: 841 gattggcctgggaagctgtcgacga 817

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 240      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 300      ggcattttggtcggtgcaaccttccggcacgggca 334
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Plus

                                                                            
Query: 357      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957

                                                                            
Query: 417      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28285958 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28286017

                                                                            
Query: 477      cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
                 |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 28286018 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 28286076

                                                  
Query: 537      cccgcgagttcaccagcctcttgccaatgttctc 570
                ||| ||||||||||||||||||||||||||||||
Sbjct: 28286077 ccctcgagttcaccagcctcttgccaatgttctc 28286110



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 258      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 317
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 318      accttccggcacggg 332
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 587      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 636
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 542      gagttcaccagcctcttgccaatgttctc 570
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  133 bits (67), Expect = 8e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1291 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1232

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1231 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 1173

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063

                                     
Query: 647  gattgtcctgggaaggtgtcgacga 671
            ||||| ||||||||| |||||||||
Sbjct: 1062 gattggcctgggaagctgtcgacga 1038

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 246 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 305
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 306 ttggtcggtgcaaccttccggcacgggca 334
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  117 bits (59), Expect = 5e-23
 Identities = 87/95 (91%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 240  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 300  ggcattttggtcggtgcaaccttccggcacgggca 334
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469



 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                        
Query: 357  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299

                                                                        
Query: 417  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1298 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1239

                                                                        
Query: 477  cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
             |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 1238 tccgtactccatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 1180

                                              
Query: 537  cccgcgagttcaccagcctcttgccaatgttctc 570
            ||| ||||||||||||||||||||||||||||||
Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                        
Query: 587  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070

                                     
Query: 647  gattgtcctgggaaggtgtcgacga 671
            ||||| ||||||||| |||||||||
Sbjct: 1069 gattggcctgggaagctgtcgacga 1045

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  115 bits (58), Expect = 2e-22
 Identities = 191/234 (81%), Gaps = 1/234 (0%)
 Strand = Plus / Minus

                                                                        
Query: 433  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 492
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 493  ttctcgactgtcatctttggctgcttcgaaggtcacgggcccgtcccgcgagttcaccag 552
            |||||||  |||||||| ||||| | |||| |||   ||||| ||||  ||||| || ||
Sbjct: 1182 ttctcgatggtcatcttgggctggt-cgaacgtcggcggcccctccctggagttgacgag 1124

                                                                        
Query: 553  cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 612
            || ||||   ||||||||||  ||| |   ||||||||||||||||||||| ||||||||
Sbjct: 1123 ccgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgta 1064

                                                                  
Query: 613  cacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 666
            |||||| || ||||| || ||||| ||||| ||||| || || |||||||||||
Sbjct: 1063 cacccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtc 1010

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  107 bits (54), Expect = 5e-20
 Identities = 175/214 (81%), Gaps = 1/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 357 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 416
           |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505

                                                                       
Query: 417 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 476
           || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 504 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 445

                                                                       
Query: 477 cccgtactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgt 536
            |||||||| |  ||||| ||||  |||||||| |||||| |||||   |   || || |
Sbjct: 444 tccgtactcgatgagcttttcgatcgtcatcttgggctgc-tcgaactccggtgggccct 386

                                             
Query: 537 cccgcgagttcaccagcctcttgccaatgttctc 570
           ||| ||||||||||||||||||||||||||||||
Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 74/85 (87%)
 Strand = Plus / Minus

                                                                       
Query: 587 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276

                                    
Query: 647 gattgtcctgggaaggtgtcgacga 671
           ||||| ||||||||| |||||||||
Sbjct: 275 gattggcctgggaagctgtcgacga 251

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  105 bits (53), Expect = 2e-19
 Identities = 165/201 (82%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                        
Query: 361  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 420
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1000 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 941

                                                                        
Query: 421  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 480
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 940  tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 881

                                                                        
Query: 481  tactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgtcccg 540
            ||||| |||||||| || |  |||||||| ||||||  |||| |||   ||||| ||| |
Sbjct: 880  tactccagcagcttgtccagggtcatcttgggctgc-gcgaacgtcggcggcccctccag 822

                                 
Query: 541  cgagttcaccagcctcttgcc 561
            |||||||||||||||||||||
Sbjct: 821  cgagttcaccagcctcttgcc 801



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 589 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 648
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714

                                  
Query: 649 ttgtcctgggaaggtgtcgacga 671
           ||| || ||||||||||||||||
Sbjct: 713 ttggccggggaaggtgtcgacga 691



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 310  tcggtgcaaccttc 323
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  105 bits (53), Expect = 2e-19
 Identities = 165/201 (82%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                        
Query: 361  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 420
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 421  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 480
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 481  tactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgtcccg 540
            ||||| |||||||| || |  |||||||| ||||||  |||| |||   ||||| ||| |
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgc-gcgaacgtcggcggcccctccag 1016

                                 
Query: 541  cgagttcaccagcctcttgcc 561
            |||||||||||||||||||||
Sbjct: 1015 cgagttcaccagcctcttgcc 995



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 589 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 648
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908

                                  
Query: 649 ttgtcctgggaaggtgtcgacga 671
           ||| || ||||||||||||||||
Sbjct: 907 ttggccggggaaggtgtcgacga 885



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 310  tcggtgcaaccttc 323
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 240 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 300 ggcattttggtcggtgcaaccttccggcacgggca 334
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                       
Query: 362 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 421
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 422 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 481
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                               
Query: 482 actctagcagcttctcgactgtcatctttggctgct 517
           |||| |  ||||||||||  || ||||| |||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgct 764



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 599 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 658
           ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || |||
Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624

                      
Query: 659 aaggtgtcgac 669
           |||||||||||
Sbjct: 623 aaggtgtcgac 613

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 362  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 421
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 422  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 481
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                
Query: 482  actctagcagcttctcgactgtcatctttggctgct 517
            |||| |  ||||||||||  || ||||| |||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgct 1159



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 599  acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 658
            ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || |||
Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019

                       
Query: 659  aaggtgtcgac 669
            |||||||||||
Sbjct: 1018 aaggtgtcgac 1008

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                        
Query: 362  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 421
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 422  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 481
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                
Query: 482  actctagcagcttctcgactgtcatctttggctgct 517
            |||| |  ||||||||||  || ||||| |||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgct 1159

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 583  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 642
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184

                                    
Query: 643  aatggattgtcctgggaaggtgtc 666
             ||||| || || |||||||||||
Sbjct: 1183 gatggactgccccgggaaggtgtc 1160



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                        
Query: 433  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 492
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                   
Query: 493  ttctcgactgtcatctttggctg 515
            ||||| |  |||||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctg 1310

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 160/198 (80%), Gaps = 1/198 (0%)
 Strand = Plus / Minus

                                                                        
Query: 361  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 420
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1301 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1242

                                                                        
Query: 421  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 480
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1241 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1182

                                                                        
Query: 481  tactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgtcccg 540
            ||||| |||||||| || |  |||||||| ||||||  |||| |||   ||||| ||| |
Sbjct: 1181 tactccagcagcttgtccagggtcatcttgggctgcg-cgaacgtcggcggcccctccag 1123

                              
Query: 541  cgagttcaccagcctctt 558
            ||||||||||||||||||
Sbjct: 1122 cgagttcaccagcctctt 1105



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                        
Query: 589  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 648
            |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015

                                   
Query: 649  ttgtcctgggaaggtgtcgacga 671
            ||| || ||||||||||||||||
Sbjct: 1014 ttggccggggaaggtgtcgacga 992



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 310  tcggtgcaaccttc 323
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 160/198 (80%), Gaps = 1/198 (0%)
 Strand = Plus / Minus

                                                                        
Query: 361  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 420
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 421  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 480
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 481  tactctagcagcttctcgactgtcatctttggctgcttcgaaggtcacgggcccgtcccg 540
            ||||| |||||||| || |  |||||||| ||||||  |||| |||   ||||| ||| |
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcg-cgaacgtcggcggcccctccag 986

                              
Query: 541  cgagttcaccagcctctt 558
            ||||||||||||||||||
Sbjct: 985  cgagttcaccagcctctt 968



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                       
Query: 589 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 648
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878

                                  
Query: 649 ttgtcctgggaaggtgtcgacga 671
           ||| || ||||||||||||||||
Sbjct: 877 ttggccggggaaggtgtcgacga 855



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 309
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 310  tcggtgcaaccttc 323
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 379 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 438
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 439 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 494
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 240     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 300     ggcattttggtcggtgcaaccttccggcacgggca 334
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 240   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 299
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 300   ggcattttggtcggtgcaaccttccggcacgggca 334
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 625  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 666
            ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 605  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 664
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664

              
Query: 665  tc 666
            ||
Sbjct: 2663 tc 2662

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 605  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 664
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974

              
Query: 665  tc 666
            ||
Sbjct: 973  tc 972

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 588  cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 647
            ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || |
Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102

                                  
Query: 648  attgtcctgggaaggtgtcgac 669
            | ||||||||||||||||||||
Sbjct: 1101 actgtcctgggaaggtgtcgac 1080

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 608 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 667
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885

               
Query: 668 acga 671
           ||||
Sbjct: 884 acga 881

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 608 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 667
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886

               
Query: 668 acga 671
           ||||
Sbjct: 885 acga 882

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 102/128 (79%)
 Strand = Plus / Minus

                                                                        
Query: 390  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 449
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 450  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 509
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                    
Query: 510  tggctgct 517
             |||||||
Sbjct: 1243 cggctgct 1236



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 589  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 648
            |||||| | ||| ||||||||||| |||| ||| | ||  ||||| || || ||||| ||
Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106

                              
Query: 649  ttgtcctgggaaggtgtc 666
            ||| ||||||||||||||
Sbjct: 1105 ttggcctgggaaggtgtc 1088

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 625  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacga 671
            |||||||||||| || ||||| |||||||| |||||| | |||||||
Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacga 1080

---

>emb|AL157884.9| Human DNA sequence from clone RP11-462B18 on chromosome 9p13.1-21.1
             Contains a pseudogene similar to part of membrane guanylyl
             cyclase, a ribosomal protein S11 (RPS11) pseudogene, a
             novel gene and a CpG island, complete sequence
          Length = 176932

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 9     ttaataagctgaagctcaaattaatac 35
             |||||||||||| ||||||||||||||
Sbjct: 50310 ttaataagctgatgctcaaattaatac 50336

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 629  gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacga 671
            |||||||| || ||||| ||||| || ||||||||||||||||
Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacga 1122

---

>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence
          Length = 619

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 605 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 664
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559

                  
Query: 665 tcgacga 671
           |||||||
Sbjct: 558 tcgacga 552

---

>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence
          Length = 627

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 605 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 664
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567

                  
Query: 665 tcgacga 671
           |||||||
Sbjct: 566 tcgacga 560

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 382  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 431
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 395   catcacccagagctgcctggct 416
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 145   aatatatttagagatatattaa 166
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 602  tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 661
            ||||||||||| || ||||| | ||  || ||||||||||| || |||||||| ||||||
Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246

                      
Query: 662  gtgtcgacga 671
            | ||| ||||
Sbjct: 1245 gcgtcaacga 1236

---

>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 102    aatgataagtaggtgtattgg 122
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   tatatttagagatatattaac 167
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>gb|AE006293.1| Lactococcus lactis subsp. lactis IL1403 section 55 of 218 of the
            complete genome
          Length = 10029

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 29   ttaatactttcttgttctgtt 49
            |||||||||||||||||||||
Sbjct: 5007 ttaatactttcttgttctgtt 4987

---

>emb|BX248505.8| Zebrafish DNA sequence from clone CH211-87L2 in linkage group 14,
              complete sequence
          Length = 189425

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     tactttcttgttctgtttgca 53
              |||||||||||||||||||||
Sbjct: 142947 tactttcttgttctgtttgca 142967

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   tatatttagagatatattaac 167
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    aatgataagtaggtgtattgg 122
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 629 gcaccgaaaaagtcaatggattgtcctgggaag 661
           |||||||||||||| || |||||||| ||||||
Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaag 313

---

>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    aatgataagtaggtgtattgg 122
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077

---

>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 102  aatgataagtaggtgtattgg 122
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331

---

>emb|BX255919.15| Zebrafish DNA sequence from clone DKEY-259P11 in linkage group 8,
              complete sequence
          Length = 168607

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     tactttcttgttctgtttgca 53
              |||||||||||||||||||||
Sbjct: 109335 tactttcttgttctgtttgca 109355

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 216     aaacatcagatattaaaagtg 236
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 433  agctgcacacgcttgacattgtcctgctc 461
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 216     aaacatcagatattaaaagtg 236
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 216    aaacatcagatattaaaagtg 236
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 147  tatatttagagatatattaac 167
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 395  catcacccagagctgcctggctca 418
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AY176327.1| Staphylococcus phage K, complete genome
          Length = 127395

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 26    aaattaatactttcttgttctgtt 49
             ||||||||| ||||||||||||||
Sbjct: 18058 aaattaataatttcttgttctgtt 18081

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 391  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 450
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 451  ttgtcctgctcctggacgagcatg 474
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 426 gtcagcaagctgcacacgct 445
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tcagatattaaaagtggcat 240
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tcagatattaaaagtggcat 240
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   tcagatattaaaagtggcat 240
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 395  catcacccagagctgcctggctca 418
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   aatatatttagagatatatt 164
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                       
Query: 587 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 646
           |||||||| | ||| ||||| |||||||| | ||| | ||  |||||||| || || |||
Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530

                               
Query: 647 gattgtcctgggaaggtgtc 666
           ||||| || |||||||||||
Sbjct: 529 gattggccagggaaggtgtc 510

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    ttgacattgtcctgctcctg 464
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 395  catcacccagagctgcctggctca 418
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 249  ggtgtaaaggcagctgccgtcgtcgctc 276
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   aaacatgcccagcaatcgcttgga 192
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 395  catcacccagagctgcctggctca 418
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 395  catcacccagagctgcctggctca 418
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 395  catcacccagagctgcctggctca 418
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   tggcatgcttaaaaggtgta 254
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    ttgacattgtcctgctcctg 464
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 395  catcacccagagctgcctggctca 418
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AY954969.1| Bacteriophage G1, complete genome
          Length = 138715

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 26     aaattaatactttcttgttctgtt 49
              ||||||||| ||||||||||||||
Sbjct: 121558 aaattaataatttcttgttctgtt 121581

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   aatatatttagagatatatt 164
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

---

>emb|BX571709.23| Zebrafish DNA sequence from clone DKEY-251M8 in linkage group 11,
             complete sequence
          Length = 154382

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    tgaatactgagagtgacaaatgat 107
             ||||||||||||||| ||||||||
Sbjct: 41193 tgaatactgagagtgtcaaatgat 41216

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 220    atcagatattaaaagtggcatgct 243
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852

---

>gb|L42814.1|SOYACCASEA Glycine max (clones 513 and 1221) acetyl coA carboxylase (ACCase-A)
           gene, complete cds
          Length = 14882

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   ataataattaataagctgaa 21
           ||||||||||||||||||||
Sbjct: 929 ataataattaataagctgaa 948


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,642,638
Number of Sequences: 3902068
Number of extensions: 5642638
Number of successful extensions: 116556
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 116117
Number of HSP's gapped (non-prelim): 384
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---