ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal21k12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104878.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E12, full insert sequence Length = 1329 Score = 482 bits (243), Expect = e-133 Identities = 499/582 (85%), Gaps = 2/582 (0%) Strand = Plus / Minus Query: 101 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 160 ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct: 1155 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 1096 Query: 161 taaaatccgtgcaatccctcgtagcgaatcatcttcaatatcgcatccaatgtacctgta 220 ||||| ||||||||||| || || || |||||||| | ||||| || | |||||||| Sbjct: 1095 taaaacccgtgcaatccttcataccggatcatctttatgatcgcgtcaatcgtacctgtg 1036 Query: 221 tatctggacgccgcgtttctgccaatttcttgttttgcctgcaacctagacttgaccact 280 ||||||||| | | || |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 1035 tatctggacatcacattcctgccaatttcttgttttgcttgcaacctagacttaaccact 976 Query: 281 aacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaaaatacc 340 | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 975 agcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataagaatacc 916 Query: 341 tccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactggagacgc 400 ||||||||||| | |||||| || |||| | ||||||||| | ||| ||| |||||||| Sbjct: 915 tccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccggagacgc 856 Query: 401 tttgacagcgtttcatatatcataaactgaattgatggattgcataccataattagtgtc 460 |||| || |||||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 855 tttgccaatgtttcatagatcataaattgaattgatggattacataccataattagtgtt 796 Query: 461 ggaataagtcctttccagaatccacttatgcctgattcacgatagacttcccggatcgct 520 ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||| Sbjct: 795 ggaataagtcctttccagaatcctcttatgcctgattcacggtagacctcccggaccgct 736 Query: 521 tgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatccttaaga 580 |||||||| |||||||| ||||| ||||||||||||||||| || || ||||||||| Sbjct: 735 tgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctgtccttaaga 676 Query: 581 atatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctcttgga 639 || |||| | | ||||||||| |||| | | ||||| |||||||||||| | || || Sbjct: 675 at-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttttaga 617 Query: 640 ctctatcaccttcctttctgcctgcgtatgtgtctgcatacg 681 ||| || | |||| ||||||| || ||||||||||||||||| Sbjct: 616 ctccatgatcttcttttctgcttgtgtatgtgtctgcatacg 575
>dbj|AK066022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050L01, full insert sequence Length = 1354 Score = 482 bits (243), Expect = e-133 Identities = 499/582 (85%), Gaps = 2/582 (0%) Strand = Plus / Minus Query: 101 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 160 ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct: 1162 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 1103 Query: 161 taaaatccgtgcaatccctcgtagcgaatcatcttcaatatcgcatccaatgtacctgta 220 ||||| ||||||||||| || || || |||||||| | ||||| || | |||||||| Sbjct: 1102 taaaacccgtgcaatccttcataccggatcatctttatgatcgcgtcaatcgtacctgtg 1043 Query: 221 tatctggacgccgcgtttctgccaatttcttgttttgcctgcaacctagacttgaccact 280 ||||||||| | | || |||||||||||||||||||| |||||||||||||| |||||| Sbjct: 1042 tatctggacatcacattcctgccaatttcttgttttgcttgcaacctagacttaaccact 983 Query: 281 aacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaaaatacc 340 | ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 982 agcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataagaatacc 923 Query: 341 tccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactggagacgc 400 ||||||||||| | |||||| || |||| | ||||||||| | ||| ||| |||||||| Sbjct: 922 tccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccggagacgc 863 Query: 401 tttgacagcgtttcatatatcataaactgaattgatggattgcataccataattagtgtc 460 |||| || |||||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct: 862 tttgccaatgtttcatagatcataaattgaattgatggattacataccataattagtgtt 803 Query: 461 ggaataagtcctttccagaatccacttatgcctgattcacgatagacttcccggatcgct 520 ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||| Sbjct: 802 ggaataagtcctttccagaatcctcttatgcctgattcacggtagacctcccggaccgct 743 Query: 521 tgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatccttaaga 580 |||||||| |||||||| ||||| ||||||||||||||||| || || ||||||||| Sbjct: 742 tgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctgtccttaaga 683 Query: 581 atatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctcttgga 639 || |||| | | ||||||||| |||| | | ||||| |||||||||||| | || || Sbjct: 682 at-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttttaga 624 Query: 640 ctctatcaccttcctttctgcctgcgtatgtgtctgcatacg 681 ||| || | |||| ||||||| || ||||||||||||||||| Sbjct: 623 ctccatgatcttcttttctgcttgtgtatgtgtctgcatacg 582
>ref|XM_464736.1| Oryza sativa (japonica cultivar-group), mRNA Length = 822 Score = 270 bits (136), Expect = 6e-69 Identities = 293/343 (85%), Gaps = 2/343 (0%) Strand = Plus / Minus Query: 340 ctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactggagacg 399 |||||||||||| | |||||| || |||| | ||||||||| | ||| ||| ||||||| Sbjct: 792 ctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccggagacg 733 Query: 400 ctttgacagcgtttcatatatcataaactgaattgatggattgcataccataattagtgt 459 ||||| || |||||||| |||||||| || ||||||||||| ||||||||||||||||| Sbjct: 732 ctttgccaatgtttcatagatcataaattgtattgatggattacataccataattagtgt 673 Query: 460 cggaataagtcctttccagaatccacttatgcctgattcacgatagacttcccggatcgc 519 |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||| Sbjct: 672 cggaataagtcctttccagaatcctcttatgcctgattcacggtagacctcccggaccgc 613 Query: 520 ttgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatccttaag 579 ||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct: 612 ttgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctatccttaag 553 Query: 580 aatatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctcttgg 638 ||| |||| | | ||||||||| |||| | | ||||| |||||||||||| | || | Sbjct: 552 aat-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttttag 494 Query: 639 actctatcaccttcctttctgcctgcgtatgtgtctgcatacg 681 |||| || | |||| ||||||| |||||||||||||||||||| Sbjct: 493 actccatgatcttcttttctgcttgcgtatgtgtctgcatacg 451
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 115 bits (58), Expect = 2e-22 Identities = 67/70 (95%) Strand = Plus / Minus Query: 446 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 505 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 7021308 accataattagtgtcggaataagtcctttccagaatcctcttatgcctgattcacggtag 7021249 Query: 506 acttcccgga 515 || ||||||| Sbjct: 7021248 acctcccgga 7021239 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 101 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 160 ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct: 7023145 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 7023086 Query: 161 taaaatccgtgcaatccctcgtagcgaatcatctt 195 ||||| ||||||||||| || || || |||||||| Sbjct: 7023085 taaaacccgtgcaatccttcataccggatcatctt 7023051 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 275 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 334 ||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 7022192 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 7022133 Query: 335 aatacct 341 ||||||| Sbjct: 7022132 aatacct 7022126 Score = 81.8 bits (41), Expect = 3e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 336 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 395 |||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| ||| Sbjct: 7021503 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 7021444 Query: 396 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 448 ||||||||| || |||||||| |||||||| || ||||||||||| |||||| Sbjct: 7021443 gacgctttgccaatgtttcatagatcataaattgtattgatggattacatacc 7021391 Score = 81.8 bits (41), Expect = 3e-12 Identities = 132/160 (82%), Gaps = 2/160 (1%) Strand = Plus / Minus Query: 517 cgcttgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatcctt 576 |||||||||||| |||||||| ||||| ||||||||||||||||| || |||||||| Sbjct: 7020800 cgcttgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctatcctt 7020741 Query: 577 aagaatatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctct 635 |||||| |||| | | ||||||||| |||| | | ||||| |||||||||||| | | Sbjct: 7020740 aagaat-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttt 7020682 Query: 636 tggactctatcaccttcctttctgcctgcgtatgtgtctg 675 | ||||| || | |||| ||||||| |||||||||||||| Sbjct: 7020681 tagactccatgatcttcttttctgcttgcgtatgtgtctg 7020642 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 239 ctgccaatttcttgttttgcctgcaacctagact 272 |||||||||||||||||||| ||||||||||||| Sbjct: 7022774 ctgccaatttcttgttttgcttgcaacctagact 7022741
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 115 bits (58), Expect = 2e-22 Identities = 67/70 (95%) Strand = Plus / Minus Query: 446 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 505 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 24727 accataattagtgtcggaataagtcctttccagaatcctcttatgcctgattcacggtag 24668 Query: 506 acttcccgga 515 || ||||||| Sbjct: 24667 acctcccgga 24658 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 101 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 160 ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct: 26564 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 26505 Query: 161 taaaatccgtgcaatccctcgtagcgaatcatctt 195 ||||| ||||||||||| || || || |||||||| Sbjct: 26504 taaaacccgtgcaatccttcataccggatcatctt 26470 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 275 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 334 ||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 25611 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 25552 Query: 335 aatacct 341 ||||||| Sbjct: 25551 aatacct 25545 Score = 81.8 bits (41), Expect = 3e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 336 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 395 |||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| ||| Sbjct: 24922 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 24863 Query: 396 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 448 ||||||||| || |||||||| |||||||| || ||||||||||| |||||| Sbjct: 24862 gacgctttgccaatgtttcatagatcataaattgtattgatggattacatacc 24810 Score = 81.8 bits (41), Expect = 3e-12 Identities = 132/160 (82%), Gaps = 2/160 (1%) Strand = Plus / Minus Query: 517 cgcttgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatcctt 576 |||||||||||| |||||||| ||||| ||||||||||||||||| || |||||||| Sbjct: 24219 cgcttgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctatcctt 24160 Query: 577 aagaatatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctct 635 |||||| |||| | | ||||||||| |||| | | ||||| |||||||||||| | | Sbjct: 24159 aagaat-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttt 24101 Query: 636 tggactctatcaccttcctttctgcctgcgtatgtgtctg 675 | ||||| || | |||| ||||||| |||||||||||||| Sbjct: 24100 tagactccatgatcttcttttctgcttgcgtatgtgtctg 24061 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 239 ctgccaatttcttgttttgcctgcaacctagact 272 |||||||||||||||||||| ||||||||||||| Sbjct: 26193 ctgccaatttcttgttttgcttgcaacctagact 26160
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 115 bits (58), Expect = 2e-22 Identities = 67/70 (95%) Strand = Plus / Minus Query: 446 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 505 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 114930 accataattagtgtcggaataagtcctttccagaatcctcttatgcctgattcacggtag 114871 Query: 506 acttcccgga 515 || ||||||| Sbjct: 114870 acctcccgga 114861 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 101 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 160 ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct: 116767 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 116708 Query: 161 taaaatccgtgcaatccctcgtagcgaatcatctt 195 ||||| ||||||||||| || || || |||||||| Sbjct: 116707 taaaacccgtgcaatccttcataccggatcatctt 116673 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 275 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 334 ||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 115814 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 115755 Query: 335 aatacct 341 ||||||| Sbjct: 115754 aatacct 115748 Score = 81.8 bits (41), Expect = 3e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 336 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 395 |||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| ||| Sbjct: 115125 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 115066 Query: 396 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 448 ||||||||| || |||||||| |||||||| || ||||||||||| |||||| Sbjct: 115065 gacgctttgccaatgtttcatagatcataaattgtattgatggattacatacc 115013 Score = 81.8 bits (41), Expect = 3e-12 Identities = 132/160 (82%), Gaps = 2/160 (1%) Strand = Plus / Minus Query: 517 cgcttgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatcctt 576 |||||||||||| |||||||| ||||| ||||||||||||||||| || |||||||| Sbjct: 114422 cgcttgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctatcctt 114363 Query: 577 aagaatatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctct 635 |||||| |||| | | ||||||||| |||| | | ||||| |||||||||||| | | Sbjct: 114362 aagaat-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttt 114304 Query: 636 tggactctatcaccttcctttctgcctgcgtatgtgtctg 675 | ||||| || | |||| ||||||| |||||||||||||| Sbjct: 114303 tagactccatgatcttcttttctgcttgcgtatgtgtctg 114264 Score = 60.0 bits (30), Expect = 1e-05 Identities = 33/34 (97%) Strand = Plus / Minus Query: 239 ctgccaatttcttgttttgcctgcaacctagact 272 |||||||||||||||||||| ||||||||||||| Sbjct: 116396 ctgccaatttcttgttttgcttgcaacctagact 116363
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Plus Query: 446 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 505 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 154618 accataattagtgttggaataagtcctttccagaatcctcttatgcctgattcacggtag 154677 Query: 506 acttcccgga 515 || ||||||| Sbjct: 154678 acctcccgga 154687 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 101 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 160 ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct: 152798 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 152857 Query: 161 taaaatccgtgcaatccctcgtagcgaatcatctt 195 ||||| ||||||||||| || || || |||||||| Sbjct: 152858 taaaacccgtgcaatccttcataccggatcatctt 152892 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 275 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 334 ||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 153739 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 153798 Query: 335 aatacct 341 ||||||| Sbjct: 153799 aatacct 153805 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 336 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 395 |||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| ||| Sbjct: 154422 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 154481 Query: 396 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 448 ||||||||| || |||||||| |||||||| |||||||||||||| |||||| Sbjct: 154482 gacgctttgccaatgtttcatagatcataaattgaattgatggattacatacc 154534 Score = 65.9 bits (33), Expect = 2e-07 Identities = 130/160 (81%), Gaps = 2/160 (1%) Strand = Plus / Plus Query: 517 cgcttgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatcctt 576 |||||||||||| |||||||| ||||| ||||||||||||||||| || || ||||| Sbjct: 155109 cgcttgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctgtcctt 155168 Query: 577 aagaatatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctct 635 |||||| |||| | | ||||||||| |||| | | ||||| |||||||||||| | | Sbjct: 155169 aagaat-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttt 155227 Query: 636 tggactctatcaccttcctttctgcctgcgtatgtgtctg 675 | ||||| || | |||| ||||||| || ||||||||||| Sbjct: 155228 tagactccatgatcttcttttctgcttgtgtatgtgtctg 155267 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 213 tacctgtatatctggacgccgcgtttctgccaatttcttgttttgcctgcaacctagact 272 ||||||| ||||||||| | | || |||||||||||||||||||| ||||||||||||| Sbjct: 153147 tacctgtgtatctggacatcacattcctgccaatttcttgttttgcttgcaacctagact 153206
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Plus Query: 446 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 505 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 30799 accataattagtgttggaataagtcctttccagaatcctcttatgcctgattcacggtag 30858 Query: 506 acttcccgga 515 || ||||||| Sbjct: 30859 acctcccgga 30868 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 101 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 160 ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct: 28979 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 29038 Query: 161 taaaatccgtgcaatccctcgtagcgaatcatctt 195 ||||| ||||||||||| || || || |||||||| Sbjct: 29039 taaaacccgtgcaatccttcataccggatcatctt 29073 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 275 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 334 ||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 29920 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 29979 Query: 335 aatacct 341 ||||||| Sbjct: 29980 aatacct 29986 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 336 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 395 |||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| ||| Sbjct: 30603 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 30662 Query: 396 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 448 ||||||||| || |||||||| |||||||| |||||||||||||| |||||| Sbjct: 30663 gacgctttgccaatgtttcatagatcataaattgaattgatggattacatacc 30715 Score = 65.9 bits (33), Expect = 2e-07 Identities = 130/160 (81%), Gaps = 2/160 (1%) Strand = Plus / Plus Query: 517 cgcttgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatcctt 576 |||||||||||| |||||||| ||||| ||||||||||||||||| || || ||||| Sbjct: 31290 cgcttgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctgtcctt 31349 Query: 577 aagaatatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctct 635 |||||| |||| | | ||||||||| |||| | | ||||| |||||||||||| | | Sbjct: 31350 aagaat-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttt 31408 Query: 636 tggactctatcaccttcctttctgcctgcgtatgtgtctg 675 | ||||| || | |||| ||||||| || ||||||||||| Sbjct: 31409 tagactccatgatcttcttttctgcttgtgtatgtgtctg 31448 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 213 tacctgtatatctggacgccgcgtttctgccaatttcttgttttgcctgcaacctagact 272 ||||||| ||||||||| | | || |||||||||||||||||||| ||||||||||||| Sbjct: 29328 tacctgtgtatctggacatcacattcctgccaatttcttgttttgcttgcaacctagact 29387
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Plus Query: 446 accataattagtgtcggaataagtcctttccagaatccacttatgcctgattcacgatag 505 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 19435392 accataattagtgttggaataagtcctttccagaatcctcttatgcctgattcacggtag 19435451 Query: 506 acttcccgga 515 || ||||||| Sbjct: 19435452 acctcccgga 19435461 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Plus Query: 101 accataaaaaggaccgaggcggcaaaaacactctgtacaatctttgtgcccattcctttg 160 ||||||||||| || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct: 19433572 accataaaaagaactgaggcggcaaagacgctctgtacaatcttcgtacccattcctttg 19433631 Query: 161 taaaatccgtgcaatccctcgtagcgaatcatctt 195 ||||| ||||||||||| || || || |||||||| Sbjct: 19433632 taaaacccgtgcaatccttcataccggatcatctt 19433666 Score = 93.7 bits (47), Expect = 7e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 275 accactaacaacgggtaggtcacaacagtagctcccagctttgctattgcacctaataaa 334 ||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 19434513 accactagcaatgggtatgtcacaacagtagctccgagctttgctattgcacctaataag 19434572 Query: 335 aatacct 341 ||||||| Sbjct: 19434573 aatacct 19434579 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 336 atacctccatagcagtgatgttcttcttggggaatcgctttccagaccgcttcgactgga 395 |||||||||||||||| | |||||| || |||| | ||||||||| | ||| ||| ||| Sbjct: 19435196 atacctccatagcagtaaggttcttttttgggagttcctttccagatctctttgaccgga 19435255 Query: 396 gacgctttgacagcgtttcatatatcataaactgaattgatggattgcatacc 448 ||||||||| || |||||||| |||||||| |||||||||||||| |||||| Sbjct: 19435256 gacgctttgccaatgtttcatagatcataaattgaattgatggattacatacc 19435308 Score = 65.9 bits (33), Expect = 2e-07 Identities = 130/160 (81%), Gaps = 2/160 (1%) Strand = Plus / Plus Query: 517 cgcttgaattgtgccatatgggcgaggtttttcagaatcaagttttgctaatctatcctt 576 |||||||||||| |||||||| ||||| ||||||||||||||||| || || ||||| Sbjct: 19435883 cgcttgaattgtcccatatggacgaggcttttcagaatcaagtttatacaacctgtcctt 19435942 Query: 577 aagaatatgag-catncattgaattgaccctgggtatttccttaagcaaaagctccctct 635 |||||| |||| | | ||||||||| |||| | | ||||| |||||||||||| | | Sbjct: 19435943 aagaat-tgagacctctattgaattggccctagcaacatccttcagcaaaagctcctttt 19436001 Query: 636 tggactctatcaccttcctttctgcctgcgtatgtgtctg 675 | ||||| || | |||| ||||||| || ||||||||||| Sbjct: 19436002 tagactccatgatcttcttttctgcttgtgtatgtgtctg 19436041 Score = 63.9 bits (32), Expect = 6e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 213 tacctgtatatctggacgccgcgtttctgccaatttcttgttttgcctgcaacctagact 272 ||||||| ||||||||| | | || |||||||||||||||||||| ||||||||||||| Sbjct: 19433921 tacctgtgtatctggacatcacattcctgccaatttcttgttttgcttgcaacctagact 19433980 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tttgtgcccattcctttgta 162 |||||||||||||||||||| Sbjct: 13862103 tttgtgcccattcctttgta 13862122
>gb|AY088311.1| Arabidopsis thaliana clone 5504 mRNA, complete sequence Length = 1359 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 125 aaaacactctgtacaatctttgtgcccattcctttgtaaaatccgt 170 ||||| ||||| ||||||||||||| ||| ||||||||||| |||| Sbjct: 1092 aaaacgctctgcacaatctttgtgctcatacctttgtaaaacccgt 1047
>dbj|AK059462.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D01, full insert sequence Length = 1400 Score = 50.1 bits (25), Expect = 0.010 Identities = 31/33 (93%) Strand = Plus / Minus Query: 649 cttcctttctgcctgcgtatgtgtctgcatacg 681 |||| ||||||| |||||||||||||||||||| Sbjct: 503 cttcttttctgcttgcgtatgtgtctgcatacg 471
>gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 map CIC10A06, complete sequence Length = 108847 Score = 48.1 bits (24), Expect = 0.038 Identities = 78/96 (81%) Strand = Plus / Plus Query: 125 aaaacactctgtacaatctttgtgcccattcctttgtaaaatccgtgcaatccctcgtag 184 ||||| ||||| ||||||||||||| ||| ||||| ||||| |||| | || || || Sbjct: 52769 aaaacgctctgcacaatctttgtgctcatccctttataaaacccgtaaagcccttcatat 52828 Query: 185 cgaatcatcttcaatatcgcatccaatgtacctgta 220 |||||||| |||| ||||| |||||||| |||||| Sbjct: 52829 cgaatcattttcagaatcgcgtccaatgttcctgta 52864
>ref|NM_187455.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1035 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 122 gcaaaaacactctgtacaatctttgtgcccattcctttgtaaa 164 ||||||||||| ||||| || ||||||| ||||||||| |||| Sbjct: 926 gcaaaaacactttgtacgatttttgtgctcattcctttataaa 884
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 122 gcaaaaacactctgtacaatctttgtgcccattcctttgtaaa 164 ||||||||||| ||||| || ||||||| ||||||||| |||| Sbjct: 8724757 gcaaaaacactttgtacgatttttgtgctcattcctttataaa 8724715
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02, complete sequence Length = 115270 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 122 gcaaaaacactctgtacaatctttgtgcccattcctttgtaaa 164 ||||||||||| ||||| || ||||||| ||||||||| |||| Sbjct: 68408 gcaaaaacactttgtacgatttttgtgctcattcctttataaa 68366
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 122 gcaaaaacactctgtacaatctttgtgcccattcctttgtaaa 164 ||||||||||| ||||| || ||||||| ||||||||| |||| Sbjct: 8722592 gcaaaaacactttgtacgatttttgtgctcattcctttataaa 8722550
>dbj|AK101498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043H11, full insert sequence Length = 1418 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 122 gcaaaaacactctgtacaatctttgtgcccattcctttgtaaa 164 ||||||||||| ||||| || ||||||| ||||||||| |||| Sbjct: 995 gcaaaaacactttgtacgatttttgtgctcattcctttataaa 953
>ref|NM_129555.2| Arabidopsis thaliana binding AT2G39970 mRNA, complete cds Length = 1368 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 125 aaaacactctgtacaatctttgtgcccattcctttgtaaaatccgt 170 ||||| ||||| ||||||||||||| ||| ||||| ||||| |||| Sbjct: 1092 aaaacgctctgcacaatctttgtgctcatccctttataaaacccgt 1047
>gb|AY039858.1| Arabidopsis thaliana At2g39970/T28M21.13 mRNA, complete cds Length = 1331 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 125 aaaacactctgtacaatctttgtgcccattcctttgtaaaatccgt 170 ||||| ||||| ||||||||||||| ||| ||||| ||||| |||| Sbjct: 1062 aaaacgctctgcacaatctttgtgctcatccctttataaaacccgt 1017
>emb|BX820432.1|CNS0A9K1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH32ZB05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1307 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 125 aaaacactctgtacaatctttgtgcccattcctttgtaaaatccgt 170 ||||| ||||| ||||||||||||| ||| ||||| ||||| |||| Sbjct: 1080 aaaacgctctgcacaatctttgtgctcatccctttataaaacccgt 1035
>emb|BX821427.1|CNS0A9AS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL40ZG09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1255 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 125 aaaacactctgtacaatctttgtgcccattcctttgtaaaatccgt 170 ||||| ||||| ||||||||||||| ||| ||||| ||||| |||| Sbjct: 1038 aaaacgctctgcacaatctttgtgctcatccctttataaaacccgt 993
>gb|BT003020.1| Arabidopsis thaliana At2g39970/T28M21.13 gene, complete cds Length = 996 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 125 aaaacactctgtacaatctttgtgcccattcctttgtaaaatccgt 170 ||||| ||||| ||||||||||||| ||| ||||| ||||| |||| Sbjct: 914 aaaacgctctgcacaatctttgtgctcatccctttataaaacccgt 869
>dbj|AB047148.1| Arabidopsis thaliana mRNA for 36kDa-peroxisomal membrane protein (PMP36), complete cds Length = 996 Score = 44.1 bits (22), Expect = 0.60 Identities = 40/46 (86%) Strand = Plus / Minus Query: 125 aaaacactctgtacaatctttgtgcccattcctttgtaaaatccgt 170 ||||| ||||| ||||||||||||| ||| ||||| ||||| |||| Sbjct: 914 aaaacgctctgcacaatctttgtgctcatccctttataaaacccgt 869
>emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 on chromosome 6q16.3-21 Contains a novel gene and a chromatin assembly factor 1 p60 subunit (CHAF1B) pseudogene, complete sequence Length = 136299 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 tcaagttttgctaatctatcc 574 ||||||||||||||||||||| Sbjct: 26958 tcaagttttgctaatctatcc 26978
>ref|NM_105681.1| Arabidopsis thaliana kinase AT1G70130 mRNA, complete cds Length = 1971 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aacttgaccagctcctcctt 99 |||||||||||||||||||| Sbjct: 195 aacttgaccagctcctcctt 176
>gb|AC165278.4| Mus musculus chromosome 15, clone RP23-250O18, complete sequence Length = 187758 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 595 tgaattgaccctgggtatttcctt 618 |||||||||||||||| ||||||| Sbjct: 109912 tgaattgaccctgggtctttcctt 109889
>gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, complete sequence Length = 246043 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 aactgaattgatggattgca 444 |||||||||||||||||||| Sbjct: 115780 aactgaattgatggattgca 115799
>ref|XM_751431.1| Ustilago maydis 521 hypothetical protein (UM00377.1) partial mRNA Length = 1857 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 ccgcgtttctgccaatttcttgtt 254 |||||||||||||||| ||||||| Sbjct: 666 ccgcgtttctgccaatgtcttgtt 689
>gb|AC092032.5| Homo sapiens BAC clone RP11-730B22 from 7, complete sequence Length = 176398 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ctttgtaaaatccgtgcaat 175 |||||||||||||||||||| Sbjct: 124150 ctttgtaaaatccgtgcaat 124131
>emb|AL713914.10| Mouse DNA sequence from clone RP24-293E17 on chromosome 11 Contains the 3' end of the Cobl gene for cordon-bleu and a novel gene, complete sequence Length = 188406 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 gatctagtaagaagcagagt 51 |||||||||||||||||||| Sbjct: 49498 gatctagtaagaagcagagt 49479
>emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chromosome 11 Contains the 3' end of the Asb3 gene for ankyrin repeat and SOCS box-containing protein 3 and two zinc finger protein pseudogenes, complete sequence Length = 173655 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 agctcctccttcaccataaa 108 |||||||||||||||||||| Sbjct: 30873 agctcctccttcaccataaa 30892
>gb|AC106865.4| Homo sapiens BAC clone RP11-153M7 from 4, complete sequence Length = 152118 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 tggattgcataccataatta 455 |||||||||||||||||||| Sbjct: 107662 tggattgcataccataatta 107681
>gb|AC079349.6| Homo sapiens BAC clone RP11-436A7 from 4, complete sequence Length = 193632 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 tggattgcataccataatta 455 |||||||||||||||||||| Sbjct: 136270 tggattgcataccataatta 136251
>gb|AC011337.5| Homo sapiens chromosome 5 clone CTC-251D13, complete sequence Length = 94625 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 atcatcttcaatatcgcatccaat 211 ||||||||||||||| |||||||| Sbjct: 51343 atcatcttcaatatcccatccaat 51320
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 acttgaccagctcctccttc 100 |||||||||||||||||||| Sbjct: 3961790 acttgaccagctcctccttc 3961771
>emb|BX088718.7| Zebrafish DNA sequence from clone DKEY-185E18, complete sequence Length = 192836 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 taataaaaatacctccatag 347 |||||||||||||||||||| Sbjct: 152432 taataaaaatacctccatag 152451
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tttgtgcccattcctttgta 162 |||||||||||||||||||| Sbjct: 111587 tttgtgcccattcctttgta 111606
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tttgtgcccattcctttgta 162 |||||||||||||||||||| Sbjct: 15780 tttgtgcccattcctttgta 15799
>gb|AC002062.1|F20P5 Sequence of BAC F20P5 from Arabidopsis thaliana chromosome 1, complete sequence Length = 114505 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aacttgaccagctcctcctt 99 |||||||||||||||||||| Sbjct: 51081 aacttgaccagctcctcctt 51062
>emb|AL591913.14| Mouse DNA sequence from clone RP23-120A4 on chromosome 15, complete sequence Length = 196812 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 595 tgaattgaccctgggtatttcctt 618 |||||||||||||||| ||||||| Sbjct: 10677 tgaattgaccctgggtctttcctt 10700 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,825,317 Number of Sequences: 3902068 Number of extensions: 5825317 Number of successful extensions: 116424 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116116 Number of HSP's gapped (non-prelim): 302 length of query: 681 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 658 effective length of database: 17,143,297,704 effective search space: 11280289889232 effective search space used: 11280289889232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
