ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal21j24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017484.1| Zea mays clone EL01N0412C09.c mRNA sequence Length = 1014 Score = 157 bits (79), Expect = 3e-35 Identities = 121/135 (89%) Strand = Plus / Minus Query: 244 gagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatg 303 ||||||||||||||| || ||||||||||||||||||| ||| |||||||||| ||||| Sbjct: 826 gagggaagcgacgaagtgcatctggacctcctcgtcgatcgtcaagaagaggggaacatg 767 Query: 304 cacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacata 363 ||| ||||| || ||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct: 766 cacgaacagggatttgatgccgtgttgctccgcgaaccgaagagagtggtagtacacgta 707 Query: 364 gttgcacacgaaccg 378 |||||| || ||||| Sbjct: 706 gttgcatacaaaccg 692
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 139 bits (70), Expect = 7e-30 Identities = 127/146 (86%) Strand = Plus / Minus Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 13761893 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 13761834 Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct: 13761833 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 13761774 Query: 353 tagtacacatagttgcacacgaaccg 378 || |||||||||||||| |||||||| Sbjct: 13761773 taatacacatagttgcatacgaaccg 13761748
>dbj|AP005577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1655_B12 Length = 132736 Score = 139 bits (70), Expect = 7e-30 Identities = 127/146 (86%) Strand = Plus / Minus Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 11377 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 11318 Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct: 11317 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaagagagtga 11258 Query: 353 tagtacacatagttgcacacgaaccg 378 || |||||||||||||| |||||||| Sbjct: 11257 taatacacatagttgcatacgaaccg 11232
>dbj|AK105043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A05, full insert sequence Length = 1012 Score = 131 bits (66), Expect = 2e-27 Identities = 126/146 (86%) Strand = Plus / Minus Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818 Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758 Query: 353 tagtacacatagttgcacacgaaccg 378 || |||||||||||||| |||||||| Sbjct: 757 taatacacatagttgcatacgaaccg 732
>dbj|AK060069.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H12, full insert sequence Length = 1012 Score = 131 bits (66), Expect = 2e-27 Identities = 126/146 (86%) Strand = Plus / Minus Query: 233 agagcttcgacgagggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaag 292 |||||||||| |||||||| || ||||| |||||||||||||| |||| ||| |||| Sbjct: 877 agagcttcgagaagggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaac 818 Query: 293 aggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccggagagagtgg 352 ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||| Sbjct: 817 aggggcacatgtacaaacagagatttgatgccgtgttgctctgcaaaccgaaaagagtga 758 Query: 353 tagtacacatagttgcacacgaaccg 378 || |||||||||||||| |||||||| Sbjct: 757 taatacacatagttgcatacgaaccg 732
>ref|XM_479284.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1227 Score = 123 bits (62), Expect = 4e-25 Identities = 116/134 (86%) Strand = Plus / Minus Query: 245 agggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatgc 304 |||||||| || ||||| |||||||||||||| |||| ||| |||| ||||||||||| Sbjct: 941 agggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaacaggggcacatgt 882 Query: 305 acaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacatag 364 ||||||||||| ||||||||||| ||||| |||||||| ||||| || || ||||||||| Sbjct: 881 acaaacagagatttgatgccgtgttgctctgcgaaccgaagagaatgataatacacatag 822 Query: 365 ttgcacacgaaccg 378 ||||| || ||||| Sbjct: 821 ttgcatacaaaccg 808
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 123 bits (62), Expect = 4e-25 Identities = 116/134 (86%) Strand = Plus / Plus Query: 245 agggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatgc 304 |||||||| || ||||| |||||||||||||| |||| ||| |||| ||||||||||| Sbjct: 26565367 agggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaacaggggcacatgt 26565426 Query: 305 acaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacatag 364 ||||||||||| ||||||||||| ||||| |||||||| ||||| || || ||||||||| Sbjct: 26565427 acaaacagagatttgatgccgtgttgctctgcgaaccgaagagaatgataatacacatag 26565486 Query: 365 ttgcacacgaaccg 378 ||||| || ||||| Sbjct: 26565487 ttgcatacaaaccg 26565500
>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1340_C08 Length = 192167 Score = 123 bits (62), Expect = 4e-25 Identities = 116/134 (86%) Strand = Plus / Plus Query: 245 agggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatgc 304 |||||||| || ||||| |||||||||||||| |||| ||| |||| ||||||||||| Sbjct: 110638 agggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaacaggggcacatgt 110697 Query: 305 acaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacatag 364 ||||||||||| ||||||||||| ||||| |||||||| ||||| || || ||||||||| Sbjct: 110698 acaaacagagatttgatgccgtgttgctctgcgaaccgaagagaatgataatacacatag 110757 Query: 365 ttgcacacgaaccg 378 ||||| || ||||| Sbjct: 110758 ttgcatacaaaccg 110771
>dbj|AK067207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096M06, full insert sequence Length = 1228 Score = 123 bits (62), Expect = 4e-25 Identities = 116/134 (86%) Strand = Plus / Minus Query: 245 agggaagcgacgaaatggatctggacctcctcgtcgactgtcgagaagaggggcacatgc 304 |||||||| || ||||| |||||||||||||| |||| ||| |||| ||||||||||| Sbjct: 942 agggaagcaacaaaatgcatctggacctcctcatcgatcgtcaagaacaggggcacatgt 883 Query: 305 acaaacagagacttgatgccgtgctgctccgcgaaccggagagagtggtagtacacatag 364 ||||||||||| ||||||||||| ||||| |||||||| ||||| || || ||||||||| Sbjct: 882 acaaacagagatttgatgccgtgttgctctgcgaaccgaagagaatgataatacacatag 823 Query: 365 ttgcacacgaaccg 378 ||||| || ||||| Sbjct: 822 ttgcatacaaaccg 809
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 9e-05 Identities = 76/92 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 14273048 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14272989 Query: 344 agagagtggtagtacacatagttgcacacgaa 375 ||||| ||||| || ||||||||||| ||||| Sbjct: 14272988 agagattggtaatagacatagttgcatacgaa 14272957
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 56.0 bits (28), Expect = 9e-05 Identities = 76/92 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 22277 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 22218 Query: 344 agagagtggtagtacacatagttgcacacgaa 375 ||||| ||||| || ||||||||||| ||||| Sbjct: 22217 agagattggtaatagacatagttgcatacgaa 22186
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 56.0 bits (28), Expect = 9e-05 Identities = 76/92 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 84436 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 84377 Query: 344 agagagtggtagtacacatagttgcacacgaa 375 ||||| ||||| || ||||||||||| ||||| Sbjct: 84376 agagattggtaatagacatagttgcatacgaa 84345
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 9e-05 Identities = 76/92 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 14268023 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 14267964 Query: 344 agagagtggtagtacacatagttgcacacgaa 375 ||||| ||||| || ||||||||||| ||||| Sbjct: 14267963 agagattggtaatagacatagttgcatacgaa 14267932
>dbj|AK099464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023I17, full insert sequence Length = 1114 Score = 56.0 bits (28), Expect = 9e-05 Identities = 76/92 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 809 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 750 Query: 344 agagagtggtagtacacatagttgcacacgaa 375 ||||| ||||| || ||||||||||| ||||| Sbjct: 749 agagattggtaatagacatagttgcatacgaa 718
>dbj|AK062116.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C05, full insert sequence Length = 1164 Score = 56.0 bits (28), Expect = 9e-05 Identities = 76/92 (82%) Strand = Plus / Minus Query: 284 gtcgagaagaggggcacatgcacaaacagagacttgatgccgtgctgctccgcgaaccgg 343 |||| ||||||||| | ||| || |||| ||||||||| ||| |||| || ||||||| Sbjct: 871 gtcgtgaagagggggaaatggacgaacaaagacttgataccgcgctgttctgcgaaccta 812 Query: 344 agagagtggtagtacacatagttgcacacgaa 375 ||||| ||||| || ||||||||||| ||||| Sbjct: 811 agagattggtaatagacatagttgcatacgaa 780
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 aactttacatcttccaggtcaa 189 |||||||||||||||||||||| Sbjct: 8184579 aactttacatcttccaggtcaa 8184558
>dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1047A05 Length = 157517 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 aactttacatcttccaggtcaa 189 |||||||||||||||||||||| Sbjct: 152890 aactttacatcttccaggtcaa 152869
>dbj|AP004648.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_H02 Length = 117860 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 168 aactttacatcttccaggtcaa 189 |||||||||||||||||||||| Sbjct: 17261 aactttacatcttccaggtcaa 17240
>ref|XM_741731.1| Aspergillus fumigatus Af293 endo-1,4-beta-mannosidase (Afu7g01070) partial mRNA Length = 1434 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 cttgatgccgtgctgctccgc 336 ||||||||||||||||||||| Sbjct: 693 cttgatgccgtgctgctccgc 673
>gb|AC007361.2| Homo sapiens BAC clone RP11-144P23 from 7, complete sequence Length = 36465 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 tttttctctccccttaaata 97 |||||||||||||||||||| Sbjct: 1325 tttttctctccccttaaata 1306
>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence Length = 253504 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 cacatgcacaaacagagact 317 |||||||||||||||||||| Sbjct: 186958 cacatgcacaaacagagact 186977
>emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, complete sequence Length = 177221 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 288 agaagaggggcacatgcacaaacagaga 315 |||||||| |||||||||||||||||| Sbjct: 18089 agaagaggttcacatgcacaaacagaga 18116 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,497,578 Number of Sequences: 3902068 Number of extensions: 2497578 Number of successful extensions: 47011 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46892 Number of HSP's gapped (non-prelim): 119 length of query: 384 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 362 effective length of database: 17,147,199,772 effective search space: 6207286317464 effective search space used: 6207286317464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
