>ref|XM_467899.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1735

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 191  acggcggccacgcgcttccct 211
            |||||||||||||||||||||
Sbjct: 1241 acggcggccacgcgcttccct 1221

>gb|AY579411.1| Oryza sativa (japonica cultivar-group) RING/C3HC4/PHD zinc
            finger-like protein mRNA, complete cds
          Length = 1670

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 191  acggcggccacgcgcttccct 211
            |||||||||||||||||||||
Sbjct: 1228 acggcggccacgcgcttccct 1208

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 121     gtccttgtccacatcgaccgccacagagccgac 153
               |||||| |||||||||||| ||||| |||||||
Sbjct: 2854575 gtccttttccacatcgaccaccacatagccgac 2854607

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 191      acggcggccacgcgcttccct 211
                |||||||||||||||||||||
Sbjct: 31987538 acggcggccacgcgcttccct 31987518

>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 191    acggcggccacgcgcttccct 211
              |||||||||||||||||||||
Sbjct: 148539 acggcggccacgcgcttccct 148519

>dbj|AP004159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1175_B01
          Length = 96191

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 191  acggcggccacgcgcttccct 211
            |||||||||||||||||||||
Sbjct: 7913 acggcggccacgcgcttccct 7893

>dbj|AK067456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107I10, full
            insert sequence
          Length = 1735

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 191  acggcggccacgcgcttccct 211
            |||||||||||||||||||||
Sbjct: 1241 acggcggccacgcgcttccct 1221

>gb|AE012099.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 7
           of 460 of the complete genome
          Length = 10647

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 170 ccgccgcgttcgacgaaatg 189
           ||||||||||||||||||||
Sbjct: 485 ccgccgcgttcgacgaaatg 504

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   ccgccgcgttcgacgaaatg 189
             ||||||||||||||||||||
Sbjct: 65332 ccgccgcgttcgacgaaatg 65351

>gb|DQ058601.1| Thermus thermophilus plasmid pTF62, complete sequence
          Length = 10402

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  tcctccctcggagctctccg 264
            ||||||||||||||||||||
Sbjct: 4442 tcctccctcggagctctccg 4423

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 179     tcgacgaaatgcacggcggc 198
               ||||||||||||||||||||
Sbjct: 5053016 tcgacgaaatgcacggcggc 5052997


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,145,042
Number of Sequences: 3902068
Number of extensions: 1145042
Number of successful extensions: 20389
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20279
Number of HSP's gapped (non-prelim): 110
length of query: 271
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 249
effective length of database: 17,147,199,772
effective search space: 4269652743228
effective search space used: 4269652743228
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)