>dbj|AB079636.1| Oryza sativa (japonica cultivar-group) OsHMGB2 mRNA for high
           mobility group box protein 2, complete cds
          Length = 634

 Score =  117 bits (59), Expect = 4e-23
 Identities = 122/144 (84%)
 Strand = Plus / Minus

                                                                       
Query: 350 ctctccttgttctcgaagctggctttggtcttctcatagtcctgcttcttctgtccagcc 409
           |||||||| || |||||| |||| ||||||||||| |||||||||||||| || ||||||
Sbjct: 439 ctctccttcttatcgaagttggccttggtcttctcgtagtcctgcttcttttggccagcc 380

                                                                       
Query: 410 ttctccacataaggtgctttgtcctcatcagacatagatntccacttntnacctgcagcc 469
           || |||||||||||||| || || |  |||||||||| |  |||||| |  |||||||||
Sbjct: 379 ttgtccacataaggtgccttctcttgctcagacatagctcgccacttctcccctgcagcc 320

                                   
Query: 470 ttgctcacgttggcgacattcttg 493
           |||||||||  ||||||| |||||
Sbjct: 319 ttgctcacggcggcgacactcttg 296



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 230 ggatacactatttactcatcgtcgtcttcattatcctcatcgctacc 276
           ||||||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 571 ggatacactatttactcttcatcgtcctcattttcctcatcgctacc 525

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 362      tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 421
                |||||| |||| ||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 27244848 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 27244789

                     
Query: 422      ggtgc 426
                |||||
Sbjct: 27244788 ggtgc 27244784



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 230      ggatacactatttactcatcgtcgtcttcattatcct 266
                ||||||||||||||||| || ||||| ||||| ||||
Sbjct: 27245184 ggatacactatttactcttcatcgtcctcattttcct 27245148



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 35/41 (85%)
 Strand = Plus / Minus

                                                         
Query: 437      tcagacatagatntccacttntnacctgcagccttgctcac 477
                |||||||||| |  |||||| |  |||||||||||||||||
Sbjct: 27244481 tcagacatagctcgccacttctcccctgcagccttgctcac 27244441

>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1725_H08
          Length = 155431

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                          
Query: 362    tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 421
              |||||| |||| ||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 141297 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 141238

                   
Query: 422    ggtgc 426
              |||||
Sbjct: 141237 ggtgc 141233



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 230    ggatacactatttactcatcgtcgtcttcattatcct 266
              ||||||||||||||||| || ||||| ||||| ||||
Sbjct: 141633 ggatacactatttactcttcatcgtcctcattttcct 141597



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 35/41 (85%)
 Strand = Plus / Minus

                                                       
Query: 437    tcagacatagatntccacttntnacctgcagccttgctcac 477
              |||||||||| |  |||||| |  |||||||||||||||||
Sbjct: 140930 tcagacatagctcgccacttctcccctgcagccttgctcac 140890

>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684A08
          Length = 137841

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 362   tcgaagctggctttggtcttctcatagtcctgcttcttctgtccagccttctccacataa 421
             |||||| |||| ||||||||||| |||||||||||||| || |||||||| |||||||||
Sbjct: 95519 tcgaagttggccttggtcttctcgtagtcctgcttcttttggccagccttgtccacataa 95460

                  
Query: 422   ggtgc 426
             |||||
Sbjct: 95459 ggtgc 95455



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 230   ggatacactatttactcatcgtcgtcttcattatcct 266
             ||||||||||||||||| || ||||| ||||| ||||
Sbjct: 95855 ggatacactatttactcttcatcgtcctcattttcct 95819



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 35/41 (85%)
 Strand = Plus / Minus

                                                      
Query: 437   tcagacatagatntccacttntnacctgcagccttgctcac 477
             |||||||||| |  |||||| |  |||||||||||||||||
Sbjct: 95152 tcagacatagctcgccacttctcccctgcagccttgctcac 95112

>gb|AF440222.1| Zea mays cultivar B73 HMG-like nucleosome/chromatin assembly factor
           D (nfd104) mRNA, complete cds
          Length = 795

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 tcatcctgagtcttggccttcttggagctcacactctccttgttctcgaagctggctttg 376
           ||||||| |||||| |||||||| |||||    |||||||| || || ||| | || || 
Sbjct: 441 tcatcctcagtcttagccttctttgagcttgtgctctccttcttatcaaagtttgcctta 382

                                           
Query: 377 gtcttctcatagtcctgcttcttctgtccagc 408
           ||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttctcatagtcctgcttcttctgtccagc 350

>emb|Y08297.1|ZMHMGC1 Z.mays mRNA for HMGc1 protein
          Length = 784

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 317 tcatcctgagtcttggccttcttggagctcacactctccttgttctcgaagctggctttg 376
           ||||||| |||||| |||||||| |||||    |||||||| || || ||| | || || 
Sbjct: 438 tcatcctcagtcttagccttctttgagcttgtgctctccttcttatcaaagtttgcctta 379

                                           
Query: 377 gtcttctcatagtcctgcttcttctgtccagc 408
           ||||||||||||||||||||||||||||||||
Sbjct: 378 gtcttctcatagtcctgcttcttctgtccagc 347

>emb|AJ131374.1|ZMA131374 Zea mays hmgc1 gene, exons 1-7
          Length = 2929

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 377  gtcttctcatagtcctgcttcttctgtccagc 408
            ||||||||||||||||||||||||||||||||
Sbjct: 2102 gtcttctcatagtcctgcttcttctgtccagc 2071



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 38/43 (88%), Gaps = 2/43 (4%)
 Strand = Plus / Minus

                                                       
Query: 212  atttgctacctcgtg--cttggatacactatttactcatcgtc 252
            |||||||||||||||  |||||| ||| | |||||||||||||
Sbjct: 2455 atttgctacctcgtgaccttggagacagtgtttactcatcgtc 2413

>gb|BT016444.1| Zea mays clone Contig277 mRNA sequence
          Length = 1158

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 377 gtcttctcatagtcctgcttcttctgtccagc 408
           |||||||||||||||||||||||||| |||||
Sbjct: 366 gtcttctcatagtcctgcttcttctgcccagc 335

>emb|Y08298.1|ZMHMGC2 Z.mays mRNA for HMGc2 protein
          Length = 828

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                           
Query: 377 gtcttctcatagtcctgcttcttctgtccagc 408
           |||||||||||||||||||||||||| |||||
Sbjct: 293 gtcttctcatagtcctgcttcttctgcccagc 262

>ref|XM_460929.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F14135g)
           partial mRNA
          Length = 1953

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 245 tcatcgtcgtcttcattatcctcatc 270
           ||||||||||||||||||| ||||||
Sbjct: 167 tcatcgtcgtcttcattattctcatc 142

>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 245     tcatcgtcgtcttcattatcctcatc 270
               ||||||||||||||||||| ||||||
Sbjct: 1131943 tcatcgtcgtcttcattattctcatc 1131918

>dbj|AP002832.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-651F18, complete
             sequence
          Length = 117898

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 201   cccaactcccaatttgctacct 222
             ||||||||||||||||||||||
Sbjct: 29673 cccaactcccaatttgctacct 29694

>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence
          Length = 209081

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 373   tttggtcttctcatagtcctg 393
             |||||||||||||||||||||
Sbjct: 52318 tttggtcttctcatagtcctg 52298

>gb|AC122833.2| Mus musculus BAC clone RP23-181J12 from 15, complete sequence
          Length = 200339

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 373   tttggtcttctcatagtcctg 393
             |||||||||||||||||||||
Sbjct: 95345 tttggtcttctcatagtcctg 95325

>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 309     cctcctcatcatcctgagtct 329
               |||||||||||||||||||||
Sbjct: 2969609 cctcctcatcatcctgagtct 2969629

>emb|AL592214.14| Mouse DNA sequence from clone RP23-212I24 on chromosome 1, complete
              sequence
          Length = 194720

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 316    atcatcctgagtcttggccttcttg 340
              ||||||||||||||||| |||||||
Sbjct: 187116 atcatcctgagtcttggtcttcttg 187140

>ref|XM_365427.1| Magnaporthe grisea 70-15 hypothetical protein (MG02129.4) partial
            mRNA
          Length = 2598

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 247  atcgtcgtcttcattatcctcatc 270
            |||||||||||||| |||||||||
Sbjct: 1293 atcgtcgtcttcatcatcctcatc 1270

>gb|AY282923.1| Strongylocentrotus purpuratus polycystic kidney disease protein 2
            (PKD2) mRNA, complete cds
          Length = 3539

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 244  ctcatcgtcgtcttcattatcctcatcg 271
            |||||||||||| |||| ||||||||||
Sbjct: 2495 ctcatcgtcgtcatcatcatcctcatcg 2468

>ref|XM_751756.1| Ustilago maydis 521 hypothetical protein (UM00702.1) partial mRNA
          Length = 5868

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 245  tcatcgtcgtcttcattatcctcatcgc 272
            |||||||||||||||| ||| |||||||
Sbjct: 1544 tcatcgtcgtcttcatcatcatcatcgc 1517

>gb|AC115117.5| Mus musculus BAC clone RP23-76J12 from chromosome 18, complete sequence
          Length = 197626

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     gcaacttctcaaaccatgag 90
              ||||||||||||||||||||
Sbjct: 122483 gcaacttctcaaaccatgag 122502

>emb|AJ890015.1| Triticum aestivum partial mRNA for putative high mobility group
           protein (hmg1 gene), cultivar Wyuna, from endosperm
           tissue
          Length = 638

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 gtcttggccttcttggagct 345
           ||||||||||||||||||||
Sbjct: 296 gtcttggccttcttggagct 277

>ref|XM_785429.1| PREDICTED: Strongylocentrotus purpuratus similar to CG2839-PA
           (LOC585610), mRNA
          Length = 3282

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 251 tcgtcttcattatcctcatc 270
           ||||||||||||||||||||
Sbjct: 827 tcgtcttcattatcctcatc 808

>ref|XM_781060.1| PREDICTED: Strongylocentrotus purpuratus similar to neuralized,
           possibly N-myristoylated (XR998) (LOC581036), mRNA
          Length = 897

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 244 ctcatcgtcgtcttcattat 263
           ||||||||||||||||||||
Sbjct: 654 ctcatcgtcgtcttcattat 673

>gb|AY082396.1| Zea mays knotted1-interacting protein (kip) mRNA, complete cds
          Length = 1401

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 308  gcctcctcatcatcctgagtcttg 331
            ||||||||||| ||||||||||||
Sbjct: 1193 gcctcctcatcctcctgagtcttg 1216

>ref|NM_135461.2| Drosophila melanogaster CG4364-RA (CG4364), mRNA
          Length = 2123

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  tcatcgtcgtcttcattatc 264
            ||||||||||||||||||||
Sbjct: 1676 tcatcgtcgtcttcattatc 1657

>gb|AY069545.1| Drosophila melanogaster LD27336 full length cDNA
          Length = 2141

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  tcatcgtcgtcttcattatc 264
            ||||||||||||||||||||
Sbjct: 1676 tcatcgtcgtcttcattatc 1657

>gb|AC182755.1| Gasterosteus aculeatus clone VMRC28-49K03, complete sequence
          Length = 136793

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    agatagcaggatagcaaact 183
              ||||||||||||||||||||
Sbjct: 118683 agatagcaggatagcaaact 118664

>gb|AC018608.9|AC018608 Homo sapiens chromosome 8, clone RP11-403P13, complete sequence
          Length = 200863

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 246   catcgtcgtcttcattatcctcat 269
             ||||||| ||||||||||||||||
Sbjct: 85923 catcgtcatcttcattatcctcat 85946

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 243      actcatcgtcgtcttcattatcctcatc 270
                ||||||||||||| |||| |||||||||
Sbjct: 26739413 actcatcgtcgtcgtcatcatcctcatc 26739440

>gb|AC007291.24|AC007291 Drosophila melanogaster, chromosome 2L, region 30B-, BAC clone BACR02I05,
              complete sequence
          Length = 176075

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    tcatcgtcgtcttcattatc 264
              ||||||||||||||||||||
Sbjct: 110897 tcatcgtcgtcttcattatc 110878

>ref|NM_214662.1| Strongylocentrotus purpuratus polycystic kidney disease protein 2
            (pkd2), mRNA
          Length = 3539

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 244  ctcatcgtcgtcttcattatcctcatcg 271
            |||||||||||| |||| ||||||||||
Sbjct: 2495 ctcatcgtcgtcatcatcatcctcatcg 2468

>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0694A04
          Length = 141476

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 243   actcatcgtcgtcttcattatcctcatc 270
             ||||||||||||| |||| |||||||||
Sbjct: 86505 actcatcgtcgtcgtcatcatcctcatc 86532

>gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35 of 83 of the
           complete sequence
          Length = 264919

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcatcgtcgtcttcattatc 264
           ||||||||||||||||||||
Sbjct: 506 tcatcgtcgtcttcattatc 525

>gb|AC167686.2| Daphnia pulex clone JGIAZSN-5K3, complete sequence
          Length = 36132

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 281   tcttcgacctcagatttgga 300
             ||||||||||||||||||||
Sbjct: 12661 tcttcgacctcagatttgga 12642

>emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chromosome 4, complete
             sequence
          Length = 123244

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    gctctctctctgctaataca 63
             ||||||||||||||||||||
Sbjct: 78063 gctctctctctgctaataca 78082


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,424,403
Number of Sequences: 3902068
Number of extensions: 5424403
Number of successful extensions: 108958
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108808
Number of HSP's gapped (non-prelim): 149
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)