ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal21i22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monode... 1116 0.0
2gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full... 642 0.0
3gb|AY106646.1| Zea mays PCO091252 mRNA sequence 117 4e-23
4ref|XM_467388.1| Oryza sativa (japonica cultivar-group), mRNA 96 2e-16
5gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence 96 2e-16
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
7dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
8dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic D... 96 2e-16
9dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
10dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
11ref|XM_467387.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
12gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reduct... 52 0.002
13gb|DQ411856.1| Lactobacillus casei ATCC 334 hypothetical protein... 42 2.0
14gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, comp... 42 2.0
15gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, compl... 42 2.0
16gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, comp... 40 8.1
17gb|AY621509.1| Oikopleura dioica envDll2-01 (envDll2-01), envDll... 40 8.1
18gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Canc... 40 8.1
19gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Can... 40 8.1
20gb|AC007834.40| Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cance... 40 8.1
21gb|DQ159870.1| Physcomitrella patens monodehydroascorbate reduct... 40 8.1
22gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromo... 40 8.1
23gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 8.1
24gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, comp... 40 8.1
25gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chrom... 40 8.1
26dbj|AK174018.1| Ciona intestinalis cDNA, clone:ciad018d09, full ... 40 8.1
27gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, co... 40 8.1
28dbj|AK116986.1| Ciona intestinalis cDNA, clone:cits012m05, full ... 40 8.1 
>emb|AJ345035.1|HVU345035 Hordeum vulgare partial mRNA for monodehydroascorbate reductase
          Length = 1250

 Score = 1116 bits (563), Expect = 0.0
 Identities = 581/587 (98%)
 Strand = Plus / Minus

                                                                        
Query: 8    aatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgtaca 67
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 aatatattatgagatttctatacttgtttacacatgaggcaacgattacactttcgtaca 1170

                                                                        
Query: 68   ggtttgtacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttcctt 127
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 ggtttatacagggtttcctccaagtaactgtatgtaaacaatagatcttcctccttcctt 1110

                                                                        
Query: 128  ccagcagtttatcccagccgcccgcaaaccgatcccgggtttcaccacctgcggcgcttc 187
            ||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct: 1109 ccatcagtttatcccagccgcccgcgaaccgttccggggtttcaccacctgcggcgcttc 1050

                                                                        
Query: 188  ctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgttgca 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 ctgccgtaccaataaccgaacgcggagatcgacactgccgcaacgacccctgccgttgca 990

                                                                        
Query: 248  taccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttcttg 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989  taccatacgaaggtgggcttttcgccgagggtaaccccgctgtcaggcacctctttcttg 930

                                                                        
Query: 308  ctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggccttg 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929  ctttcctggatggcaaacgctaggccttgtctttcaagttcagacatgtccgaggccttg 870

                                                                        
Query: 368  gttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccaccttccagg 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869  gttttacgccggacaaccaccgacaatgcctcgtagtcgtcccggttcccaccttccagg 810

                                                                        
Query: 428  aacgcgcccgtgatctggcccttactgacccagtatgcgccgaacctcgggctgttgctt 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809  aacgcgcccgtgatctggcccttactgacccagtatgcgccgaacctcgggctgttgctt 750

                                                                        
Query: 488  gtgaagtcgccgtagtgaattacttctccgacattgtccccgtagaactgccaggacagt 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749  gtgaagtcgccgtagtgaattacttctccgacattgtccccgtagaactgccaggacagt 690

                                                           
Query: 548  gtgaagactcttgagtagaagaatggcaggtaatcgacgtccctggt 594
            |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 689  gtgaagactcttgagtagaagaatggtaggtaatcgacgtccctggt 643
to top
>gb|BT009417.1| Triticum aestivum clone wlmk1.pk0007.f9:fis, full insert mRNA
            sequence
          Length = 1821

 Score =  642 bits (324), Expect = 0.0
 Identities = 399/424 (94%)
 Strand = Plus / Minus

                                                                        
Query: 169  tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgacactgccgc 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 1583 tcaccacctgcggcgcttcctgccgtaccaataaccgaacgcggagatcgagacggccgc 1524

                                                                        
Query: 229  aacgacccctgccgttgcataccatacgaaggtgggcttttcgccgagggtaaccccgct 288
            ||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct: 1523 aacaacccccgccgtcgcgtaccacacgaaggtgggcttctcgccgagggtgaccccgct 1464

                                                                        
Query: 289  gtcaggcacctctttcttgctttcctggatggcaaacgctaggccttgtctttcaagttc 348
            ||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1463 gtcaggcacgtctttcttgctttcctggatggcaaatgccaggccttgtctttcaagttc 1404

                                                                        
Query: 349  agacatgtccgaggccttggttttacgccggacaaccaccgacaatgcctcgtagtcgtc 408
            ||||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct: 1403 agacatgtccgagaccttggttttacgccagacaaccaccgataacgcctcgtagtcgtc 1344

                                                                        
Query: 409  ccggttcccaccttccaggaacgcgcccgtgatctggcccttactgacccagtatgcgcc 468
            ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1343 ccggtccccgccttccaggaacgcgcccgtgatctggcccttgctgacccagtatgcgcc 1284

                                                                        
Query: 469  gaacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtcccc 528
            |||||  ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1283 gaaccgagggctgttgctcgtgaagtcgccgtagtgaattacttctccgacattgtctcc 1224

                                                                        
Query: 529  gtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtc 588
             ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1223 atagaactgccaggacagtgtgaagactctggagtagaagaatggcaggtaatcgacgtc 1164

                
Query: 589  cctg 592
            ||||
Sbjct: 1163 cctg 1160



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 47/52 (90%), Gaps = 2/52 (3%)
 Strand = Plus / Minus

                                                                
Query: 22   tttctatacttgtttacac-atgaggcaacgattacactttcgtacaggttt 72
            ||||||||||||||||||  ||||| |||  |||||||||||||||||||||
Sbjct: 1691 tttctatacttgtttacagtatgagacaaa-attacactttcgtacaggttt 1641
to top
>gb|AY106646.1| Zea mays PCO091252 mRNA sequence
          Length = 1867

 Score =  117 bits (59), Expect = 4e-23
 Identities = 119/139 (85%)
 Strand = Plus / Minus

                                                                        
Query: 453  tgacccagtatgcgccgaacctcgggctgttgcttgtgaagtcgccgtagtgaattactt 512
            ||||||| ||||| ||||||||||| ||| ||||||||||||| ||  |||| |  ||||
Sbjct: 1273 tgacccaatatgcaccgaacctcggactgctgcttgtgaagtctccaaagtggaccactt 1214

                                                                        
Query: 513  ctccgacattgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatg 572
            | |||||||| ||||| ||||| ||||||||||  ||||| ||||| ||||||||||| |
Sbjct: 1213 ccccgacattatccccatagaattgccaggacaacgtgaacactctggagtagaagaacg 1154

                               
Query: 573  gcaggtaatcgacgtccct 591
            |||||||||||| ||||||
Sbjct: 1153 gcaggtaatcgatgtccct 1135



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 169  tcaccacctgcggcgcttcctgccgtaccaata 201
            |||||||||||||||||||||||| ||||||||
Sbjct: 1557 tcaccacctgcggcgcttcctgccataccaata 1525
to top
>ref|XM_467388.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1822

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                        
Query: 470  aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 529
            ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 1306 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 1247

                                                                        
Query: 530  tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 589
            ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 1246 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 1187



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 167  tttcaccacctgcggcgcttcctgccgtaccaataacc 204
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1609 tttcaccacctacggcgtttcctgccgtaccaataacc 1572
to top
>gb|AF480496.1| Oryza sativa clone BAC 49D11, complete sequence
          Length = 158050

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                          
Query: 470    aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 529
              ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 113655 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 113596

                                                                          
Query: 530    tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 589
              ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 113595 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 113536



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                          
Query: 521    ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 580
              ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 116966 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 116907

                  
Query: 581    tcga 584
              ||||
Sbjct: 116906 tcga 116903



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 167    tttcaccacctgcggcgcttcctgccgtaccaataacc 204
              ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 113958 tttcaccacctacggcgtttcctgccgtaccaataacc 113921
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                            
Query: 470      aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 529
                ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 29248976 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 29249035

                                                                            
Query: 530      tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 589
                ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 29249036 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 29249095



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                            
Query: 521      ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 580
                ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 29245665 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 29245724

                    
Query: 581      tcga 584
                ||||
Sbjct: 29245725 tcga 29245728



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                      
Query: 167      tttcaccacctgcggcgcttcctgccgtaccaataacc 204
                ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 29248673 tttcaccacctacggcgtttcctgccgtaccaataacc 29248710
to top
>dbj|AP005844.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0060O16
          Length = 164373

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                         
Query: 470   aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 529
             ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 46321 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 46380

                                                                         
Query: 530   tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 589
             ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 46381 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 46440



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                         
Query: 521   ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 580
             ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 43010 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 43069

                 
Query: 581   tcga 584
             ||||
Sbjct: 43070 tcga 43073



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 167   tttcaccacctgcggcgcttcctgccgtaccaataacc 204
             ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 46018 tttcaccacctacggcgtttcctgccgtaccaataacc 46055
to top
>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0680A05
          Length = 168092

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Plus

                                                                          
Query: 470    aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 529
              ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 138944 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 139003

                                                                          
Query: 530    tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 589
              ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 139004 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 139063



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                          
Query: 521    ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 580
              ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 135633 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 135692

                  
Query: 581    tcga 584
              ||||
Sbjct: 135693 tcga 135696



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                    
Query: 167    tttcaccacctgcggcgcttcctgccgtaccaataacc 204
              ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 138641 tttcaccacctacggcgtttcctgccgtaccaataacc 138678
to top
>dbj|AK065585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M23, full
            insert sequence
          Length = 1821

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                        
Query: 470  aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 529
            ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 1305 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 1246

                                                                        
Query: 530  tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 589
            ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 1245 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 1186



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 167  tttcaccacctgcggcgcttcctgccgtaccaataacc 204
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1608 tttcaccacctacggcgtttcctgccgtaccaataacc 1571
to top
>dbj|AK062096.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-H12, full
           insert sequence
          Length = 1246

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 102/120 (85%)
 Strand = Plus / Minus

                                                                       
Query: 470 aacctcgggctgttgcttgtgaagtcgccgtagtgaattacttctccgacattgtccccg 529
           ||||| |||||| || |||||||||| ||  ||||||  |||||||||  ||||| ||| 
Sbjct: 748 aaccttgggctgctgtttgtgaagtctccaaagtgaaccacttctccggtattgttccca 689

                                                                       
Query: 530 tagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaatcgacgtcc 589
           ||||| |||||||| | ||||||||| || ||||||||||||||||||||||||| ||||
Sbjct: 688 tagaattgccaggataatgtgaagaccctggagtagaagaatggcaggtaatcgatgtcc 629



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                  
Query: 167  tttcaccacctgcggcgcttcctgccgtaccaataacc 204
            ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1051 tttcaccacctacggcgtttcctgccgtaccaataacc 1014
to top
>ref|XM_467387.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                        
Query: 521  ttgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcaggtaa 580
            ||||| |||||||||||||| ||||| | |||||| || |||||||||||||||||||| 
Sbjct: 1082 ttgtcgccgtagaactgccacgacagcgagaagaccctggagtagaagaatggcaggtag 1023

                
Query: 581  tcga 584
            ||||
Sbjct: 1022 tcga 1019
to top
>gb|DQ159869.1| Physcomitrella patens monodehydroascorbate reductase I (Mdhar1) gene,
            promoter region and complete cds
          Length = 6026

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 56/66 (84%)
 Strand = Plus / Minus

                                                                        
Query: 518  acattgtccccgtagaactgccaggacagtgtgaagactcttgagtagaagaatggcagg 577
            |||||||| |||||||||||||| |||||  |||||   |  |||||||||||||| |||
Sbjct: 5547 acattgtcgccgtagaactgccacgacagattgaaggagcgggagtagaagaatgggagg 5488

                  
Query: 578  taatcg 583
            ||||||
Sbjct: 5487 taatcg 5482
to top
>gb|DQ411856.1| Lactobacillus casei ATCC 334 hypothetical protein (Lcas001), putative
             transposase (Lcas002), and putative transposase (Lcas003)
             genes, complete cds; and Lactobacillus casei phage Lca1,
             complete sequence
          Length = 52470

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 481   gttgcttgtgaagtcgccgta 501
             |||||||||||||||||||||
Sbjct: 10947 gttgcttgtgaagtcgccgta 10967
to top
>gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, complete sequence
          Length = 98328

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    aactgtatgtaaacaatagat 113
             |||||||||||||||||||||
Sbjct: 76165 aactgtatgtaaacaatagat 76145
to top
>gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, complete sequence
          Length = 104475

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    aactgtatgtaaacaatagat 113
             |||||||||||||||||||||
Sbjct: 28447 aactgtatgtaaacaatagat 28427
to top
>gb|AC093339.17| Mus musculus chromosome 19, clone RP23-5G6, complete sequence
          Length = 218747

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tcttcctccttccttccagc 132
             ||||||||||||||||||||
Sbjct: 16071 tcttcctccttccttccagc 16090
to top
>gb|AY621509.1| Oikopleura dioica envDll2-01 (envDll2-01), envDll2-02 (envDll2-02),
            envDll2-03 (envDll2-03), envDll2-04 (envDll2-04),
            envDll2-05 (envDll2-05), envDll2-06 (envDll2-06), and
            envDll2-07 (envDll2-07) genes, complete cds
          Length = 26938

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  ctttcttgctttcctggatg 319
            ||||||||||||||||||||
Sbjct: 5860 ctttcttgctttcctggatg 5841
to top
>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 224115

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    gatcttcctccttccttcca 130
              ||||||||||||||||||||
Sbjct: 115312 gatcttcctccttccttcca 115331
to top
>gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 156422

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   atagatcttcctccttcctt 127
             ||||||||||||||||||||
Sbjct: 91398 atagatcttcctccttcctt 91379
to top
>gb|AC007834.40| Homo sapiens 12 BAC RP11-7G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 210578

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 122    ttccttccagcagtttatcc 141
              ||||||||||||||||||||
Sbjct: 169088 ttccttccagcagtttatcc 169107
to top
>gb|DQ159870.1| Physcomitrella patens monodehydroascorbate reductase II (Mdhar2)
            gene, promoter region and complete cds
          Length = 6318

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 560  gagtagaagaatggcaggtaatcg 583
            ||||||||||| ||||||||||||
Sbjct: 5994 gagtagaagaaaggcaggtaatcg 5971
to top
>gb|AC155320.2| Pan troglodytes BAC clone CH251-421K1 from chromosome unknown, complete
              sequence
          Length = 185966

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ttctatacttgtttacacat 42
              ||||||||||||||||||||
Sbjct: 105485 ttctatacttgtttacacat 105504
to top
>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    agatcttcctccttccttcc 129
              ||||||||||||||||||||
Sbjct: 114459 agatcttcctccttccttcc 114440
to top
>gb|AC009161.14| Homo sapiens chromosome 16 clone RP11-75D3, complete sequence
          Length = 180222

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ttctatacttgtttacacat 42
             ||||||||||||||||||||
Sbjct: 34689 ttctatacttgtttacacat 34708
to top
>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete
              sequence
          Length = 198653

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     gagatttctatacttgttta 37
              ||||||||||||||||||||
Sbjct: 184406 gagatttctatacttgttta 184425
to top
>dbj|AK174018.1| Ciona intestinalis cDNA, clone:ciad018d09, full insert sequence
          Length = 3083

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 245  gcataccatacgaaggtggg 264
            ||||||||||||||||||||
Sbjct: 1557 gcataccatacgaaggtggg 1538
to top
>gb|AC114578.14| Mus musculus chromosome 19, clone RP23-162C4, complete sequence
          Length = 201229

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   tcttcctccttccttccagc 132
             ||||||||||||||||||||
Sbjct: 14017 tcttcctccttccttccagc 13998
to top
>dbj|AK116986.1| Ciona intestinalis cDNA, clone:cits012m05, full insert sequence
          Length = 1634

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  gcataccatacgaaggtggg 264
            ||||||||||||||||||||
Sbjct: 1118 gcataccatacgaaggtggg 1137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,240,476
Number of Sequences: 3902068
Number of extensions: 5240476
Number of successful extensions: 91166
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91097
Number of HSP's gapped (non-prelim): 67
length of query: 594
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 571
effective length of database: 17,143,297,704
effective search space: 9788822988984
effective search space used: 9788822988984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top