ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal21i16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110526.1| Zea mays CL14746_1 mRNA sequence 198 1e-47
2ref|XM_477181.1| Oryza sativa (japonica cultivar-group), mRNA 188 1e-44
3dbj|AK069953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 188 1e-44
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
5dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic D... 113 7e-22
6gb|AY111768.1| Zea mays CL4147_1 mRNA sequence 62 2e-06
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.034
8dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.034
9dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.034
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.52
11emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4,... 44 0.52
12emb|AL137190.5|CNS01DWG Human chromosome 14 DNA sequence BAC R-2... 44 0.52
13emb|AL645994.7| Mouse DNA sequence from clone RP23-104F14 on chr... 42 2.1
14dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
15gb|AC093873.2| Homo sapiens BAC clone RP11-615B17 from 2, comple... 42 2.1
16dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17emb|CR391974.8| Zebrafish DNA sequence from clone CH211-59E10 in... 42 2.1
18emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on ch... 42 2.1
19ref|XM_518446.1| PREDICTED: Pan troglodytes similar to dynein, a... 40 8.2
20gb|AC154398.6| Mus musculus chromosome 1, clone RP24-372I12, com... 40 8.2
21gb|AC134837.3| Mus musculus BAC clone RP24-338L20 from chromosom... 40 8.2
22gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome... 40 8.2
23gb|AF527622.1| Homo sapiens axonemal dynein heavy chain 8 isofor... 40 8.2
24gb|AF527621.1| Homo sapiens axonemal dynein heavy chain 8 isofor... 40 8.2
25gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete... 40 8.2
26gb|AC117550.8| Mus musculus chromosome 1, clone RP24-571N3, comp... 40 8.2
27emb|AL391415.12| Human DNA sequence from clone RP3-503A6 on chro... 40 8.2
28gb|AC023595.19| Homo sapiens 12 BAC RP11-553N19 (Roswell Park Ca... 40 8.2
29gb|AF414247.1| Gadus morhua clone UB6-N2S6-Ca MHC class Ia antig... 40 8.2
30gb|CP000249.1| Frankia sp. CcI3, complete genome 40 8.2
31emb|BX120001.10| Zebrafish DNA sequence from clone CH211-217J8 i... 40 8.2
32dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
33gb|AC018630.40| Homo sapiens 12 BAC RP11-673D15 (Roswell Park Ca... 40 8.2
34emb|AL840630.16| Zebrafish DNA sequence from clone CH211-279L11 ... 40 8.2
35dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
36dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
37dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
38gb|AC171062.5| Rhesus Macaque BAC CH250-364H15 (Children's Hosp... 40 8.2
39emb|AL935209.14| Zebrafish DNA sequence from clone DKEY-61N16, c... 40 8.2
40gb|AC003671.1|F17O7 Arabidopsis thaliana chromosome 1 BAC F17O7 ... 40 8.2 
>gb|AY110526.1| Zea mays CL14746_1 mRNA sequence
          Length = 973

 Score =  198 bits (100), Expect = 1e-47
 Identities = 355/440 (80%)
 Strand = Plus / Plus

                                                                       
Query: 163 tccctgtgaacctcatccaggatcacaacaaggctcgcgatgaacacgtagtcgacgtgc 222
           ||||| |||| ||||||||| |||||||||||    |||| |||||||||||| ||||||
Sbjct: 289 tccctatgaatctcatccagtatcacaacaagagcagcgacgaacacgtagtcaacgtgc 348

                                                                       
Query: 223 gggaacacggtgacactgaacgtgtccctcccgagcagcacattcgaaaccgtcagctta 282
           |||||||| ||||| |  ||||||||||| || ||||||||||| |  || || | ||  
Sbjct: 349 gggaacacagtgacgccaaacgtgtcccttccaagcagcacattggtgacggtaaactgg 408

                                                                       
Query: 283 cggctcatttgagctaccatgttgttggagtcgccaaggtagaagacgcaggatctgtcg 342
           ||| |||| || || | |||| || |||||  ||| ||||||||| |||| || || |||
Sbjct: 409 cggttcatctgggcgatcatgctgctggagctgccgaggtagaaggcgcacgacctctcg 468

                                                                       
Query: 343 aagtagctgcccttgatcttgaagtcacagacttgctgcgcggtgttcccggccaagaag 402
           |||||||||||||||||||||||||| || || ||||||||||||||   ||||| ||||
Sbjct: 469 aagtagctgcccttgatcttgaagtcgcacacctgctgcgcggtgttggaggccaggaag 528

                                                                       
Query: 403 acatccatctcggtcttgaattggatcagcgaagttgtcttcacggtgaagagcaggtcg 462
           |  |||||||| ||||| |  ||||  | ||| | | ||||| |||||||||||||||||
Sbjct: 529 atgtccatctccgtcttcagctggaatatcgaggatttcttcgcggtgaagagcaggtcg 588

                                                                       
Query: 463 cctgcgttcgtgctgtcccctctgaacacttgccaacggtggtgcatactgaacgccttt 522
           |   |||||| |||||||||||||||||| | ||| | || |||||| |||||  |||| 
Sbjct: 589 ctctcgttcgagctgtcccctctgaacacctcccatctgttgtgcatgctgaataccttc 648

                                                                       
Query: 523 tcttgcatggtgaggaggggcatcccggcgccgtcgaggatggtgcggcggctccggatg 582
           ||  |||||||||||| ||||   |||||| ||||||||| |  |||||||   ||||| 
Sbjct: 649 tccagcatggtgaggatgggctggccggcggcgtcgaggaggacgcggcggtggcggata 708

                               
Query: 583 ctgaagatggcgcccttgac 602
           ||||||| ||||||||||||
Sbjct: 709 ctgaagacggcgcccttgac 728
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>ref|XM_477181.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 971

 Score =  188 bits (95), Expect = 1e-44
 Identities = 218/259 (84%)
 Strand = Plus / Minus

                                                                       
Query: 161 tgtccctgtgaacctcatccaggatcacaacaaggctcgcgatgaacacgtagtcgacgt 220
           ||||||||||||| |||||||| ||| |||||||   ||||||||||||||||||||| |
Sbjct: 701 tgtccctgtgaacatcatccagaatcgcaacaagagccgcgatgaacacgtagtcgactt 642

                                                                       
Query: 221 gcgggaacacggtgacactgaacgtgtccctcccgagcagcacattcgaaaccgtcagct 280
           |||||||||||||||  |||||   ||||||||| |||| |||| | | | | ||  |||
Sbjct: 641 gcgggaacacggtgatgctgaatacgtccctccccagcaccacacttgcagcggtgtgct 582

                                                                       
Query: 281 tacggctcatttgagctaccatgttgttggagtcgccaaggtagaagacgcaggatctgt 340
           ||||| ||||||||||||  ||  |||| || | ||||||||||||| |  | |||||||
Sbjct: 581 tacggttcatttgagctatgattgtgtttgatttgccaaggtagaaggcagatgatctgt 522

                                                                       
Query: 341 cgaagtagctgcccttgatcttgaagtcacagacttgctgcgcggtgttcccggccaaga 400
           |  |||||||||||||||||||||| || |||||||||| |||||| |||||||||||||
Sbjct: 521 cacagtagctgcccttgatcttgaaatcgcagacttgctccgcggtattcccggccaaga 462

                              
Query: 401 agacatccatctcggtctt 419
           ||| ||||||||| |||||
Sbjct: 461 agatatccatctccgtctt 443
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>dbj|AK069953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037H24, full
           insert sequence
          Length = 970

 Score =  188 bits (95), Expect = 1e-44
 Identities = 218/259 (84%)
 Strand = Plus / Minus

                                                                       
Query: 161 tgtccctgtgaacctcatccaggatcacaacaaggctcgcgatgaacacgtagtcgacgt 220
           ||||||||||||| |||||||| ||| |||||||   ||||||||||||||||||||| |
Sbjct: 700 tgtccctgtgaacatcatccagaatcgcaacaagagccgcgatgaacacgtagtcgactt 641

                                                                       
Query: 221 gcgggaacacggtgacactgaacgtgtccctcccgagcagcacattcgaaaccgtcagct 280
           |||||||||||||||  |||||   ||||||||| |||| |||| | | | | ||  |||
Sbjct: 640 gcgggaacacggtgatgctgaatacgtccctccccagcaccacacttgcagcggtgtgct 581

                                                                       
Query: 281 tacggctcatttgagctaccatgttgttggagtcgccaaggtagaagacgcaggatctgt 340
           ||||| ||||||||||||  ||  |||| || | ||||||||||||| |  | |||||||
Sbjct: 580 tacggttcatttgagctatgattgtgtttgatttgccaaggtagaaggcagatgatctgt 521

                                                                       
Query: 341 cgaagtagctgcccttgatcttgaagtcacagacttgctgcgcggtgttcccggccaaga 400
           |  |||||||||||||||||||||| || |||||||||| |||||| |||||||||||||
Sbjct: 520 cacagtagctgcccttgatcttgaaatcgcagacttgctccgcggtattcccggccaaga 461

                              
Query: 401 agacatccatctcggtctt 419
           ||| ||||||||| |||||
Sbjct: 460 agatatccatctccgtctt 442
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  113 bits (57), Expect = 7e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                           
Query: 315     gccaaggtagaagacgcaggatctgtcgaagtagctgcccttgatcttgaagtcacagac 374
               ||||||||||||| |  | ||||||||  |||||||||||||||||||||| || |||||
Sbjct: 7305695 gccaaggtagaaggcagatgatctgtcacagtagctgcccttgatcttgaaatcgcagac 7305754

                                                            
Query: 375     ttgctgcgcggtgttcccggccaagaagacatccatctcggtctt 419
               ||||| |||||| |||||||||||||||| ||||||||| |||||
Sbjct: 7305755 ttgctccgcggtattcccggccaagaagatatccatctccgtctt 7305799



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                           
Query: 161     tgtccctgtgaacctcatccaggatcacaacaaggctcgcgatgaacacgtagtcgacgt 220
               ||||||||||||| |||||||| ||| |||||||   ||||||||||||||||||||| |
Sbjct: 7305452 tgtccctgtgaacatcatccagaatcgcaacaagagccgcgatgaacacgtagtcgactt 7305511

                                                           
Query: 221     gcgggaacacggtgacactgaacgtgtccctcccgagcagcaca 264
               |||||||||||||||  |||||   ||||||||| |||| ||||
Sbjct: 7305512 gcgggaacacggtgatgctgaatacgtccctccccagcaccaca 7305555



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                   
Query: 208     acgtagtcgacgtgcgggaacacggtgacactgaac 243
               ||||||||||| |||||||||||||| |||||||||
Sbjct: 7303953 acgtagtcgacatgcgggaacacggtcacactgaac 7303988



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 342     gaagtagctgcccttgatcttgaa 365
               ||||||||||||||||||||||||
Sbjct: 5996576 gaagtagctgcccttgatcttgaa 5996553
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>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0086N05
          Length = 163670

 Score =  113 bits (57), Expect = 7e-22
 Identities = 93/105 (88%)
 Strand = Plus / Plus

                                                                         
Query: 315   gccaaggtagaagacgcaggatctgtcgaagtagctgcccttgatcttgaagtcacagac 374
             ||||||||||||| |  | ||||||||  |||||||||||||||||||||| || |||||
Sbjct: 32376 gccaaggtagaaggcagatgatctgtcacagtagctgcccttgatcttgaaatcgcagac 32435

                                                          
Query: 375   ttgctgcgcggtgttcccggccaagaagacatccatctcggtctt 419
             ||||| |||||| |||||||||||||||| ||||||||| |||||
Sbjct: 32436 ttgctccgcggtattcccggccaagaagatatccatctccgtctt 32480



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 90/104 (86%)
 Strand = Plus / Plus

                                                                         
Query: 161   tgtccctgtgaacctcatccaggatcacaacaaggctcgcgatgaacacgtagtcgacgt 220
             ||||||||||||| |||||||| ||| |||||||   ||||||||||||||||||||| |
Sbjct: 32133 tgtccctgtgaacatcatccagaatcgcaacaagagccgcgatgaacacgtagtcgactt 32192

                                                         
Query: 221   gcgggaacacggtgacactgaacgtgtccctcccgagcagcaca 264
             |||||||||||||||  |||||   ||||||||| |||| ||||
Sbjct: 32193 gcgggaacacggtgatgctgaatacgtccctccccagcaccaca 32236



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 208   acgtagtcgacgtgcgggaacacggtgacactgaac 243
             ||||||||||| |||||||||||||| |||||||||
Sbjct: 30634 acgtagtcgacatgcgggaacacggtcacactgaac 30669
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>gb|AY111768.1| Zea mays CL4147_1 mRNA sequence
          Length = 735

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 201 gatgaacacgtagtcgacgtgcgggaacacggtga 235
           |||||||||||||||||||| ||||||||||||||
Sbjct: 140 gatgaacacgtagtcgacgttcgggaacacggtga 174



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 446 cggtgaagagcaggtcgcctgcgttcgtgctgtcccctctg 486
           ||||||||||||||||||  |   |||||||||||||||||
Sbjct: 394 cggtgaagagcaggtcgctcgatctcgtgctgtcccctctg 434
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 342      gaagtagctgcccttgatcttgaa 365
                ||||||||||||||||||||||||
Sbjct: 12424779 gaagtagctgcccttgatcttgaa 12424802
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>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0705A04
          Length = 182468

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 342    gaagtagctgcccttgatcttgaa 365
              ||||||||||||||||||||||||
Sbjct: 104916 gaagtagctgcccttgatcttgaa 104939
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>dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0008C11
          Length = 157205

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 342   gaagtagctgcccttgatcttgaa 365
             ||||||||||||||||||||||||
Sbjct: 51746 gaagtagctgcccttgatcttgaa 51723
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 344     agtagctgcccttgatcttgaa 365
               ||||||||||||||||||||||
Sbjct: 6100684 agtagctgcccttgatcttgaa 6100663
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>emb|AL662939.4|OSJN00143 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013J13,
              complete sequence
          Length = 137572

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 344    agtagctgcccttgatcttgaa 365
              ||||||||||||||||||||||
Sbjct: 124082 agtagctgcccttgatcttgaa 124061
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>emb|AL137190.5|CNS01DWG Human chromosome 14 DNA sequence BAC R-241N4 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 155742

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 527    gcatggtgaggaggggcatccc 548
              ||||||||||||||||||||||
Sbjct: 144780 gcatggtgaggaggggcatccc 144801
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>emb|AL645994.7| Mouse DNA sequence from clone RP23-104F14 on chromosome 11 Contains the
             Upp gene for uridine phosphorylase, a polymerase (RNA) II
             (DNA directed) (Polr2c) pseudogene and the 5' end of the
             Abca13 gene for ATP-binding cassette sub-family A (ABC1)
             member 13, complete sequence
          Length = 136162

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   ctgcaagaacactcaggatcc 124
             |||||||||||||||||||||
Sbjct: 37845 ctgcaagaacactcaggatcc 37825
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 347      agctgcccttgatcttgaagt 367
                |||||||||||||||||||||
Sbjct: 14432105 agctgcccttgatcttgaagt 14432125
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>gb|AC093873.2| Homo sapiens BAC clone RP11-615B17 from 2, complete sequence
          Length = 210320

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 443   tcacggtgaagagcaggtcgcctgc 467
             ||||||||||| |||||||||||||
Sbjct: 49415 tcacggtgaagggcaggtcgcctgc 49391
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>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025H06
          Length = 151547

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 347   agctgcccttgatcttgaagt 367
             |||||||||||||||||||||
Sbjct: 93502 agctgcccttgatcttgaagt 93522
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>emb|CR391974.8| Zebrafish DNA sequence from clone CH211-59E10 in linkage group 19,
              complete sequence
          Length = 179116

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     ccagtgacaagtgacaacaca 69
              |||||||||||||||||||||
Sbjct: 171515 ccagtgacaagtgacaacaca 171535
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>emb|AL627347.10| Mouse DNA sequence from clone RP23-120A10 on chromosome 4, complete
            sequence
          Length = 144239

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 473  tgctgtcccctctgaacactt 493
            |||||||||||||||||||||
Sbjct: 8348 tgctgtcccctctgaacactt 8368
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>ref|XM_518446.1| PREDICTED: Pan troglodytes similar to dynein, axonemal, heavy
           polypeptide 8 (LOC462662), mRNA
          Length = 7984

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 578 ggatgctgaagatggcgccc 597
           ||||||||||||||||||||
Sbjct: 480 ggatgctgaagatggcgccc 499
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>gb|AC154398.6| Mus musculus chromosome 1, clone RP24-372I12, complete sequence
          Length = 178664

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 520    ttttcttgcatggtgaggaggggc 543
              ||||| ||||||||||||||||||
Sbjct: 108976 ttttcgtgcatggtgaggaggggc 108953
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>gb|AC134837.3| Mus musculus BAC clone RP24-338L20 from chromosome 16, complete sequence
          Length = 175319

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    ggatcagcgaagttgtcttc 444
              ||||||||||||||||||||
Sbjct: 136534 ggatcagcgaagttgtcttc 136553
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>gb|AC131691.4| Mus musculus BAC clone RP23-388P2 from chromosome 16, complete sequence
          Length = 202652

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 425    ggatcagcgaagttgtcttc 444
              ||||||||||||||||||||
Sbjct: 173474 ggatcagcgaagttgtcttc 173455
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>gb|AF527622.1| Homo sapiens axonemal dynein heavy chain 8 isoform 3 (DNAH8) mRNA,
           partial cds; alternatively spliced
          Length = 963

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 578 ggatgctgaagatggcgccc 597
           ||||||||||||||||||||
Sbjct: 321 ggatgctgaagatggcgccc 340
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>gb|AF527621.1| Homo sapiens axonemal dynein heavy chain 8 isoform 2 (DNAH8) mRNA,
           partial cds; alternatively spliced
          Length = 760

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 578 ggatgctgaagatggcgccc 597
           ||||||||||||||||||||
Sbjct: 118 ggatgctgaagatggcgccc 137
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>gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete sequence
          Length = 189774

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 7      ggcatgattcaccatgctag 26
              ||||||||||||||||||||
Sbjct: 141855 ggcatgattcaccatgctag 141836
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>gb|AC117550.8| Mus musculus chromosome 1, clone RP24-571N3, complete sequence
          Length = 156349

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      ggcatgattcaccatgctag 26
              ||||||||||||||||||||
Sbjct: 144070 ggcatgattcaccatgctag 144089
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>emb|AL391415.12| Human DNA sequence from clone RP3-503A6 on chromosome 6 Contains the
             GLO1 gene for glyoxalase I, a novel gene and the 5' part
             of the DNAH8 gene for dynein axonemal heavy polypeptide 8,
             complete sequence
          Length = 74577

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 578   ggatgctgaagatggcgccc 597
             ||||||||||||||||||||
Sbjct: 64322 ggatgctgaagatggcgccc 64341
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>gb|AC023595.19| Homo sapiens 12 BAC RP11-553N19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 161578

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   aagacatccatctcggtctt 419
             ||||||||||||||||||||
Sbjct: 23611 aagacatccatctcggtctt 23630
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>gb|AF414247.1| Gadus morhua clone UB6-N2S6-Ca MHC class Ia antigen mRNA, partial
           cds
          Length = 420

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 169 tgaacctcatccaggatcacaaca 192
           |||||||||||||| |||||||||
Sbjct: 63  tgaacctcatccagcatcacaaca 40
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 546     cccggcgccgtcgaggatgg 565
               ||||||||||||||||||||
Sbjct: 3514721 cccggcgccgtcgaggatgg 3514740
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>emb|BX120001.10| Zebrafish DNA sequence from clone CH211-217J8 in linkage group 16,
             complete sequence
          Length = 211279

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cagtgacaagtgacaacaca 69
             ||||||||||||||||||||
Sbjct: 24184 cagtgacaagtgacaacaca 24165
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 547      ccggcgccgtcgaggatggtgcggcggc 574
                ||||||||||||| |||| |||||||||
Sbjct: 16958348 ccggcgccgtcgacgatgatgcggcggc 16958321



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 552      gccgtcgaggatggtgcggcggctccgg 579
                ||||||||||| | ||||||||||||||
Sbjct: 14323841 gccgtcgaggaagctgcggcggctccgg 14323868
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>gb|AC018630.40| Homo sapiens 12 BAC RP11-673D15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167868

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    actgcaagaacactcaggat 122
              ||||||||||||||||||||
Sbjct: 159524 actgcaagaacactcaggat 159505
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>emb|AL840630.16| Zebrafish DNA sequence from clone CH211-279L11 in linkage group 17,
             complete sequence
          Length = 149164

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    cagtgacaagtgacaacaca 69
             ||||||||||||||||||||
Sbjct: 49558 cagtgacaagtgacaacaca 49577
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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 547   ccggcgccgtcgaggatggtgcggcggc 574
             ||||||||||||| |||| |||||||||
Sbjct: 88161 ccggcgccgtcgacgatgatgcggcggc 88134
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>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1261_A08
          Length = 162113

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 552    gccgtcgaggatggtgcggcggctccgg 579
              ||||||||||| | ||||||||||||||
Sbjct: 140386 gccgtcgaggaagctgcggcggctccgg 140413
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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0465E03
          Length = 151206

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 552   gccgtcgaggatggtgcggcggctccgg 579
             ||||||||||| | ||||||||||||||
Sbjct: 15644 gccgtcgaggaagctgcggcggctccgg 15671
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>gb|AC171062.5| Rhesus Macaque  BAC CH250-364H15 (Children's Hospital Oakland Research
              Institute Rhesus macaque Adult Male BAC Library) complete
              sequence
          Length = 164174

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    acggtgacactgaacgtgtc 248
              ||||||||||||||||||||
Sbjct: 154841 acggtgacactgaacgtgtc 154860
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>emb|AL935209.14| Zebrafish DNA sequence from clone DKEY-61N16, complete sequence
          Length = 162012

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tactgcaagaacactcagga 121
             ||||||||||||||||||||
Sbjct: 96274 tactgcaagaacactcagga 96255
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>gb|AC003671.1|F17O7 Arabidopsis thaliana chromosome 1 BAC F17O7 complete sequence
          Length = 92128

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    agtgacaagtgacaacacat 70
             ||||||||||||||||||||
Sbjct: 15328 agtgacaagtgacaacacat 15347


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,795,474
Number of Sequences: 3902068
Number of extensions: 3795474
Number of successful extensions: 75179
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74925
Number of HSP's gapped (non-prelim): 248
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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