>HXA9_MORSA (Q9PWD5) Homeobox protein Hox-A9|
          Length = 269

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 114 HPQGPVFAERQSRCQKWYLPP 176
           HPQGPV A+   R Q W L P
Sbjct: 86  HPQGPVGADTDGRYQSWLLEP 106

>PATJ_DROME (Q9NB04) Patj homolog|
          Length = 871

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 47  ERSSXGPEFEATHEAITSTSALTSSGTCVRRTPESVPKVVPTSLATAS 190
           ER   GP+FE   +AI +   L SS      TP   P  +PT +AT S
Sbjct: 400 ERYLRGPKFEQLQQAIAANDKLPSSAP---GTPSRAP--MPTPVATTS 442

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 44   HERSSXGPEFEATHEAITSTSALTSSGTCVRRTPESVPKVVPTSLATAS 190
            HE S+      A   A++S    T S   V+  PE +P+V P    TA+
Sbjct: 2638 HEASASSSAAAAAARAMSSVGIQTISDCSVQTEPEQLPRVSPAIHITAA 2686

>NRX3B_HUMAN (Q9HDB5) Neurexin-3-beta precursor (Neurexin III-beta)|
          Length = 536

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 26  PSIVGSHERSSXGPEFEATHEAITSTSALTSSGTCVRRTPESVPKVVPTS 175
           PSI+G+ + +S  PE   T    T+T A T++     R   S   + PTS
Sbjct: 262 PSILGTTQTTSMPPEMSTTVMETTTTMATTTT-----RKNRSTASIQPTS 306

>UVRC_CORJK (Q4JVI8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 690

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 123 PEDVNALVDVIASWVASNSGPXLLR 49
           PED  ALVD  +S++A N+ P L R
Sbjct: 188 PEDHRALVDQFSSFLAGNTEPVLRR 212

>NRX3B_BOVIN (Q28143) Neurexin-3-beta precursor (Neurexin III-beta)|
          Length = 456

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 26  PSIVGSHERSSXGPEFEATHEAITSTSALTSSGTCVRRTPESVPKVVPTS 175
           PSI+G+ + +S  PE   T    T+T A T++     R   S   + PTS
Sbjct: 289 PSILGTTQTTSMPPEMSTTVMETTTTMATTTT-----RKNRSTASIQPTS 333

>NRX3A_HUMAN (Q9Y4C0) Neurexin-3-alpha precursor (Neurexin III-alpha)|
          Length = 1541

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 26   PSIVGSHERSSXGPEFEATHEAITSTSALTSSGTCVRRTPESVPKVVPTS 175
            PSI+G+ + +S  PE   T    T+T A T++     R   S   + PTS
Sbjct: 1267 PSILGTTQTTSMPPEMSTTVMETTTTMATTTT-----RKNRSTASIQPTS 1311

>EPHB2_COTJA (Q90344) Ephrin type-B receptor 2 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor QEK5)
          Length = 987

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 11  YYLHAPSIVGSHERSSXGPEFEATHEAITSTSALTSSGTCVRRTPE 148
           +Y   P ++ +      G +F+ T     STS + S GTC+ +  E
Sbjct: 194 FYRKCPRVIQN------GADFQETLSGAESTSLVASRGTCINKAEE 233


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,612,087
Number of Sequences: 219361
Number of extensions: 388581
Number of successful extensions: 1315
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)