ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal21g20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor ... 529 e-147
2emb|AJ222783.1|HVJ222783 Hordeum vulgare mRNA for cytochrome b6/... 363 3e-97
3gb|BT016255.1| Zea mays clone Contig88 mRNA sequence 278 1e-71
4gb|AY104934.1| Zea mays PCO071754 mRNA sequence 262 7e-67
5dbj|AK071634.1| Oryza sativa (japonica cultivar-group) cDNA clon... 236 4e-59
6gb|AF093631.1|AF093631 Oryza sativa Rieske Fe-S precursor protei... 236 4e-59
7gb|AY581830.1| Cynodon dactylon putative Rieske Fe-S precursor p... 202 6e-49
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
9dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
10emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 80 6e-12
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 80 6e-12
12ref|NM_193963.1| Oryza sativa (japonica cultivar-group), predic... 74 3e-10
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
14dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
16dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
17dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
18gb|DQ122916.1| Chlamydomonas incerta chloroplast cytochrome B6/F... 70 5e-09
19dbj|D32003.1| Chlamydomonas reinhardtii mRNA for chloroplast Rie... 70 5e-09
20gb|DQ384526.1| Panax ginseng clone PG6L-3 photosynthetic electro... 66 8e-08
21gb|AF037456.1|AF037456 Fritillaria agrestis cytochrome B6-F comp... 66 8e-08
22gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
24dbj|AB025003.1| Cicer arietinum mRNA for plastoquinol-plastocyan... 60 5e-06
25gb|AY300039.1| Solanum tuberosum putative Rieske Fe-S protein pr... 58 2e-05
26emb|X63605.1|PSPETC P.sativum petC mRNA for chloroplast Rieske F... 58 2e-05
27gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21... 58 2e-05
28gb|AY826845.1| Pavlova lutheri clone PLCB61 chloroplast cytochro... 56 8e-05
29ref|NM_116566.3| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECT... 52 0.001
30ref|NM_178964.1| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECT... 52 0.001
31gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV... 52 0.001
32emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, c... 52 0.001
33emb|AJ292972.1|ATH292972 Arabidopsis thaliana petC gene for Ries... 52 0.001
34emb|AJ243702.1|ATH243702 Arabidopsis thaliana mRNA for rieske ir... 52 0.001
35gb|AY093726.1| Arabidopsis thaliana AT4g03280/F4C21_21 mRNA, com... 52 0.001
36gb|AF410296.1|AF410296 Arabidopsis thaliana AT4g03280/F4C21_21 m... 52 0.001
37gb|AF370566.1|AF370566 Arabidopsis thaliana putative component o... 52 0.001
38emb|BX826457.1|CNS0A4G1 Arabidopsis thaliana Full-length cDNA Co... 52 0.001
39emb|BX827560.1|CNS0A2RQ Arabidopsis thaliana Full-length cDNA Co... 52 0.001
40dbj|AU066527.1| Chlamydomonas sp. HS-5 mRNA for hypothetical pro... 52 0.001
41gb|AY267656.1| Bigelowiella natans Fe-S subunit of cytochrome c6... 48 0.019
42emb|AJ784852.1| Cyanophora paradoxa mRNA for Rieske iron-sulphur... 48 0.019
43gb|AF110783.1|AF110783 Volvox carteri f. nagariensis clone G9 ri... 48 0.019
44emb|X66009.1|NTRFES1 N.tabacum mRNA for chloroplast Rieske FeS p... 46 0.077
45emb|X64353.1|NTRFSCBFC N.tabacum mRNA for Rieske Fe/S protein of... 46 0.077
46dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 46 0.077
47gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 46 0.077
48emb|BX826302.1|CNS0A381 Arabidopsis thaliana Full-length cDNA Co... 44 0.30
49emb|X76299.1|CRPETC C.reinhardtii petC gene 42 1.2
50dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
51gb|AF336983.1|AF336983 Vaucheria litorea cytochrome b6f complex ... 42 1.2
52gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
53emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.2
54gb|AC120788.7| Mus musculus chromosome 14, clone RP23-279B13, co... 40 4.7
55ref|XM_754954.1| Ustilago maydis 521 hypothetical protein (UM039... 40 4.7
56gb|AC125332.3| Mus musculus BAC clone RP23-113I20 from 3, comple... 40 4.7
57gb|AC121928.2| Mus musculus BAC clone RP24-204F1 from 3, complet... 40 4.7
58emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chr... 40 4.7
59emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on ch... 40 4.7
60gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 ma... 40 4.7
61emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chro... 40 4.7
62emb|BX826362.1|CNS0A4FZ Arabidopsis thaliana Full-length cDNA Co... 40 4.7
63gb|AC012451.8| Homo sapiens BAC clone RP11-414K19 from 2, comple... 40 4.7 
>gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor protein mRNA,
           complete cds
          Length = 866

 Score =  529 bits (267), Expect = e-147
 Identities = 340/358 (94%), Gaps = 6/358 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactgtatacatataactggnatacaagnaaacaggtgcatttatagcaggagtactctt 60
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct: 855 gactgtatacatataactgg-atacaag-aaacaggtgcatttatagcaggagtagtctt 798

                                                                       
Query: 61  at--agcagcgttcttaggactggcaggaggcttaacatatcacacgagtgagctttgct 118
           ||  ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 797 atgtagcagcgttcttaggactggcaggaggcttaacatatcacaggagtgagcattgct 738

                                                                       
Query: 119 gccggagcttgtgtcgcttatttccaccacgggttctcgccggtcctgaagtcggtctcc 178
           ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 737 gccggagcttgcgtcgcttatttccaccacgggttgtcgccggtcctgaagtcggtctcc 678

                                                                       
Query: 179 acccatggcacgaagacgaccttgctgtcgtcgacgtcggcgtgaacgagggccagcgac 238
           ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 677 acccacggcacgaagacgaccttgccgtcgtcgacgtcggcgtgaaccagggccagcgac 618

                                                                       
Query: 239 agaggtgcaggtccacggacaaccttgnccctggttgttgtactgggatccatggcaagg 298
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 617 agaggtgcaggcccacggacaaccttg-ccctggttgttgtactgggatccatggcaggg 559

                                                                     
Query: 299 gcagaggaacttgttctcggcggcgttccaaggcacgacgcagcccaagatgcgtgca 356
           |||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||
Sbjct: 558 gcagaggaacttgttctcggcggcgttccacggcacgacgca-tccaagatgcgtgca 502
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>emb|AJ222783.1|HVJ222783 Hordeum vulgare mRNA for cytochrome b6/f-complex iron-sulfur
           like-protein, clone RG115
          Length = 275

 Score =  363 bits (183), Expect = 3e-97
 Identities = 200/203 (98%), Gaps = 2/203 (0%)
 Strand = Plus / Minus

                                                                       
Query: 155 tcgccggtcctgaagtcggtctccacccatggcacgaagacgaccttgctgtcgtcgacg 214
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 275 tcgccggtcctgaagtcggtctccacccatggcacgaagacgaccttgccgtcgtcgacg 216

                                                                       
Query: 215 tcggcgtgaacgagggccagcgacagaggtgcaggtccacggacaaccttgnccctggtt 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 215 tcggcgtgaacgagggccagcgacagaggtgcaggtccacggacaaccttg-ccctggtt 157

                                                                       
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctcggcggcgttccaaggcac 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gttgtactgggatccatggcaagggcagaggaacttgttctcggcggcgttccaaggcac 97

                                  
Query: 335 gacgcagcccaagatgcgtgcag 357
           ||||||| |||||||||||||||
Sbjct: 96  gacgcag-ccaagatgcgtgcag 75
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>gb|BT016255.1| Zea mays clone Contig88 mRNA sequence
          Length = 998

 Score =  278 bits (140), Expect = 1e-71
 Identities = 189/204 (92%), Gaps = 1/204 (0%)
 Strand = Plus / Minus

                                                                       
Query: 140 ttccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacc 199
           ||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 746 ttccaccacgggtcctcgccggtcctgaagtcggtctccacccacgggacgaagaggacc 687

                                                                       
Query: 200 ttgctgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggaca 259
           |||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||||| 
Sbjct: 686 ttgccgtcgtcgacgtcggcgtgaaccagggccagcgacagaggcgccggtccacggacc 627

                                                                       
Query: 260 accttgnccctggttgttgtactgggatccatggcaagggcagaggaacttgttctcggc 319
           |||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct: 626 accttg-ccctggttgttgtactgggatccgtggcatgggcagatgaacttgttctcggc 568

                                   
Query: 320 ggcgttccaaggcacgacgcagcc 343
           | ||||||| ||||||||||||||
Sbjct: 567 gccgttccacggcacgacgcagcc 544
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>gb|AY104934.1| Zea mays PCO071754 mRNA sequence
          Length = 1058

 Score =  262 bits (132), Expect = 7e-67
 Identities = 187/204 (91%), Gaps = 1/204 (0%)
 Strand = Plus / Minus

                                                                       
Query: 140 ttccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacc 199
           |||||||| |||| |||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 805 ttccaccatgggtcctcgccggtcctgaagtcggtctccacccacgggacgaagaggacc 746

                                                                       
Query: 200 ttgctgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggaca 259
           |||| ||||||||||||||||||||| ||||||||||||||||| || ||||||||||| 
Sbjct: 745 ttgccgtcgtcgacgtcggcgtgaaccagggccagcgacagaggcgccggtccacggacc 686

                                                                       
Query: 260 accttgnccctggttgttgtactgggatccatggcaagggcagaggaacttgttctcggc 319
           |||||| ||||||||||||||||||||||| ||||| ||||||| |||||||||||| ||
Sbjct: 685 accttg-ccctggttgttgtactgggatccgtggcaggggcagatgaacttgttctcagc 627

                                   
Query: 320 ggcgttccaaggcacgacgcagcc 343
           | ||||||| ||||||||||||||
Sbjct: 626 gccgttccacggcacgacgcagcc 603
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>dbj|AK071634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100K03, full
           insert sequence
          Length = 1082

 Score =  236 bits (119), Expect = 4e-59
 Identities = 193/215 (89%), Gaps = 2/215 (0%)
 Strand = Plus / Minus

                                                                       
Query: 142 ccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacctt 201
           |||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 725 ccaccacgggttgtcgccggtcctgaagtcggtctccacccacggcacgaagagaacctt 666

                                                                       
Query: 202 gctgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggacaac 261
           || |||||||||||||||||| || |  ||||||||||| || |||||||||||||| ||
Sbjct: 665 gccgtcgtcgacgtcggcgtgcaccaatgccagcgacaggggagcaggtccacggacgac 606

                                                                       
Query: 262 cttgnccctggttgttgtactgggatccatggcaagggcagaggaacttgttctcggcgg 321
           | || ||||||||||||||||| || || ||||| ||||||| |||||||||||||||||
Sbjct: 605 cctg-ccctggttgttgtactgcgagccgtggcaggggcagatgaacttgttctcggcgg 547

                                              
Query: 322 cgttccaaggcacgacgcagcccaagatgcgtgca 356
           ||||||| ||||||||||| |||||| ||||||||
Sbjct: 546 cgttccacggcacgacgca-cccaaggtgcgtgca 513
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>gb|AF093631.1|AF093631 Oryza sativa Rieske Fe-S precursor protein (RISP) mRNA, complete
           cds
          Length = 919

 Score =  236 bits (119), Expect = 4e-59
 Identities = 193/215 (89%), Gaps = 2/215 (0%)
 Strand = Plus / Minus

                                                                       
Query: 142 ccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacctt 201
           |||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 713 ccaccacgggttgtcgccggtcctgaagtcggtctccacccacggcacgaagagaacctt 654

                                                                       
Query: 202 gctgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggacaac 261
           || |||||||||||||||||| || |  ||||||||||| || |||||||||||||| ||
Sbjct: 653 gccgtcgtcgacgtcggcgtgcaccaatgccagcgacaggggagcaggtccacggacgac 594

                                                                       
Query: 262 cttgnccctggttgttgtactgggatccatggcaagggcagaggaacttgttctcggcgg 321
           | || ||||||||||||||||| || || ||||| ||||||| |||||||||||||||||
Sbjct: 593 cctg-ccctggttgttgtactgcgagccgtggcaggggcagatgaacttgttctcggcgg 535

                                              
Query: 322 cgttccaaggcacgacgcagcccaagatgcgtgca 356
           ||||||| ||||||||||| |||||| ||||||||
Sbjct: 534 cgttccacggcacgacgca-cccaaggtgcgtgca 501
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>gb|AY581830.1| Cynodon dactylon putative Rieske Fe-S precursor protein mRNA,
           partial cds
          Length = 511

 Score =  202 bits (102), Expect = 6e-49
 Identities = 181/206 (87%), Gaps = 1/206 (0%)
 Strand = Plus / Minus

                                                                       
Query: 140 ttccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacc 199
           |||||||| |||| |||||||||||||||||||||||||||||| || ||||| | | ||
Sbjct: 327 ttccaccaggggtcctcgccggtcctgaagtcggtctccacccacgggacgaaaagggcc 268

                                                                       
Query: 200 ttgctgtcgtcgacgtcggcgtgaacgagggccagcgacagaggtgcaggtccacggaca 259
           |||| ||||||||||||||||||||| | |||||||||||| || || ||||||||||| 
Sbjct: 267 ttgccgtcgtcgacgtcggcgtgaaccaaggccagcgacagtggcgccggtccacggacg 208

                                                                       
Query: 260 accttgnccctggttgttgtactgggatccatggcaagggcagaggaacttgttctcggc 319
           |||||| ||||||||||||||||||||||| ||||| ||| | | |||||||||||||| 
Sbjct: 207 accttg-ccctggttgttgtactgggatccgtggcatgggtacatgaacttgttctcggg 149

                                     
Query: 320 ggcgttccaaggcacgacgcagccca 345
           ||  ||||| ||||||||||| ||||
Sbjct: 148 gggattccacggcacgacgcatccca 123
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  121 bits (61), Expect = 2e-24
 Identities = 76/81 (93%)
 Strand = Plus / Minus

                                                                            
Query: 142      ccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacctt 201
                |||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 22132954 ccaccacgggttgtcgccggtcctgaagtcggtctccacccacggcacgaagagaacctt 22132895

                                     
Query: 202      gctgtcgtcgacgtcggcgtg 222
                || ||||||||||||||||||
Sbjct: 22132894 gccgtcgtcgacgtcggcgtg 22132874



 Score =  119 bits (60), Expect = 6e-24
 Identities = 101/112 (90%), Gaps = 2/112 (1%)
 Strand = Plus / Minus

                                                                            
Query: 245      gcaggtccacggacaaccttgnccctggttgttgtactgggatccatggcaagggcagag 304
                |||||||||||||| ||| || ||||||||||||||||| || || ||||| ||||||| 
Sbjct: 22132649 gcaggtccacggacgaccctg-ccctggttgttgtactgcgagccgtggcaggggcagat 22132591

                                                                    
Query: 305      gaacttgttctcggcggcgttccaaggcacgacgcagcccaagatgcgtgca 356
                |||||||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 22132590 gaacttgttctcggcggcgttccacggcacgacgca-cccaaggtgcgtgca 22132540
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>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0058I18
          Length = 151453

 Score =  121 bits (61), Expect = 2e-24
 Identities = 76/81 (93%)
 Strand = Plus / Minus

                                                                         
Query: 142   ccaccacgggttctcgccggtcctgaagtcggtctccacccatggcacgaagacgacctt 201
             |||||||||||| ||||||||||||||||||||||||||||| ||||||||||  |||||
Sbjct: 86610 ccaccacgggttgtcgccggtcctgaagtcggtctccacccacggcacgaagagaacctt 86551

                                  
Query: 202   gctgtcgtcgacgtcggcgtg 222
             || ||||||||||||||||||
Sbjct: 86550 gccgtcgtcgacgtcggcgtg 86530



 Score =  119 bits (60), Expect = 6e-24
 Identities = 101/112 (90%), Gaps = 2/112 (1%)
 Strand = Plus / Minus

                                                                         
Query: 245   gcaggtccacggacaaccttgnccctggttgttgtactgggatccatggcaagggcagag 304
             |||||||||||||| ||| || ||||||||||||||||| || || ||||| ||||||| 
Sbjct: 86305 gcaggtccacggacgaccctg-ccctggttgttgtactgcgagccgtggcaggggcagat 86247

                                                                 
Query: 305   gaacttgttctcggcggcgttccaaggcacgacgcagcccaagatgcgtgca 356
             |||||||||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 86246 gaacttgttctcggcggcgttccacggcacgacgca-cccaaggtgcgtgca 86196
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>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
             complete sequence
          Length = 188317

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 87/103 (84%), Gaps = 6/103 (5%)
 Strand = Plus / Plus

                                                                         
Query: 142   ccaccacgggttctcgccggtcctgaagtcggtctc------cacccatggcacgaagac 195
             |||||||||||| ||||| |||||||||||||||||      |||||| |||||||||| 
Sbjct: 53046 ccaccacgggttgtcgccagtcctgaagtcggtctccactcacacccacggcacgaagag 53105

                                                        
Query: 196   gaccttgctgtcgtcgacgtcggcgtgaacgagggccagcgac 238
              ||||||  ||||||||||||||||||||| |  |||||||||
Sbjct: 53106 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 53148
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 87/103 (84%), Gaps = 6/103 (5%)
 Strand = Plus / Plus

                                                                            
Query: 142      ccaccacgggttctcgccggtcctgaagtcggtctc------cacccatggcacgaagac 195
                |||||||||||| ||||| |||||||||||||||||      |||||| |||||||||| 
Sbjct: 18961122 ccaccacgggttgtcgccagtcctgaagtcggtctccactcacacccacggcacgaagag 18961181

                                                           
Query: 196      gaccttgctgtcgtcgacgtcggcgtgaacgagggccagcgac 238
                 ||||||  ||||||||||||||||||||| |  |||||||||
Sbjct: 18961182 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 18961224
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>ref|NM_193963.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 705

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                       
Query: 174 tctccacccatggcacgaagacgaccttgctgtcgtcgacgtcggcgtgaacgagggcca 233
           |||||||||| ||||||||||  ||||||| ||||||||||||||||||||| |  ||||
Sbjct: 160 tctccacccacggcacgaagagaaccttgccgtcgtcgacgtcggcgtgaaccaatgcca 101

                
Query: 234 gcgac 238
           |||||
Sbjct: 100 gcgac 96
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 174      tctccacccatggcacgaagacgaccttgctgtcgtcgacgtcggcgtgaacgagggcca 233
                |||||||||| ||||||||||  ||||||| ||||||||||||||||||||| |  ||||
Sbjct: 14242662 tctccacccacggcacgaagagaaccttgccgtcgtcgacgtcggcgtgaaccaatgcca 14242603

                     
Query: 234      gcgac 238
                |||||
Sbjct: 14242602 gcgac 14242598
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>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0458A05
          Length = 120593

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                         
Query: 174   tctccacccatggcacgaagacgaccttgctgtcgtcgacgtcggcgtgaacgagggcca 233
             |||||||||| ||||||||||  ||||||| ||||||||||||||||||||| |  ||||
Sbjct: 38352 tctccacccacggcacgaagagaaccttgccgtcgtcgacgtcggcgtgaaccaatgcca 38293

                  
Query: 234   gcgac 238
             |||||
Sbjct: 38292 gcgac 38288
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 86/103 (83%), Gaps = 6/103 (5%)
 Strand = Plus / Minus

                                                                           
Query: 142     ccaccacgggttctcgccggtcctgaagtcggtctccac------ccatggcacgaagac 195
               |||||||||||| ||||| ||||||||||| ||||||||      ||| |||||||||| 
Sbjct: 8732264 ccaccacgggttgtcgccagtcctgaagtcagtctccactcacacccacggcacgaagag 8732205

                                                          
Query: 196     gaccttgctgtcgtcgacgtcggcgtgaacgagggccagcgac 238
                ||||||  ||||||||||||||||||||| |  |||||||||
Sbjct: 8732204 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 8732162
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>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0463G12
          Length = 145403

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 86/103 (83%), Gaps = 6/103 (5%)
 Strand = Plus / Minus

                                                                          
Query: 142    ccaccacgggttctcgccggtcctgaagtcggtctccac------ccatggcacgaagac 195
              |||||||||||| ||||| ||||||||||| ||||||||      ||| |||||||||| 
Sbjct: 139311 ccaccacgggttgtcgccagtcctgaagtcagtctccactcacacccacggcacgaagag 139252

                                                         
Query: 196    gaccttgctgtcgtcgacgtcggcgtgaacgagggccagcgac 238
               ||||||  ||||||||||||||||||||| |  |||||||||
Sbjct: 139251 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 139209
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>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0052K15
          Length = 156250

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 86/103 (83%), Gaps = 6/103 (5%)
 Strand = Plus / Minus

                                                                         
Query: 142   ccaccacgggttctcgccggtcctgaagtcggtctccac------ccatggcacgaagac 195
             |||||||||||| ||||| ||||||||||| ||||||||      ||| |||||||||| 
Sbjct: 31343 ccaccacgggttgtcgccagtcctgaagtcagtctccactcacacccacggcacgaagag 31284

                                                        
Query: 196   gaccttgctgtcgtcgacgtcggcgtgaacgagggccagcgac 238
              ||||||  ||||||||||||||||||||| |  |||||||||
Sbjct: 31283 aaccttgtcgtcgtcgacgtcggcgtgaaccaatgccagcgac 31241
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>gb|DQ122916.1| Chlamydomonas incerta chloroplast cytochrome B6/F complex rieske
           iron-sulfur protein (PetC) mRNA, partial cds; nuclear
           gene for chloroplast product
          Length = 1178

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 99/119 (83%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                       
Query: 227 agggccagcgacagaggtgcaggtccacggacaaccttgnccctggttgttgtactggga 286
           |||||||||||||| || || || |||||||| |||||| ||||    ||||||||| ||
Sbjct: 443 agggccagcgacaggggagcggggccacggaccaccttg-ccctcagcgttgtactgaga 385

                                                                      
Query: 287 tccatggcaagggcagaggaacttgttctcggcggcgttccaaggcacgacgcagccca 345
            || |||||||||||   ||||||||||||||| ||   ||||||||||||||||||||
Sbjct: 384 gccgtggcaagggcacttgaacttgttctcggccgccacccaaggcacgacgcagccca 326
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>dbj|D32003.1| Chlamydomonas reinhardtii mRNA for chloroplast Rieske Fe-S
           precursor protein, complete cds
          Length = 1436

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 99/119 (83%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                       
Query: 227 agggccagcgacagaggtgcaggtccacggacaaccttgnccctggttgttgtactggga 286
           |||||||||||||| || || || |||||||| |||||| ||||    ||||||||| ||
Sbjct: 576 agggccagcgacaggggagcggggccacggaccaccttg-ccctcagcgttgtactgaga 518

                                                                      
Query: 287 tccatggcaagggcagaggaacttgttctcggcggcgttccaaggcacgacgcagccca 345
            || |||||||||||   ||||||||||||||| ||   ||||||||||||||||||||
Sbjct: 517 gccgtggcaagggcacttgaacttgttctcggccgccacccaaggcacgacgcagccca 459
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>gb|DQ384526.1| Panax ginseng clone PG6L-3 photosynthetic electron transfer-like
           protein mRNA, complete cds
          Length = 770

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 70/81 (86%), Gaps = 1/81 (1%)
 Strand = Plus / Minus

                                                                       
Query: 236 gacagaggtgcaggtccacggacaaccttgnccctggttgttgtactgggatccatggca 295
           |||||||| ||||| || |  ||||||||| || |||||||||||||| |||||||||||
Sbjct: 528 gacagaggagcagggcctctaacaaccttg-ccttggttgttgtactgagatccatggca 470

                                
Query: 296 agggcagaggaacttgttctc 316
            ||||| | ||||||||||||
Sbjct: 469 tgggcacatgaacttgttctc 449
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>gb|AF037456.1|AF037456 Fritillaria agrestis cytochrome B6-F complex iron-sulfur subunit
           precursor (petC) mRNA, complete cds
          Length = 881

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 72/84 (85%), Gaps = 1/84 (1%)
 Strand = Plus / Minus

                                                                       
Query: 230 gccagcgacagaggtgcaggtccacggacaaccttgnccctggttgttgtactgggatcc 289
           ||||||||||  ||||||||||| | |||||||||  || || |||||||| || |||||
Sbjct: 605 gccagcgacaacggtgcaggtcccctgacaacctt-cccttgattgttgtattgcgatcc 547

                                   
Query: 290 atggcaagggcagaggaacttgtt 313
            ||||| |||||||||||||||||
Sbjct: 546 gtggcaggggcagaggaacttgtt 523
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>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05,
             complete sequence
          Length = 143400

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 176   tccacccatggcacgaagacgaccttgctgtcgtcgacgtcggcgtgaacgagggccagc 235
             |||| ||| ||||||||||  ||||||| ||||||||||||||||||||| |  ||||||
Sbjct: 64199 tccatccacggcacgaagataaccttgccgtcgtcgacgtcggcgtgaaccaatgccagc 64258

                
Query: 236   gac 238
             |||
Sbjct: 64259 gac 64261
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 176      tccacccatggcacgaagacgaccttgctgtcgtcgacgtcggcgtgaacgagggccagc 235
                |||| ||| ||||||||||  ||||||| ||||||||||||||||||||| |  ||||||
Sbjct: 16113029 tccatccacggcacgaagataaccttgccgtcgtcgacgtcggcgtgaaccaatgccagc 16113088

                   
Query: 236      gac 238
                |||
Sbjct: 16113089 gac 16113091
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>dbj|AB025003.1| Cicer arietinum mRNA for plastoquinol-plastocyanin reductase,
           partial cds
          Length = 479

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 276 ttgtactgggatccatggcaagggcagaggaacttgttctcggcgg 321
           |||||||| ||||||||||| |||||||  ||||||||||||||||
Sbjct: 361 ttgtactgagatccatggcaggggcagataaacttgttctcggcgg 316
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>gb|AY300039.1| Solanum tuberosum putative Rieske Fe-S protein precursor (FeS)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 693

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                       
Query: 273 ttgttgtactgggatccatggcaagggcagaggaacttgttctcggcggcgttccaaggc 332
           |||||||| || ||||||||||||||||| | |||||||||||| || |  ||||| |||
Sbjct: 557 ttgttgtattgagatccatggcaagggcaaatgaacttgttctcagcagtattccacggc 498

                
Query: 333 acgac 337
           |||||
Sbjct: 497 acgac 493
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>emb|X63605.1|PSPETC P.sativum petC mRNA for chloroplast Rieske FeS protein
          Length = 880

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                    
Query: 276 ttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 591 ttgtactgagatccatggcaggggcagatgaacttgttctc 551
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>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete sequence
          Length = 101563

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 276    ttgtactgggatccatggcaagggcagaggaacttgttctc 316
              ||||| ||||||||||||||||| || ||||||||||||||
Sbjct: 101211 ttgtattgggatccatggcaaggacataggaacttgttctc 101171
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>gb|AY826845.1| Pavlova lutheri clone PLCB61 chloroplast cytochrome b6 mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 640

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 68/80 (85%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                       
Query: 278 gtactgggatccatggcaagggcagaggaacttgttctcggcggcgttccaaggcacgac 337
           |||||| || || ||||| ||||||| |||||| | ||  ||||||||||| ||||||||
Sbjct: 310 gtactgcgagccgtggcaggggcagatgaacttctgctgcgcggcgttccacggcacgac 251

                               
Query: 338 gcagcccaagatgcgtgcag 357
           |||| ||||| |||||||||
Sbjct: 250 gcag-ccaaggtgcgtgcag 232
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>ref|NM_116566.3| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)
           AT4G03280 (PETC) transcript variant AT4G03280.1 mRNA,
           complete cds
          Length = 963

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 678 gttgtattgggatccatggcaaggacatagaaacttgttctc 637
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>ref|NM_178964.1| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)
           AT4G03280 (PETC) transcript variant AT4G03280.2 mRNA,
           complete cds
          Length = 1062

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 777 gttgtattgggatccatggcaaggacatagaaacttgttctc 736
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>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM,
             complete sequence
          Length = 136335

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 275   gttgtactgggatccatggcaagggcagaggaacttgttctc 316
             |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 74269 gttgtattgggatccatggcaaggacatagaaacttgttctc 74228
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>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8
          Length = 195429

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 275   gttgtactgggatccatggcaagggcagaggaacttgttctc 316
             |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 92641 gttgtattgggatccatggcaaggacatagaaacttgttctc 92600
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>emb|AJ292972.1|ATH292972 Arabidopsis thaliana petC gene for Rieske FeS protein, exons 1-5
          Length = 2145

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 275  gttgtactgggatccatggcaagggcagaggaacttgttctc 316
            |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 1917 gttgtattgggatccatggcaaggacatagaaacttgttctc 1876
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>emb|AJ243702.1|ATH243702 Arabidopsis thaliana mRNA for rieske iron-sulfur protein precursor
           (petC gene)
          Length = 957

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 654 gttgtattgggatccatggcaaggacatagaaacttgttctc 613
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>gb|AY093726.1| Arabidopsis thaliana AT4g03280/F4C21_21 mRNA, complete cds
          Length = 633

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 492 gttgtattgggatccatggcaaggacatagaaacttgttctc 451
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>gb|AF410296.1|AF410296 Arabidopsis thaliana AT4g03280/F4C21_21 mRNA, complete cds
          Length = 1061

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 780 gttgtattgggatccatggcaaggacatagaaacttgttctc 739
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>gb|AF370566.1|AF370566 Arabidopsis thaliana putative component of cytochrome B6-F complex
           (F4C21.21) mRNA, complete cds
          Length = 732

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 549 gttgtattgggatccatggcaaggacatagaaacttgttctc 508
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>emb|BX826457.1|CNS0A4G1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB28ZC01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 532

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 252 gttgtattgggatccatggcaaggacatagaaacttgttctc 211
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>emb|BX827560.1|CNS0A2RQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS74ZE01 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1358

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 275  gttgtactgggatccatggcaagggcagaggaacttgttctc 316
            |||||| ||||||||||||||||| || || |||||||||||
Sbjct: 1133 gttgtattgggatccatggcaaggacatagaaacttgttctc 1092
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>dbj|AU066527.1| Chlamydomonas sp. HS-5 mRNA for hypothetical protein, NaCl
           inducible, complete cds, clone:NaEX96-104
          Length = 578

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 267 ccctggttgttgtactgggatccatggcaagggcagaggaacttgttctc 316
           ||||||||||||||||| ||||| ||||| |||||   ||||||||||||
Sbjct: 468 ccctggttgttgtactgcgatccgtggcaggggcacttgaacttgttctc 419
to top
>gb|AY267656.1| Bigelowiella natans Fe-S subunit of cytochrome c6f complex mRNA,
           complete cds; nuclear gene for plastid product
          Length = 1025

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 278 gtactgggatccatggcaagggca 301
           ||||||||||||||||||||||||
Sbjct: 653 gtactgggatccatggcaagggca 630
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>emb|AJ784852.1| Cyanophora paradoxa mRNA for Rieske iron-sulphur protein (petC-1
           gene)
          Length = 864

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 67/80 (83%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                       
Query: 278 gtactgggatccatggcaagggcagaggaacttgttctcggcggcgttccaaggcacgac 337
           ||||||||| || ||||| ||||| | |||||||||||| |  |||||||| || |||||
Sbjct: 615 gtactgggagccgtggcacgggcacatgaacttgttctccgacgcgttccacgggacgac 556

                               
Query: 338 gcagcccaagatgcgtgcag 357
           ||| |||||| || ||||||
Sbjct: 555 gca-cccaaggtgagtgcag 537
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>gb|AF110783.1|AF110783 Volvox carteri f. nagariensis clone G9 rieske iron-sulfur protein
           precursor (petC) mRNA, nuclear gene encoding chloroplast
           protein, complete cds
          Length = 1159

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 276 ttgtactgggatccatggcaagggcagaggaacttgttctcggcggcgttccaaggcacg 335
           |||||||| || || |||||||||||   ||||||||||||||| ||   |||||| |||
Sbjct: 505 ttgtactgagagccgtggcaagggcacttgaacttgttctcggccgccacccaaggaacg 446

                       
Query: 336 acgcagcccaag 347
           || |||||||||
Sbjct: 445 acacagcccaag 434
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>emb|X66009.1|NTRFES1 N.tabacum mRNA for chloroplast Rieske FeS precursor protein 1
          Length = 814

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 270 tggttgttgtactgggatccatggcaagggcagaggaacttgttctc 316
           ||||||||||| || ||||||||||| ||||| |  |||||||||||
Sbjct: 592 tggttgttgtattgagatccatggcaggggcaaataaacttgttctc 546
to top
>emb|X64353.1|NTRFSCBFC N.tabacum mRNA for Rieske Fe/S protein of cytochrome b6/f complex
          Length = 833

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 270 tggttgttgtactgggatccatggcaagggcagaggaacttgttctc 316
           ||||||||||| || ||||||||||| ||||| |  |||||||||||
Sbjct: 556 tggttgttgtattgagatccatggcaggggcaaataaacttgttctc 510
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 321    gcgttccaaggcacgacgcagcccaag 347
              |||||||||||||| ||||||||||||
Sbjct: 367671 gcgttccaaggcaccacgcagcccaag 367645
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 321     gcgttccaaggcacgacgcagcccaag 347
               |||||||||||||| ||||||||||||
Sbjct: 1253134 gcgttccaaggcaccacgcagcccaag 1253160
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>emb|BX826302.1|CNS0A381 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB13ZB05 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 790

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 275 gttgtactgggatccatggcaagggcagaggaacttgttctc 316
           |||||| ||||||||||||||||| || |  |||||||||||
Sbjct: 553 gttgtattgggatccatggcaaggacataaaaacttgttctc 512
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>emb|X76299.1|CRPETC C.reinhardtii petC gene
          Length = 1608

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 275  gttgtactgggatccatggcaagggcagaggaacttgttctcggc 319
            ||||||||| || || |||||||||||   |||||||||||||||
Sbjct: 1148 gttgtactgagagccgtggcaagggcacttgaacttgttctcggc 1104



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 326 ccaaggcacgacgcagccca 345
           ||||||||||||||||||||
Sbjct: 959 ccaaggcacgacgcagccca 940
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 196      gaccttgctgtcgtcgacgtc 216
                |||||||||||||||||||||
Sbjct: 25526148 gaccttgctgtcgtcgacgtc 25526168
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>gb|AF336983.1|AF336983 Vaucheria litorea cytochrome b6f complex Rieske FeS protein mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 222

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                       
Query: 279 tactgggatccatggcaagggcagaggaacttgttctcggcggcgttccaaggcacgacg 338
           ||||| || ||||||||||| |||| ||||||||| || ||   |||||||||||| || 
Sbjct: 128 tactgcgacccatggcaaggacagatgaacttgttttcagccttgttccaaggcacaaca 69

                    
Query: 339 cagcccaag 347
           || ||||||
Sbjct: 68  catcccaag 60
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 196      gaccttgctgtcgtcgacgtc 216
                |||||||||||||||||||||
Sbjct: 25454324 gaccttgctgtcgtcgacgtc 25454344
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>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144084

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   gaccttgctgtcgtcgacgtc 216
             |||||||||||||||||||||
Sbjct: 95530 gaccttgctgtcgtcgacgtc 95550
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>gb|AC120788.7| Mus musculus chromosome 14, clone RP23-279B13, complete sequence
          Length = 215810

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    ttaggactggcaggaggctt 92
             ||||||||||||||||||||
Sbjct: 14455 ttaggactggcaggaggctt 14436
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>ref|XM_754954.1| Ustilago maydis 521 hypothetical protein (UM03900.1) partial mRNA
          Length = 3015

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  ggcaagggcagaggaacttg 311
            ||||||||||||||||||||
Sbjct: 1647 ggcaagggcagaggaacttg 1628
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>gb|AC125332.3| Mus musculus BAC clone RP23-113I20 from 3, complete sequence
          Length = 220068

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 289    catggcaagggcagaggaac 308
              ||||||||||||||||||||
Sbjct: 148711 catggcaagggcagaggaac 148730
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>gb|AC121928.2| Mus musculus BAC clone RP24-204F1 from 3, complete sequence
          Length = 178387

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    catggcaagggcagaggaac 308
              ||||||||||||||||||||
Sbjct: 151789 catggcaagggcagaggaac 151770
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>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the
             HLA-DPA1 gene for major histocompatibility complex, class
             II, DP alpha 1, the HLA-DPB1 gene for major
             histocompatibility complex, class II, DP beta 1, a
             ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2
             pseudogene for major histocompatibility complex, class II,
             DP alpha 2, a pseudogene similar to part of collagens, a
             novel protein similar to major histocompatibility complex,
             class II, DP beta 2 (pseudogene), a major
             histocompatibility complex, class II, DP beta 1
             pseudogene, two putative novel transcripts, the COL11A2
             gene for collagen, type XI, alpha 2, the RXRB gene for
             retinoid X receptor, beta, the HKE4 gene for HLA-class II
             region expressed gene KE4, the 5' end of the HSD17B8 gene
             for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG
             islands, complete sequence
          Length = 187964

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   tggcaagggcagaggaactt 310
             ||||||||||||||||||||
Sbjct: 38046 tggcaagggcagaggaactt 38027
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>emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on chromosome 6 Contains the
             HLA-DOA, HLA-DPA1 and HLA-DPB1 genes for major
             histocompatibility complex class II proteins DO alpha, DP
             alpha 1 and DP beta 1, the HLA-DPA2 major
             histocompatibility complex class II DP alpha 2 pseudogene,
             ribosomal protein L32 pseudogene RPL32P1, a pseudogene
             similar to part of collagens, the 5' end of an HLA class
             II histocompatibility antigen D or S beta pseudogene, the
             5' end of a novel protein similar to major
             histocompatibility complex class II DP beta 1 precursor
             and a CpG island, complete sequence
          Length = 124899

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   tggcaagggcagaggaactt 310
             ||||||||||||||||||||
Sbjct: 63756 tggcaagggcagaggaactt 63737
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>gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 map 14, complete sequence
          Length = 180338

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     ttaggactggcaggaggctt 92
              ||||||||||||||||||||
Sbjct: 173120 ttaggactggcaggaggctt 173101
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>emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chromosome 6, complete
             sequence
          Length = 119898

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   tggcaagggcagaggaactt 310
             ||||||||||||||||||||
Sbjct: 58192 tggcaagggcagaggaactt 58173
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>emb|BX826362.1|CNS0A4FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB19ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 714

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 275 gttgtactgggatccatggcaagg 298
           |||||| |||||||||||||||||
Sbjct: 678 gttgtattgggatccatggcaagg 655
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>gb|AC012451.8| Homo sapiens BAC clone RP11-414K19 from 2, complete sequence
          Length = 188121

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    ggcaagggcagaggaacttg 311
              ||||||||||||||||||||
Sbjct: 179433 ggcaagggcagaggaacttg 179452


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,975,271
Number of Sequences: 3902068
Number of extensions: 1975271
Number of successful extensions: 31815
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31603
Number of HSP's gapped (non-prelim): 196
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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