ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20p14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY758233.1| Hordeum vulgare subsp. vulgare cultivar Morex BM5a gene, complete cds Length = 12080 Score = 523 bits (264), Expect = e-145 Identities = 299/304 (98%), Gaps = 5/304 (1%) Strand = Plus / Minus Query: 1 taaggtcctgatt-atttatttt-aagaat-acaat-tacacaacgctcatattcgatag 56 ||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||| Sbjct: 11293 taaggtcctgatttatttattttcaagaatcacaatatacacaacgctcatattcgatag 11234 Query: 57 gttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11233 gttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtc 11174 Query: 117 actcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgg 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11173 actcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgg 11114 Query: 177 aaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctacttttact 236 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 11113 aaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctac-tttact 11055 Query: 237 ctgatttcttttcctctcccctccatggggttagcatgttcgcaaccgcatgatacacca 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11054 ctgatttcttttcctctcccctccatggggttagcatgttcgcaaccgcatgatacacca 10995 Query: 297 ggct 300 |||| Sbjct: 10994 ggct 10991
>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete sequence Length = 101158 Score = 523 bits (264), Expect = e-145 Identities = 299/304 (98%), Gaps = 5/304 (1%) Strand = Plus / Minus Query: 1 taaggtcctgatt-atttatttt-aagaat-acaat-tacacaacgctcatattcgatag 56 ||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||| Sbjct: 63014 taaggtcctgatttatttattttcaagaatcacaatatacacaacgctcatattcgatag 62955 Query: 57 gttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62954 gttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtc 62895 Query: 117 actcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgg 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62894 actcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgg 62835 Query: 177 aaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctacttttact 236 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 62834 aaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctac-tttact 62776 Query: 237 ctgatttcttttcctctcccctccatggggttagcatgttcgcaaccgcatgatacacca 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62775 ctgatttcttttcctctcccctccatggggttagcatgttcgcaaccgcatgatacacca 62716 Query: 297 ggct 300 |||| Sbjct: 62715 ggct 62712
>gb|AY750995.1| Hordeum vulgare subsp. vulgare cultivar Morex VRN-H1 gene, complete cds Length = 12360 Score = 523 bits (264), Expect = e-145 Identities = 299/304 (98%), Gaps = 5/304 (1%) Strand = Plus / Minus Query: 1 taaggtcctgatt-atttatttt-aagaat-acaat-tacacaacgctcatattcgatag 56 ||||||||||||| ||||||||| |||||| ||||| ||||||||||||||||||||||| Sbjct: 12063 taaggtcctgatttatttattttcaagaatcacaatatacacaacgctcatattcgatag 12004 Query: 57 gttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtc 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12003 gttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtc 11944 Query: 117 actcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgg 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11943 actcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgg 11884 Query: 177 aaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctacttttact 236 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 11883 aaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctac-tttact 11825 Query: 237 ctgatttcttttcctctcccctccatggggttagcatgttcgcaaccgcatgatacacca 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11824 ctgatttcttttcctctcccctccatggggttagcatgttcgcaaccgcatgatacacca 11765 Query: 297 ggct 300 |||| Sbjct: 11764 ggct 11761
>emb|AJ249144.1|HVU249144 Hordeum vulgare mRNA for MADS-box protein 5 (m5 gene) Length = 1196 Score = 494 bits (249), Expect = e-137 Identities = 262/265 (98%), Gaps = 1/265 (0%) Strand = Plus / Minus Query: 36 cacaacgctcatattcgataggttaattcacagaaacaacacccaggagcaacgggtatc 95 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1196 cacaacgctcatattcgataggttaattcacagaaacaacacccaggagcaacggatatc 1137 Query: 96 atcgaaagttgaaaattcgtcactcatgctacatataaattacatggtagattactcgta 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1136 atcgaaagttgaaaattcgtcactcatgctacatataaattacatggtagattactcgta 1077 Query: 156 cagccatctcagcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattc 215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1076 cagccatctcagcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattc 1017 Query: 216 ctgcagcttgctacttttactctgatttcttttcctctcccctccatggggttagcatgt 275 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1016 ctgcagcttgctgc-tttactctgatttcttttcctctcccctccatggggttagcatgt 958 Query: 276 tcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||| Sbjct: 957 tcgcaaccgcatgatacaccaggct 933
>gb|AY750993.1| Hordeum vulgare cultivar Strider VRN-H1 gene, complete cds; and transposon MITE-like and retrotransposon Lolaog, complete sequence Length = 17220 Score = 480 bits (242), Expect = e-132 Identities = 249/250 (99%), Gaps = 1/250 (0%) Strand = Plus / Minus Query: 51 cgataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaa 110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17220 cgataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaa 17161 Query: 111 ttcgtcactcatgctacatataaattacatggtagattactcgtacagccatctcagccc 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17160 ttcgtcactcatgctacatataaattacatggtagattactcgtacagccatctcagccc 17101 Query: 171 aggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctact 230 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17100 aggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctac- 17042 Query: 231 tttactctgatttcttttcctctcccctccatggggttagcatgttcgcaaccgcatgat 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17041 tttactctgatttcttttcctctcccctccatggggttagcatgttcgcaaccgcatgat 16982 Query: 291 acaccaggct 300 |||||||||| Sbjct: 16981 acaccaggct 16972
>gb|AY758238.1| Hordeum vulgare cultivar Dairokkaku BM5a mRNA, complete cds Length = 1153 Score = 444 bits (224), Expect = e-122 Identities = 231/232 (99%), Gaps = 1/232 (0%) Strand = Plus / Minus Query: 69 aaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctaca 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 aaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctaca 1094 Query: 129 tataaattacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactga 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 tataaattacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactga 1034 Query: 189 ggtggacgaagtgaaatatacacattcctgcagcttgctacttttactctgatttctttt 248 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1033 ggtggacgaagtgaaatatacacattcctgcagcttgctac-tttactctgatttctttt 975 Query: 249 cctctcccctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 cctctcccctccatggggttagcatgttcgcaaccgcatgatacaccaggct 923
>gb|AY758237.1| Hordeum vulgare cultivar Golden Promise BM5a mRNA, complete cds Length = 1157 Score = 444 bits (224), Expect = e-122 Identities = 231/232 (99%), Gaps = 1/232 (0%) Strand = Plus / Minus Query: 69 aaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctaca 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1157 aaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctaca 1098 Query: 129 tataaattacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactga 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1097 tataaattacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactga 1038 Query: 189 ggtggacgaagtgaaatatacacattcctgcagcttgctacttttactctgatttctttt 248 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1037 ggtggacgaagtgaaatatacacattcctgcagcttgctac-tttactctgatttctttt 979 Query: 249 cctctcccctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 978 cctctcccctccatggggttagcatgttcgcaaccgcatgatacaccaggct 927
>gb|AY758236.1| Hordeum vulgare subsp. vulgare cultivar Triumph BM5a mRNA, complete cds Length = 1145 Score = 444 bits (224), Expect = e-122 Identities = 231/232 (99%), Gaps = 1/232 (0%) Strand = Plus / Minus Query: 69 aaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctaca 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1145 aaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctaca 1086 Query: 129 tataaattacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactga 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1085 tataaattacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactga 1026 Query: 189 ggtggacgaagtgaaatatacacattcctgcagcttgctacttttactctgatttctttt 248 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1025 ggtggacgaagtgaaatatacacattcctgcagcttgctac-tttactctgatttctttt 967 Query: 249 cctctcccctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 cctctcccctccatggggttagcatgttcgcaaccgcatgatacaccaggct 915
>gb|AY758235.1| Hordeum vulgare subsp. vulgare cultivar Igri BM5a mRNA, complete cds Length = 1153 Score = 436 bits (220), Expect = e-119 Identities = 230/232 (99%), Gaps = 1/232 (0%) Strand = Plus / Minus Query: 69 aaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctaca 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 aaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctaca 1094 Query: 129 tataaattacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactga 188 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 aataaattacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactga 1034 Query: 189 ggtggacgaagtgaaatatacacattcctgcagcttgctacttttactctgatttctttt 248 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1033 ggtggacgaagtgaaatatacacattcctgcagcttgctac-tttactctgatttctttt 975 Query: 249 cctctcccctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 cctctcccctccatggggttagcatgttcgcaaccgcatgatacaccaggct 923
>gb|AY866486.1| Hordeum vulgare subsp. vulgare cultivar Triumph MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1105 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1046 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1045 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 986 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 985 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 927 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 926 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 882
>gb|AY785835.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1113 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1054 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 994 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 993 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 935 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 890
>gb|AY785834.1| Hordeum vulgare subsp. vulgare cultivar Nure MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1113 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1054 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 994 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 993 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 935 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 890
>gb|AY785833.1| Hordeum vulgare subsp. vulgare cultivar Igri MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1113 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1054 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 994 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 993 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 935 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 890
>gb|AY785832.1| Hordeum vulgare subsp. spontaneum cultivar OSU11 Caesarea 26-24 MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1117 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1117 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1058 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1057 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 998 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 997 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 939 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 938 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 894
>gb|AY785831.1| Hordeum vulgare subsp. vulgare cultivar Tremois MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1113 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1054 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 994 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 993 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 935 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 890
>gb|AY785830.1| Hordeum vulgare subsp. vulgare cultivar Strider MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1113 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1054 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 994 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 993 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 935 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 890
>gb|AY785829.1| Hordeum vulgare subsp. vulgare cultivar Harrington MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1117 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1117 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1058 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1057 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 998 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 997 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 939 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 938 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 894
>gb|AY785828.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1113 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1054 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 994 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 993 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 935 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 890
>gb|AY785827.1| Hordeum vulgare subsp. vulgare cultivar 88Ab536 MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1113 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1054 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 994 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 993 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 935 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 890
>gb|AY785826.1| Hordeum vulgare subsp. vulgare cultivar Morex MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1117 Score = 430 bits (217), Expect = e-117 Identities = 224/225 (99%), Gaps = 1/225 (0%) Strand = Plus / Minus Query: 76 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1117 acccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaat 1058 Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1057 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 998 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 997 gaagtgaaatatacacattcctgcagcttgctac-tttactctgatttcttttcctctcc 939 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 938 cctccatggggttagcatgttcgcaaccgcatgatacaccaggct 894
>gb|AY785825.1| Hordeum vulgare subsp. vulgare cultivar Morex MADS-box protein HvBM5A (BM5A) mRNA, complete cds Length = 1151 Score = 389 bits (196), Expect = e-105 Identities = 203/204 (99%), Gaps = 1/204 (0%) Strand = Plus / Minus Query: 97 tcgaaagttgaaaattcgtcactcatgctacatataaattacatggtagattactcgtac 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1129 tcgaaagttgaaaattcgtcactcatgctacatataaattacatggtagattactcgtac 1070 Query: 157 agccatctcagcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcc 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1069 agccatctcagcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcc 1010 Query: 217 tgcagcttgctacttttactctgatttcttttcctctcccctccatggggttagcatgtt 276 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1009 tgcagcttgctac-tttactctgatttcttttcctctcccctccatggggttagcatgtt 951 Query: 277 cgcaaccgcatgatacaccaggct 300 |||||||||||||||||||||||| Sbjct: 950 cgcaaccgcatgatacaccaggct 927
>gb|DQ146421.1| Triticum monococcum strain PI503874 VRN1 (VRN1) gene, complete cds Length = 16224 Score = 281 bits (142), Expect = 6e-73 Identities = 243/270 (90%), Gaps = 5/270 (1%) Strand = Plus / Minus Query: 2 aaggtcctgatt-atttatttt-aagaat-acaat-tacacaacgctcatattcgatagg 57 |||||||||||| ||||||||| |||||| ||||| ||||||| ||||||| | |||||| Sbjct: 15867 aaggtcctgatttatttattttcaagaatcacaatatacacaatgctcatagttgatagg 15808 Query: 58 ttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtca 117 |||||||||| ||||||||||||| || ||||||||||| |||| |||||||||| ||| Sbjct: 15807 ttaattcacataaacaacacccagtagagacgggtatcatggaaacttgaaaattcatca 15748 Query: 118 ctcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgga 177 |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 15747 ctcaagctacatatagattacatggtaaattactcgtacagccatctcagcccagctggg 15688 Query: 178 aaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctacttttactc 237 | |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 15687 agggaaactgaggtggaccaagtgaaatatacacatcgctgcagcttgctac-tttactc 15629 Query: 238 tgatttcttttcctctcccctccatggggt 267 |||||||||||||| | ||||||| ||||| Sbjct: 15628 tgatttcttttccttttccctccaaggggt 15599
>gb|DQ146422.1| Triticum monococcum strain PI326317 VRN1 (VRN1) gene, complete cds Length = 15688 Score = 281 bits (142), Expect = 6e-73 Identities = 243/270 (90%), Gaps = 5/270 (1%) Strand = Plus / Minus Query: 2 aaggtcctgatt-atttatttt-aagaat-acaat-tacacaacgctcatattcgatagg 57 |||||||||||| ||||||||| |||||| ||||| ||||||| ||||||| | |||||| Sbjct: 15331 aaggtcctgatttatttattttcaagaatcacaatatacacaatgctcatagttgatagg 15272 Query: 58 ttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtca 117 |||||||||| ||||||||||||| || ||||||||||| |||| |||||||||| ||| Sbjct: 15271 ttaattcacataaacaacacccagtagagacgggtatcatggaaacttgaaaattcatca 15212 Query: 118 ctcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgga 177 |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 15211 ctcaagctacatatagattacatggtaaattactcgtacagccatctcagcccagctggg 15152 Query: 178 aaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctacttttactc 237 | |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 15151 agggaaactgaggtggaccaagtgaaatatacacatcgctgcagcttgctac-tttactc 15093 Query: 238 tgatttcttttcctctcccctccatggggt 267 |||||||||||||| | ||||||| ||||| Sbjct: 15092 tgatttcttttccttttccctccaaggggt 15063
>gb|DQ146423.1| Triticum monococcum strain PI306540 VRN1 (VRN1) gene, complete cds Length = 16209 Score = 281 bits (142), Expect = 6e-73 Identities = 243/270 (90%), Gaps = 5/270 (1%) Strand = Plus / Minus Query: 2 aaggtcctgatt-atttatttt-aagaat-acaat-tacacaacgctcatattcgatagg 57 |||||||||||| ||||||||| |||||| ||||| ||||||| ||||||| | |||||| Sbjct: 15852 aaggtcctgatttatttattttcaagaatcacaatatacacaatgctcatagttgatagg 15793 Query: 58 ttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtca 117 |||||||||| ||||||||||||| || ||||||||||| |||| |||||||||| ||| Sbjct: 15792 ttaattcacataaacaacacccagtagagacgggtatcatggaaacttgaaaattcatca 15733 Query: 118 ctcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgga 177 |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 15732 ctcaagctacatatagattacatggtaaattactcgtacagccatctcagcccagctggg 15673 Query: 178 aaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctacttttactc 237 | |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 15672 agggaaactgaggtggaccaagtgaaatatacacatcgctgcagcttgctac-tttactc 15614 Query: 238 tgatttcttttcctctcccctccatggggt 267 |||||||||||||| | ||||||| ||||| Sbjct: 15613 tgatttcttttccttttccctccaaggggt 15584
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 281 bits (142), Expect = 6e-73 Identities = 243/270 (90%), Gaps = 5/270 (1%) Strand = Plus / Minus Query: 2 aaggtcctgatt-atttatttt-aagaat-acaat-tacacaacgctcatattcgatagg 57 |||||||||||| ||||||||| |||||| ||||| ||||||| ||||||| | |||||| Sbjct: 82403 aaggtcctgatttatttattttcaagaatcacaatatacacaatgctcatagttgatagg 82344 Query: 58 ttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaattcgtca 117 |||||||||| ||||||||||||| || ||||||||||| |||| |||||||||| ||| Sbjct: 82343 ttaattcacataaacaacacccagtagagacgggtatcatggaaacttgaaaattcatca 82284 Query: 118 ctcatgctacatataaattacatggtagattactcgtacagccatctcagcccaggtgga 177 |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| Sbjct: 82283 ctcaagctacatatagattacatggtaaattactcgtacagccatctcagcccagctggg 82224 Query: 178 aaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctacttttactc 237 | |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| Sbjct: 82223 agggaaactgaggtggaccaagtgaaatatacacatcgctgcagcttgctac-tttactc 82165 Query: 238 tgatttcttttcctctcccctccatggggt 267 |||||||||||||| | ||||||| ||||| Sbjct: 82164 tgatttcttttccttttccctccaaggggt 82135
>gb|AY758234.1| Hordeum vulgare subsp. vulgare cultivar Morex BM5b gene, partial cds Length = 4954 Score = 266 bits (134), Expect = 4e-68 Identities = 156/162 (96%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3791 tacatggtaatttactcgtacagccatctcagcccaggtggaaaggaaactgaagtggac 3732 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 3731 gaagtgaaatatacacattgctgcagcttgctac-tttactctgatttcttttcctctcc 3673 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccag 297 |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3672 cctccatggggttagcgtgttcgcaaccgcatgatacaccag 3631 Score = 176 bits (89), Expect = 3e-41 Identities = 101/105 (96%) Strand = Plus / Minus Query: 34 tacacaacgctcatattcgataggttaattcacagaaacaacacccaggagcaacgggta 93 |||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct: 3987 tacacaaccctcatatttgataggttaattcacagaaacaacacccaggagctacgggta 3928 Query: 94 tcatcgaaagttgaaaattcgtcactcatgctacatataaattac 138 |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 3927 tcatggaaagttgaaaattcgtcactcatgctacatataaattac 3883
>gb|AY747601.1| Triticum aestivum cultivar Triple Dirk D line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12464 Score = 266 bits (134), Expect = 4e-68 Identities = 192/210 (91%), Gaps = 1/210 (0%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaat 111 |||||||||||||||| ||||||||||||| || ||||||||||| |||| |||||||| Sbjct: 12460 gataggttaattcacataaacaacacccagtagagacgggtatcatggaaacttgaaaat 12401 Query: 112 tcgtcactcatgctacatataaattacatggtagattactcgtacagccatctcagccca 171 || ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 12400 tcatcactcaagctacatatagattacatggtaaattactcgtacagccatctcagccca 12341 Query: 172 ggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctactt 231 | ||| | |||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct: 12340 gctgggagggaaactgaggtggacaaagtgaaatatacacatcgctgcagcttgctac-t 12282 Query: 232 ttactctgatttcttttcctctcccctcca 261 |||||||||||||||||||| ||||||||| Sbjct: 12281 ttactctgatttcttttcctttcccctcca 12252
>gb|AY747600.1| Triticum aestivum cultivar Triple Dirk C line VRN-A1 (VRN-A1) gene, complete cds; and Stowaway MITE and gypsy retrotransposon Sukkula, complete sequence Length = 12233 Score = 266 bits (134), Expect = 4e-68 Identities = 192/210 (91%), Gaps = 1/210 (0%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaat 111 |||||||||||||||| ||||||||||||| || ||||||||||| |||| |||||||| Sbjct: 12229 gataggttaattcacataaacaacacccagtagagacgggtatcatggaaacttgaaaat 12170 Query: 112 tcgtcactcatgctacatataaattacatggtagattactcgtacagccatctcagccca 171 || ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 12169 tcatcactcaagctacatatagattacatggtaaattactcgtacagccatctcagccca 12110 Query: 172 ggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctactt 231 | ||| | |||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct: 12109 gctgggagggaaactgaggtggacaaagtgaaatatacacatcgctgcagcttgctac-t 12051 Query: 232 ttactctgatttcttttcctctcccctcca 261 |||||||||||||||||||| ||||||||| Sbjct: 12050 ttactctgatttcttttcctttcccctcca 12021
>gb|AY747599.1| Triticum aestivum cultivar IL369 line VRN-A1 (VRN-A1) gene, complete cds; and gypsy retrotransposon Sukkula, complete sequence Length = 6730 Score = 266 bits (134), Expect = 4e-68 Identities = 192/210 (91%), Gaps = 1/210 (0%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaat 111 |||||||||||||||| ||||||||||||| || ||||||||||| |||| |||||||| Sbjct: 6726 gataggttaattcacataaacaacacccagtagagacgggtatcatggaaacttgaaaat 6667 Query: 112 tcgtcactcatgctacatataaattacatggtagattactcgtacagccatctcagccca 171 || ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 6666 tcatcactcaagctacatatagattacatggtaaattactcgtacagccatctcagccca 6607 Query: 172 ggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctactt 231 | ||| | |||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct: 6606 gctgggagggaaactgaggtggacaaagtgaaatatacacatcgctgcagcttgctac-t 6548 Query: 232 ttactctgatttcttttcctctcccctcca 261 |||||||||||||||||||| ||||||||| Sbjct: 6547 ttactctgatttcttttcctttcccctcca 6518
>gb|AY747598.1| Triticum turgidum cultivar Langdon clone BAC 1256C17 VRN-A1 (VRN-A1) gene, complete cds Length = 5065 Score = 266 bits (134), Expect = 4e-68 Identities = 192/210 (91%), Gaps = 1/210 (0%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaat 111 |||||||||||||||| ||||||||||||| || ||||||||||| |||| |||||||| Sbjct: 5061 gataggttaattcacataaacaacacccagtagagacgggtatcatggaaacttgaaaat 5002 Query: 112 tcgtcactcatgctacatataaattacatggtagattactcgtacagccatctcagccca 171 || ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct: 5001 tcatcactcaagctacatatagattacatggtaaattactcgtacagccatctcagccca 4942 Query: 172 ggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttgctactt 231 | ||| | |||||||||||||||| ||||||||||||||||| |||||||||||||| | Sbjct: 4941 gctgggagggaaactgaggtggacaaagtgaaatatacacatcgctgcagcttgctac-t 4883 Query: 232 ttactctgatttcttttcctctcccctcca 261 |||||||||||||||||||| ||||||||| Sbjct: 4882 ttactctgatttcttttcctttcccctcca 4853
>gb|AY887088.1| Hordeum vulgare subsp. vulgare clone BAC 315I20 VRN-H1 (AP1b) pseudogene, partial sequence Length = 4018 Score = 266 bits (134), Expect = 4e-68 Identities = 156/162 (96%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 136 tacatggtagattactcgtacagccatctcagcccaggtggaaaggaaactgaggtggac 195 ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 3839 tacatggtaatttactcgtacagccatctcagcccaggtggaaaggaaactgaagtggac 3780 Query: 196 gaagtgaaatatacacattcctgcagcttgctacttttactctgatttcttttcctctcc 255 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct: 3779 gaagtgaaatatacacattgctgcagcttgctac-tttactctgatttcttttcctctcc 3721 Query: 256 cctccatggggttagcatgttcgcaaccgcatgatacaccag 297 |||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3720 cctccatggggttagcgtgttcgcaaccgcatgatacaccag 3679 Score = 159 bits (80), Expect = 6e-36 Identities = 86/88 (97%) Strand = Plus / Minus Query: 51 cgataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaa 110 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 4018 cgataggttaattcacagaaacaacacccaggagctacgggtatcatggaaagttgaaaa 3959 Query: 111 ttcgtcactcatgctacatataaattac 138 |||||||||||||||||||||||||||| Sbjct: 3958 ttcgtcactcatgctacatataaattac 3931
>emb|AJ577374.1|TAE577374 Triticum aestivum partial mRNA for putative MADS-box transcription factor (mads#11 gene) Length = 770 Score = 220 bits (111), Expect = 2e-54 Identities = 160/175 (91%), Gaps = 1/175 (0%) Strand = Plus / Minus Query: 87 acgggtatcatcgaaagttgaaaattcgtcactcatgctacatataaattacatggtaga 146 ||||||||||| |||| |||||||||| ||||||| |||||||||| ||||||||||| | Sbjct: 750 acgggtatcatggaaacttgaaaattcatcactcaagctacatatagattacatggtaaa 691 Query: 147 ttactcgtacagccatctcagcccaggtggaaaggaaactgaggtggacgaagtgaaata 206 |||||||||||||||||||||||||| ||| | |||||||||||||||| ||| |||||| Sbjct: 690 ttactcgtacagccatctcagcccagctgggagggaaactgaggtggacaaagcgaaata 631 Query: 207 tacacattcctgcagcttgctacttttactctgatttcttttcctctcccctcca 261 ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 630 tacacatcgctgcagcttgctac-tttactctgatttcttttcctttcccctcca 577
>gb|AY896053.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 560559 MADS box transcription factor (Vrn1) gene, partial cds Length = 1214 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1214 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1156 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1155 gggttagcatgttcgcaaccgcatgatacaccaggct 1119
>gb|AY896052.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 559556 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1260 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1202 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1201 gggttagcatgttcgcaaccgcatgatacaccaggct 1165
>gb|AY896048.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 420916 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1261 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1203 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1202 gggttagcatgttcgcaaccgcatgatacaccaggct 1166
>gb|AY896047.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 420913 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1261 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1203 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1202 gggttagcatgttcgcaaccgcatgatacaccaggct 1166
>gb|AY896044.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 401370 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1261 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1203 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1202 gggttagcatgttcgcaaccgcatgatacaccaggct 1166
>gb|AY896043.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 366446 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1260 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1202 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1201 gggttagcatgttcgcaaccgcatgatacaccaggct 1165
>gb|AY896042.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293411 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1260 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1202 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1201 gggttagcatgttcgcaaccgcatgatacaccaggct 1165
>gb|AY896041.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293409 MADS box transcription factor (Vrn1) gene, partial cds Length = 1259 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1259 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1201 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1200 gggttagcatgttcgcaaccgcatgatacaccaggct 1164
>gb|AY896040.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 293402 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1260 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1202 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1201 gggttagcatgttcgcaaccgcatgatacaccaggct 1165
>gb|AY896039.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 268242 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1261 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1203 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1202 gggttagcatgttcgcaaccgcatgatacaccaggct 1166
>gb|AY896038.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 254894 MADS box transcription factor (Vrn1) gene, partial cds Length = 1261 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1261 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1203 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1202 gggttagcatgttcgcaaccgcatgatacaccaggct 1166
>gb|AY896037.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 236388 MADS box transcription factor (Vrn1) gene, partial cds Length = 1259 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1259 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1201 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1200 gggttagcatgttcgcaaccgcatgatacaccaggct 1164
>gb|AY896036.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 220523 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1260 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1202 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1201 gggttagcatgttcgcaaccgcatgatacaccaggct 1165
>gb|AY896035.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 212306 MADS box transcription factor (Vrn1) gene, partial cds Length = 1260 Score = 176 bits (89), Expect = 3e-41 Identities = 96/97 (98%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1260 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1202 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 ||||||||||||||||||||||||||||||||||||| Sbjct: 1201 gggttagcatgttcgcaaccgcatgatacaccaggct 1165
>gb|AY896051.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 531957 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 168 bits (85), Expect = 6e-39 Identities = 95/97 (97%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1262 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1204 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||| |||||||||||||||||||||||||||| Sbjct: 1203 gggttagcgtgttcgcaaccgcatgatacaccaggct 1167
>gb|AY896050.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 531853 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 168 bits (85), Expect = 6e-39 Identities = 95/97 (97%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1262 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1204 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||| |||||||||||||||||||||||||||| Sbjct: 1203 gggttagcgtgttcgcaaccgcatgatacaccaggct 1167
>gb|AY896049.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 466460 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 168 bits (85), Expect = 6e-39 Identities = 95/97 (97%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1262 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1204 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||| |||||||||||||||||||||||||||| Sbjct: 1203 gggttagcgtgttcgcaaccgcatgatacaccaggct 1167
>gb|AY896046.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 420911 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 168 bits (85), Expect = 6e-39 Identities = 95/97 (97%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1262 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1204 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||| |||||||||||||||||||||||||||| Sbjct: 1203 gggttagcgtgttcgcaaccgcatgatacaccaggct 1167
>gb|AY896045.1| Hordeum vulgare subsp. spontaneum voucher NPGS PI 406276 MADS box transcription factor (Vrn1) gene, partial cds Length = 1262 Score = 168 bits (85), Expect = 6e-39 Identities = 95/97 (97%), Gaps = 1/97 (1%) Strand = Plus / Minus Query: 204 atatacacattcctgcagcttgctacttttactctgatttcttttcctctcccctccatg 263 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1262 atatacacattcctgcagcttgctacttt-actctgatttcttttcctctcccctccatg 1204 Query: 264 gggttagcatgttcgcaaccgcatgatacaccaggct 300 |||||||| |||||||||||||||||||||||||||| Sbjct: 1203 gggttagcgtgttcgcaaccgcatgatacaccaggct 1167
>gb|AY280870.1| Triticum aestivum MADS-box protein TaVRT-1 mRNA, complete cds Length = 1210 Score = 135 bits (68), Expect = 9e-29 Identities = 121/136 (88%), Gaps = 2/136 (1%) Strand = Plus / Minus Query: 166 agcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttg 225 ||||||| ||| | |||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 1077 agcccagctgggagggaaactgaggtggacaaagtgaaatatacacatcactgcagcttg 1018 Query: 226 ctacttttactctgatttcttttcctctcccctccatggggtta-gcatgttcgcaaccg 284 |||| ||||||||||||||||||||| ||||||||| ||||| | ||||| | ||||||| Sbjct: 1017 ctac-tttactctgatttcttttcctttcccctccaaggggtcaggcatgctagcaaccg 959 Query: 285 catgatacaccaggct 300 || |||||||||||| Sbjct: 958 caacatacaccaggct 943 Score = 111 bits (56), Expect = 1e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 33 ttacacaacgctcatattcgataggttaattcacagaaacaacacccaggagcaacgggt 92 |||||||| ||||||||| |||||||||||||||| ||||||||||| | |||||| Sbjct: 1194 ttacacaatgctcatatttgataggttaattcacataaacaacacccgctcgagacgggt 1135 Query: 93 atcatcgaaagttgaaaattcgtcactcatgctacatataaattacatggta 144 ||||| |||| |||||||||| ||||||| |||||||||| ||||||||||| Sbjct: 1134 atcatggaaacttgaaaattcatcactcaagctacatatagattacatggta 1083
>gb|AY747604.1| Triticum aestivum cultivar Triple Dirk C line VRN-B1 (VRN-B1) gene, complete cds Length = 13141 Score = 135 bits (68), Expect = 9e-29 Identities = 121/136 (88%), Gaps = 2/136 (1%) Strand = Plus / Minus Query: 166 agcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttg 225 ||||||| ||| | |||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 13039 agcccagctgggagggaaactgaggtggacaaagtgaaatatacacatcactgcagcttg 12980 Query: 226 ctacttttactctgatttcttttcctctcccctccatggggtta-gcatgttcgcaaccg 284 |||| ||||||||||||||||||||| ||||||||| ||||| | ||||| | ||||||| Sbjct: 12979 ctac-tttactctgatttcttttcctttcccctccaaggggtcaggcatgctagcaaccg 12921 Query: 285 catgatacaccaggct 300 || |||||||||||| Sbjct: 12920 caacatacaccaggct 12905 Score = 89.7 bits (45), Expect = 5e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaat 111 |||||||||||||||| ||||||||||| | ||||||||||| |||| |||||||| Sbjct: 13137 gataggttaattcacataaacaacacccgctcgagacgggtatcatggaaacttgaaaat 13078 Query: 112 tcgtcactcatgctacatataaattacatggta 144 || ||||||| |||||||||| ||||||||||| Sbjct: 13077 tcatcactcaagctacatatagattacatggta 13045
>gb|AY747603.1| Triticum aestivum cultivar Triple Dirk B line VRN-B1 (VRN-B1) gene, complete cds Length = 6297 Score = 135 bits (68), Expect = 9e-29 Identities = 121/136 (88%), Gaps = 2/136 (1%) Strand = Plus / Minus Query: 166 agcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttg 225 ||||||| ||| | |||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 6195 agcccagctgggagggaaactgaggtggacaaagtgaaatatacacatcactgcagcttg 6136 Query: 226 ctacttttactctgatttcttttcctctcccctccatggggtta-gcatgttcgcaaccg 284 |||| ||||||||||||||||||||| ||||||||| ||||| | ||||| | ||||||| Sbjct: 6135 ctac-tttactctgatttcttttcctttcccctccaaggggtcaggcatgctagcaaccg 6077 Query: 285 catgatacaccaggct 300 || |||||||||||| Sbjct: 6076 caacatacaccaggct 6061 Score = 89.7 bits (45), Expect = 5e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaat 111 |||||||||||||||| ||||||||||| | ||||||||||| |||| |||||||| Sbjct: 6293 gataggttaattcacataaacaacacccgctcgagacgggtatcatggaaacttgaaaat 6234 Query: 112 tcgtcactcatgctacatataaattacatggta 144 || ||||||| |||||||||| ||||||||||| Sbjct: 6233 tcatcactcaagctacatatagattacatggta 6201
>gb|AY747602.1| Triticum turgidum cultivar Langdon clone BAC 1225D16 VRN-B1 (VRN-B1) gene, complete cds Length = 13141 Score = 135 bits (68), Expect = 9e-29 Identities = 121/136 (88%), Gaps = 2/136 (1%) Strand = Plus / Minus Query: 166 agcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttg 225 ||||||| ||| | |||||||||||||||| ||||||||||||||||| |||||||||| Sbjct: 13039 agcccagctgggagggaaactgaggtggacaaagtgaaatatacacatcactgcagcttg 12980 Query: 226 ctacttttactctgatttcttttcctctcccctccatggggtta-gcatgttcgcaaccg 284 |||| ||||||||||||||||||||| ||||||||| ||||| | ||||| | ||||||| Sbjct: 12979 ctac-tttactctgatttcttttcctttcccctccaaggggtcaggcatgctagcaaccg 12921 Query: 285 catgatacaccaggct 300 || |||||||||||| Sbjct: 12920 caacatacaccaggct 12905 Score = 89.7 bits (45), Expect = 5e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaacacccaggagcaacgggtatcatcgaaagttgaaaat 111 |||||||||||||||| ||||||||||| | ||||||||||| |||| |||||||| Sbjct: 13137 gataggttaattcacataaacaacacccgctcgagacgggtatcatggaaacttgaaaat 13078 Query: 112 tcgtcactcatgctacatataaattacatggta 144 || ||||||| |||||||||| ||||||||||| Sbjct: 13077 tcatcactcaagctacatatagattacatggta 13045
>gb|AY747606.1| Triticum aestivum cultivar Triple Dirk C line VRN-D1 (VRN-D1) gene, complete cds Length = 12335 Score = 115 bits (58), Expect = 8e-23 Identities = 92/102 (90%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 166 agcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttg 225 ||||||| ||| | |||||||| ||||||| ||||||||||||||||| |||||||||| Sbjct: 12232 agcccagctgggagggaaactggggtggacaaagtgaaatatacacatcgctgcagcttg 12173 Query: 226 ctacttttactctgatttcttttcctctcccctccatggggt 267 |||| ||||||||||||||||||||| ||||||||| ||||| Sbjct: 12172 ctac-tttactctgatttcttttcctttcccctccaaggggt 12132 Score = 91.7 bits (46), Expect = 1e-15 Identities = 83/94 (88%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaaca-cccaggagcaacgggtatcatcgaaagttgaaaa 110 |||||||||||||||| |||||||| |||| || ||||||||||| |||| ||||||| Sbjct: 12331 gataggttaattcacataaacaacatcccactagagacgggtatcatggaaacttgaaaa 12272 Query: 111 ttcgtcactcatgctacatataaattacatggta 144 ||| ||||||| |||||||||| ||||||||||| Sbjct: 12271 ttcatcactcaagctacatatagattacatggta 12238
>gb|AY747605.1| Aegilops tauschii BAC 22J2 VRN-D1 (VRN-D1) gene, complete cds Length = 12224 Score = 115 bits (58), Expect = 8e-23 Identities = 92/102 (90%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 166 agcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttg 225 ||||||| ||| | |||||||| ||||||| ||||||||||||||||| |||||||||| Sbjct: 12121 agcccagctgggagggaaactggggtggacaaagtgaaatatacacatcgctgcagcttg 12062 Query: 226 ctacttttactctgatttcttttcctctcccctccatggggt 267 |||| ||||||||||||||||||||| ||||||||| ||||| Sbjct: 12061 ctac-tttactctgatttcttttcctttcccctccaaggggt 12021 Score = 91.7 bits (46), Expect = 1e-15 Identities = 83/94 (88%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaaca-cccaggagcaacgggtatcatcgaaagttgaaaa 110 |||||||||||||||| |||||||| |||| || ||||||||||| |||| ||||||| Sbjct: 12220 gataggttaattcacataaacaacatcccactagagacgggtatcatggaaacttgaaaa 12161 Query: 111 ttcgtcactcatgctacatataaattacatggta 144 ||| ||||||| |||||||||| ||||||||||| Sbjct: 12160 ttcatcactcaagctacatatagattacatggta 12127
>gb|AY747597.1| Triticum aestivum cultivar Triple Dirk E line VRN-D1 (VRN-D1) gene, complete cds Length = 8100 Score = 115 bits (58), Expect = 8e-23 Identities = 92/102 (90%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 166 agcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttg 225 ||||||| ||| | |||||||| ||||||| ||||||||||||||||| |||||||||| Sbjct: 7997 agcccagctgggagggaaactggggtggacaaagtgaaatatacacatcgctgcagcttg 7938 Query: 226 ctacttttactctgatttcttttcctctcccctccatggggt 267 |||| ||||||||||||||||||||| ||||||||| ||||| Sbjct: 7937 ctac-tttactctgatttcttttcctttcccctccaaggggt 7897 Score = 91.7 bits (46), Expect = 1e-15 Identities = 83/94 (88%), Gaps = 1/94 (1%) Strand = Plus / Minus Query: 52 gataggttaattcacagaaacaaca-cccaggagcaacgggtatcatcgaaagttgaaaa 110 |||||||||||||||| |||||||| |||| || ||||||||||| |||| ||||||| Sbjct: 8096 gataggttaattcacataaacaacatcccactagagacgggtatcatggaaacttgaaaa 8037 Query: 111 ttcgtcactcatgctacatataaattacatggta 144 ||| ||||||| |||||||||| ||||||||||| Sbjct: 8036 ttcatcactcaagctacatatagattacatggta 8003
>dbj|AB007504.1| Triticum aestivum TaMADS#11 mRNA for MADS box transcription factor, complete cds Length = 1161 Score = 115 bits (58), Expect = 8e-23 Identities = 92/102 (90%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 166 agcccaggtggaaaggaaactgaggtggacgaagtgaaatatacacattcctgcagcttg 225 ||||||| ||| | |||||||| ||||||| ||||||||||||||||| |||||||||| Sbjct: 1002 agcccagctgggagggaaactggggtggacaaagtgaaatatacacatcgctgcagcttg 943 Query: 226 ctacttttactctgatttcttttcctctcccctccatggggt 267 |||| ||||||||||||||||||||| ||||||||| ||||| Sbjct: 942 ctac-tttactctgatttcttttcctttcccctccaaggggt 902 Score = 113 bits (57), Expect = 3e-22 Identities = 121/137 (88%), Gaps = 4/137 (2%) Strand = Plus / Minus Query: 12 ttatttatttt-aagaat-acaat-tacacaacgctcatattcgataggttaattcacag 68 ||||||||||| |||||| ||||| ||||||| ||||||||| |||||||||||||||| Sbjct: 1144 ttatttattttcaagaatcacaatatacacaatgctcatatttgataggttaattcacat 1085 Query: 69 aaacaaca-cccaggagcaacgggtatcatcgaaagttgaaaattcgtcactcatgctac 127 |||||||| |||| || ||||||||||| |||| |||||||||| ||||||| ||||| Sbjct: 1084 aaacaacatcccactagagacgggtatcatggaaacttgaaaattcatcactcaagctac 1025 Query: 128 atataaattacatggta 144 ||||| ||||||||||| Sbjct: 1024 atatagattacatggta 1008
>gb|AY198326.1| Lolium perenne MADS1 mRNA, complete cds Length = 1284 Score = 46.1 bits (23), Expect = 0.064 Identities = 29/31 (93%) Strand = Plus / Minus Query: 43 ctcatattcgataggttaattcacagaaaca 73 |||||||| ||||| |||||||||||||||| Sbjct: 1206 ctcatattggatagtttaattcacagaaaca 1176
>gb|AC103358.7| Mus musculus chromosome 19, clone RP24-358I11, complete sequence Length = 117340 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 234 actctgatttcttttcctctcc 255 |||||||||||||||||||||| Sbjct: 26709 actctgatttcttttcctctcc 26730
>emb|AL161452.19| Human DNA sequence from clone RP11-426A6 on chromosome 9 Contains the OBP2A gene for odorant-binding protein 2A, the LCN1 gene for lipocalin 1, the MRPS2 gene for mitochondrial ribosomal protein S2, gene MGC29761, a novel gene, gene KIAA0649, a novel gene, a novel gene, a suppressor of cytokine signaling 5 (SOCS5) pseudogene and two CpG islands, complete sequence Length = 153231 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 245 ttttcctctcccctccatgggg 266 |||||||||||||||||||||| Sbjct: 51042 ttttcctctcccctccatgggg 51021
>gb|AC157907.2| Mus musculus chromosome 19, clone RP23-79H21, complete sequence Length = 153518 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 234 actctgatttcttttcctctcc 255 |||||||||||||||||||||| Sbjct: 56837 actctgatttcttttcctctcc 56816
>emb|AL772398.7| Mouse DNA sequence from clone RP23-173J23 on chromosome 2, complete sequence Length = 200773 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 cttgctacttttactctgattt 243 |||||||||||||||||||||| Sbjct: 67070 cttgctacttttactctgattt 67091
>gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217496 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 tcttttcctctcccctccatg 263 ||||||||||||||||||||| Sbjct: 139234 tcttttcctctcccctccatg 139214
>emb|AL512663.4| Human DNA sequence from clone RP11-356H7 on chromosome 1, complete sequence Length = 75171 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 acatataaattacatggtaga 146 ||||||||||||||||||||| Sbjct: 24219 acatataaattacatggtaga 24199
>gb|AC158678.6| Mus musculus 6 BAC RP23-142I6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 217586 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 tcttttcctctcccctccatg 263 ||||||||||||||||||||| Sbjct: 164000 tcttttcctctcccctccatg 164020
>gb|AC153867.3| Mus musculus 6 BAC RP23-400K22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse6 BAC Library) complete sequence Length = 196838 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 tcttttcctctcccctccatg 263 ||||||||||||||||||||| Sbjct: 192924 tcttttcctctcccctccatg 192904
>gb|AC183300.4| Pan troglodytes BAC clone CH251-263P14 from chromosome 4, complete sequence Length = 171121 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 159854 tttcttttcctctcccctcc 159873 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 49290 tttcttttcctctcccctcc 49309
>gb|AY519500.1| Gallus gallus CNR/Pcdh-alpha gene cluster, complete sequence Length = 187517 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 attttaagaatacaattaca 37 |||||||||||||||||||| Sbjct: 180535 attttaagaatacaattaca 180516
>gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosome 18, complete sequence Length = 216041 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 81520 tttcttttcctctcccctcc 81501
>gb|AC117118.4| Rattus norvegicus 1 BAC CH230-161O8 (Children's Hospital Oakland Research Institute) complete sequence Length = 216036 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tcatgctacatataaattac 138 |||||||||||||||||||| Sbjct: 160116 tcatgctacatataaattac 160097
>gb|AC125109.3| Mus musculus BAC clone RP24-232H5 from chromosome 3, complete sequence Length = 165361 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 tcttttcctctcccctccat 262 |||||||||||||||||||| Sbjct: 142292 tcttttcctctcccctccat 142273
>gb|AC125074.3| Mus musculus BAC clone RP23-464N18 from chromosome 14, complete sequence Length = 181200 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 115317 tttcttttcctctcccctcc 115298
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gatttcttttcctctcccct 258 |||||||||||||||||||| Sbjct: 4111566 gatttcttttcctctcccct 4111547
>emb|AL365260.11| Human DNA sequence from clone RP11-433J22 on chromosome 1 Contains the GJA5 gene for gap junction protein, alpha 5, 40kDa (connexin 40) protein, complete sequence Length = 114412 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 ggaaaggaaactgaggtgga 194 |||||||||||||||||||| Sbjct: 43104 ggaaaggaaactgaggtgga 43085
>emb|AL139320.18| Human DNA sequence from clone RP11-154C3 on chromosome 13 Contains a cytochrome c oxidase subunit IV pseudogene, a novel gene, an aldo-keto reductase family 1, member B10 (aldose reductase) (AKR1B10) pseudogene, a novel gene, similar to RIKEN cDNA 1700086N05 and CpG island, complete sequence Length = 112107 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 236 tctgatttcttttcctctcc 255 |||||||||||||||||||| Sbjct: 46525 tctgatttcttttcctctcc 46544
>gb|AC015813.12| Homo sapiens, clone RP11-159D12, complete sequence Length = 181494 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 aggtggaaaggaaactgagg 190 |||||||||||||||||||| Sbjct: 131358 aggtggaaaggaaactgagg 131377
>gb|AC154575.2| Mus musculus BAC clone RP23-248E1 from chromosome 14, complete sequence Length = 210912 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 58360 tttcttttcctctcccctcc 58379
>gb|AC182643.2| Pan troglodytes BAC clone CH251-219K6 from chromosome 4, complete sequence Length = 176400 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 102601 tttcttttcctctcccctcc 102582
>gb|AC093521.3| Homo sapiens chromosome 5 clone RP11-152P24, complete sequence Length = 143970 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 acttttactctgatttcttttcct 251 ||||| |||||||||||||||||| Sbjct: 72929 actttaactctgatttcttttcct 72952
>gb|AC093890.3| Homo sapiens BAC clone RP11-673E1 from 4, complete sequence Length = 171358 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 68545 tttcttttcctctcccctcc 68526
>gb|AC104090.3| Homo sapiens BAC clone RP11-780M14 from 4, complete sequence Length = 101033 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 94746 tttcttttcctctcccctcc 94727
>gb|AC177797.3| Mus musculus BAC clone RP24-558G11 from chromosome y, complete sequence Length = 174066 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 catataaattacatggtagattac 150 |||||||| ||||||||||||||| Sbjct: 100712 catataaaatacatggtagattac 100735
>gb|S42926.1| large subunit ribosomal RNA [Pneumocystis carinii, host:man, Mitochondrial, 196 nt] Length = 196 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctgattatttattttaagaa 27 |||||||||||||||||||| Sbjct: 152 ctgattatttattttaagaa 133
>gb|S79766.1| rRNA large subunit [Pneumocystis carinii, host=human, HIV+ pneumocystis pneumonia patient, bronchoalveolar lavage fluid, Mitochondrial, 300 nt] Length = 300 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctgattatttattttaagaa 27 |||||||||||||||||||| Sbjct: 185 ctgattatttattttaagaa 166
>gb|S77852.1| large subunit rRNA {internal fragment} [Pneumocystis carinii, bronchoalveolar lavage, patient group 1 isolate, Mitochondrial, 299 nt] Length = 299 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctgattatttattttaagaa 27 |||||||||||||||||||| Sbjct: 184 ctgattatttattttaagaa 165
>gb|S77824.1| large-subunit rRNA {internal fragment} [Pneumocystis carinii, patient broncoscopic alveolar lavage isolate, Mitochondrial, 196 nt] Length = 196 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctgattatttattttaagaa 27 |||||||||||||||||||| Sbjct: 152 ctgattatttattttaagaa 133
>gb|AC048387.16| Homo sapiens chromosome 8, clone RP11-465K16, complete sequence Length = 193896 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 ttcttttcctctcccctcca 261 |||||||||||||||||||| Sbjct: 95990 ttcttttcctctcccctcca 95971
>gb|AF337535.1|AF337535 Pneumocystis carinii large subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 353 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctgattatttattttaagaa 27 |||||||||||||||||||| Sbjct: 218 ctgattatttattttaagaa 199
>gb|AC004757.2| Homo sapiens chromosome 17, clone CTB-117K16, complete sequence Length = 107156 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aggtggaaaggaaactgagg 190 |||||||||||||||||||| Sbjct: 82688 aggtggaaaggaaactgagg 82669
>gb|AC068466.4| Homo sapiens chromosome 8, clone RP11-370A22, complete sequence Length = 179597 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 ctacttttactctgatttct 245 |||||||||||||||||||| Sbjct: 121355 ctacttttactctgatttct 121374
>emb|AJ608260.1| Pneumocystis jiroveci mitochondrial partial LSU rRNA gene Length = 176 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctgattatttattttaagaa 27 |||||||||||||||||||| Sbjct: 148 ctgattatttattttaagaa 129
>emb|AL929331.15| Zebrafish DNA sequence from clone DKEY-16O9, complete sequence Length = 221062 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tttattttaagaatacaatt 34 |||||||||||||||||||| Sbjct: 45369 tttattttaagaatacaatt 45350
>emb|AL772154.4| Zebrafish DNA sequence from clone CH211-101N13 in linkage group 13, complete sequence Length = 173048 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 tttattttaagaatacaatt 34 |||||||||||||||||||| Sbjct: 58587 tttattttaagaatacaatt 58606
>gb|AF035378.1|AF035378 Lolium temulentum MADS-box protein 1 (MADS1) mRNA, complete cds Length = 1207 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 46 atattcgataggttaattcacagaaaca 73 ||||| ||||| |||||||||||||||| Sbjct: 1168 atattggatagtttaattcacagaaaca 1141
>gb|AC131790.4| Mus musculus BAC clone RP24-447L18 from 3, complete sequence Length = 170634 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 122835 tttcttttcctctcccctcc 122854
>gb|M58605.1|PMCMTRRP Pneumocystis carinii mitochondrial ribosomal RNA large subunit gene Length = 295 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ctgattatttattttaagaa 27 |||||||||||||||||||| Sbjct: 185 ctgattatttattttaagaa 166
>emb|AL807764.9| Mouse DNA sequence from clone RP23-400F8 on chromosome 4, complete sequence Length = 226637 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 tttcttttcctctcccctcc 260 |||||||||||||||||||| Sbjct: 93924 tttcttttcctctcccctcc 93943 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,273,428 Number of Sequences: 3902068 Number of extensions: 4273428 Number of successful extensions: 91125 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90906 Number of HSP's gapped (non-prelim): 152 length of query: 300 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 278 effective length of database: 17,147,199,772 effective search space: 4766921536616 effective search space used: 4766921536616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
