Clone Name	rbaal21e13
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	297	6e-78
2	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	274	8e-71
3	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	240	1e-60
4	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	200	1e-48
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	176	1e-41
6	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	168	3e-39
7	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	168	3e-39
8	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	145	5e-32
9	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	145	5e-32
10	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	2e-28
11	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	2e-28
12	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	2e-28
13	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	2e-28
14	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	2e-28
15	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	2e-28
16	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	2e-28
17	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	2e-28
18	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	2e-28
19	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	133	2e-28
20	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	7e-25
21	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	117	1e-23
22	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	7e-19
23	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	1e-11
24	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	1e-11
25	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	68	9e-09
26	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	68	9e-09
27	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	68	9e-09
28	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	68	9e-09
29	gb|AC138265.9| Mus musculus chromosome 5, clone RP23-41J13, comp...	40	2.1
30	gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosom...	40	2.1
31	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	2.1
32	gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, c...	40	2.1
33	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	2.1
34	gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, com...	38	8.3
35	emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in...	38	8.3
36	emb|CR759843.7| Zebrafish DNA sequence from clone DKEYP-82B4 in ...	38	8.3
37	emb|Z99106.2|BSUB0003 Bacillus subtilis complete genome (section...	38	8.3
38	emb|CR749167.8| Zebrafish DNA sequence from clone DKEY-23A17 in ...	38	8.3
39	gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome ...	38	8.3
40	dbj|AK166687.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f...	38	8.3
41	gb|AC084292.23|AC084292 Mus musculus 1 BAC RP23-254E8 (Roswell P...	38	8.3
42	emb|BX548173.6| Zebrafish DNA sequence from clone DKEY-47K16 in ...	38	8.3
43	dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic D...	38	8.3
44	dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D...	38	8.3
45	gb|AC130712.4| Mus musculus BAC clone RP23-125B4 from 1, complet...	38	8.3
46	emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chr...	38	8.3
47	dbj|AB001488.1| Bacillus subtilis genome sequence, 148 kb sequen...	38	8.3

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  297 bits (150), Expect = 6e-78
 Identities = 167/170 (98%), Gaps = 2/170 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    cttaggtaggtaaaacatacaccatattaaaagtggcatgcttaaaaggtgtaaaggcag 60
            |||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1320 cttaggtaggtaaaacat-cag-atattaaaagtggcatgcttaaaaggtgtaaaggcag 1263

                                                                        
Query: 61   ctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1262 ctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacct 1203

                                                              
Query: 121  tccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 tccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 1153

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  274 bits (138), Expect = 8e-71
 Identities = 155/158 (98%), Gaps = 2/158 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    cttaggtaggtaaaacatacaccatattaaaagtggcatgcttaaaaggtgtaaaggcag 60
            |||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||
Sbjct: 7680 cttaggtaggtaaaacat-cag-atattaaaagtggcatgcttaaaaggtgtaaaggcag 7623

                                                                        
Query: 61   ctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7622 ctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaacct 7563

                                                  
Query: 121  tccggcacgggcaaagtaccttgctgtgctcctttacc 158
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 7562 tccggcacgggcaaagtaccttgctgtgctcctttacc 7525

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  240 bits (121), Expect = 1e-60
 Identities = 135/137 (98%), Gaps = 2/137 (1%)
 Strand = Plus / Minus

                                                                        
Query: 24   atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgt-cgtcgctccttgccg 82
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1607 atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccg 1548

                                                                        
Query: 83   ttgggtcgtagttcttggcattttggtcggtgcaaccttccggca-cgggcaaagtacct 141
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1547 ttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcgggcaaagtacct 1488

                             
Query: 142  tgctgtgctcctttacc 158
            |||||||||||||||||
Sbjct: 1487 tgctgtgctcctttacc 1471

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  200 bits (101), Expect = 1e-48
 Identities = 131/141 (92%)
 Strand = Plus / Minus

                                                                        
Query: 30   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 89
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 90   gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 149
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                 
Query: 150  tcctttaccgtagaaggaacc 170
            |||||||||||||||||||||
Sbjct: 1369 tcctttaccgtagaaggaacc 1349

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  176 bits (89), Expect = 1e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 30   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 89
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                                                        
Query: 90   gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 149
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408

                     
Query: 150  tcctttacc 158
            |||||||||
Sbjct: 1407 tcctttacc 1399

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  168 bits (85), Expect = 3e-39
 Identities = 115/125 (92%)
 Strand = Plus / Minus

                                                                       
Query: 34  tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtag 93
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct: 664 tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaag 605

                                                                       
Query: 94  ttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcct 153
           ||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| |||
Sbjct: 604 ttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccct 545

                
Query: 154 ttacc 158
           |||||
Sbjct: 544 ttacc 540

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  168 bits (85), Expect = 3e-39
 Identities = 115/125 (92%)
 Strand = Plus / Minus

                                                                        
Query: 34   tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtag 93
            |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct: 1514 tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaag 1455

                                                                        
Query: 94   ttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcct 153
            ||||||||| | ||||||||||| ||| |||| || |||||||||||||||||||| |||
Sbjct: 1454 ttcttggcagtctggtcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccct 1395

                 
Query: 154  ttacc 158
            |||||
Sbjct: 1394 ttacc 1390

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  145 bits (73), Expect = 5e-32
 Identities = 120/135 (88%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                                                        
Query: 99   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 155
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311

                           
Query: 156  accgtagaaggaacc 170
             ||||||||||||||
Sbjct: 1310 cccgtagaaggaacc 1296

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  145 bits (73), Expect = 5e-32
 Identities = 120/135 (88%), Gaps = 3/135 (2%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                                                        
Query: 99   ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 155
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346

                           
Query: 156  accgtagaaggaacc 170
             ||||||||||||||
Sbjct: 1345 cccgtagaaggaacc 1331

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 39     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 99     ggcattttggtcggtgcaaccttccggcacgggca 133
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 57     gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 116
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 117    accttccggcacggg 131
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 39    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 99    ggcattttggtcggtgcaaccttccggcacgggca 133
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 57    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 116
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 117   accttccggcacggg 131
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 99   ggcattttggtcggtgcaaccttccggcacgggca 133
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 39       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 99       ggcattttggtcggtgcaaccttccggcacgggca 133
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 57       gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 116
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 117      accttccggcacggg 131
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 99   ggcattttggtcggtgcaaccttccggcacgggca 133
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 99   ggcattttggtcggtgcaaccttccggcacgggca 133
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 99   ggcattttggtcggtgcaaccttccggcacgggca 133
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 99   ggcattttggtcggtgcaaccttccggcacgggca 133
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 39       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 99       ggcattttggtcggtgcaaccttccggcacgggca 133
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 57       gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 116
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 117      accttccggcacggg 131
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  133 bits (67), Expect = 2e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 99   ggcattttggtcggtgcaaccttccggcacgggca 133
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 7e-25
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 45  aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 104
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 105 ttggtcggtgcaaccttccggcacgggca 133
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  117 bits (59), Expect = 1e-23
 Identities = 87/95 (91%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 39   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 99   ggcattttggtcggtgcaaccttccggcacgggca 133
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 7e-19
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 39  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 99  ggcattttggtcggtgcaaccttccggcacgggca 133
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 39      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 99      ggcattttggtcggtgcaaccttccggcacgggca 133
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319



 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 58       cagctgccgtcgtcgctcc 76
                |||||||||||||||||||
Sbjct: 13186146 cagctgccgtcgtcgctcc 13186128

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 39    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 98
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 99    ggcattttggtcggtgcaaccttccggcacgggca 133
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 49   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 108
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 109  tcggtgcaaccttc 122
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 49   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 108
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 109  tcggtgcaaccttc 122
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 49   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 108
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 109  tcggtgcaaccttc 122
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 9e-09
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 49   gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 108
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 109  tcggtgcaaccttc 122
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|AC138265.9| Mus musculus chromosome 5, clone RP23-41J13, complete sequence
          Length = 172279

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      taggtaggtaaaacatacac 22
              ||||||||||||||||||||
Sbjct: 108915 taggtaggtaaaacatacac 108896

---

>gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosome 5, complete sequence
          Length = 174372

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     taggtaggtaaaacatacac 22
             ||||||||||||||||||||
Sbjct: 78678 taggtaggtaaaacatacac 78697

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 48   ggtgtaaaggcagctgccgtcgtcgctc 75
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence
          Length = 175840

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     atacaccatattaaaagtgg 36
              ||||||||||||||||||||
Sbjct: 105099 atacaccatattaaaagtgg 105118

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tggcatgcttaaaaggtgta 53
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC112956.12| Mus musculus chromosome 9, clone RP23-412P4, complete sequence
          Length = 197841

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 25     tattaaaagtggcatgcttaaaa 47
              |||||||||||||| ||||||||
Sbjct: 167602 tattaaaagtggcaggcttaaaa 167580

---

>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3,
             complete sequence
          Length = 156998

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    aaagtggcatgcttaaaag 48
             |||||||||||||||||||
Sbjct: 15943 aaagtggcatgcttaaaag 15925

---

>emb|CR759843.7| Zebrafish DNA sequence from clone DKEYP-82B4 in linkage group 22,
             complete sequence
          Length = 190165

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    aacatacaccatattaaaa 32
             |||||||||||||||||||
Sbjct: 49205 aacatacaccatattaaaa 49223

---

>emb|Z99106.2|BSUB0003 Bacillus subtilis complete genome (section 3 of 21): from 415769 to
              611680
          Length = 195912

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      ttaggtaggtaaaacatac 20
              |||||||||||||||||||
Sbjct: 166377 ttaggtaggtaaaacatac 166395

---

>emb|CR749167.8| Zebrafish DNA sequence from clone DKEY-23A17 in linkage group 5,
             complete sequence
          Length = 155288

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    aacatacaccatattaaaa 32
             |||||||||||||||||||
Sbjct: 59572 aacatacaccatattaaaa 59590

---

>gb|AC160139.2| Mus musculus BAC clone RP23-93P8 from chromosome 9, complete sequence
          Length = 208009

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 25     tattaaaagtggcatgcttaaaa 47
              |||||||||||||| ||||||||
Sbjct: 193364 tattaaaagtggcaggcttaaaa 193386

---

>dbj|AK166687.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
           library, clone:I1C0002J24 product:DNA primase, p58
           subunit, full insert sequence
          Length = 2133

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 ttgctgtgctcctttaccg 159
           |||||||||||||||||||
Sbjct: 849 ttgctgtgctcctttaccg 831

---

>gb|AC084292.23|AC084292 Mus musculus 1 BAC RP23-254E8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 192003

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    atacaccatattaaaagtg 35
             |||||||||||||||||||
Sbjct: 81296 atacaccatattaaaagtg 81314

---

>emb|BX548173.6| Zebrafish DNA sequence from clone DKEY-47K16 in linkage group 21,
              complete sequence
          Length = 210873

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     aacatacaccatattaaaa 32
              |||||||||||||||||||
Sbjct: 127712 aacatacaccatattaaaa 127694

---

>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0055N01
          Length = 154783

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 58   cagctgccgtcgtcgctcc 76
            |||||||||||||||||||
Sbjct: 7580 cagctgccgtcgtcgctcc 7562

---

>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0048A13
          Length = 137680

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 58     cagctgccgtcgtcgctcc 76
              |||||||||||||||||||
Sbjct: 108236 cagctgccgtcgtcgctcc 108218

---

>gb|AC130712.4| Mus musculus BAC clone RP23-125B4 from 1, complete sequence
          Length = 186518

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   ttgctgtgctcctttaccg 159
             |||||||||||||||||||
Sbjct: 34991 ttgctgtgctcctttaccg 34973

---

>emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chromosome X, complete
              sequence
          Length = 213401

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     taaaacatacaccatatta 29
              |||||||||||||||||||
Sbjct: 195550 taaaacatacaccatatta 195532

---

>dbj|AB001488.1| Bacillus subtilis genome sequence, 148 kb sequence of the region between
              35 and 47 degree
          Length = 148068

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      ttaggtaggtaaaacatac 20
              |||||||||||||||||||
Sbjct: 115819 ttaggtaggtaaaacatac 115837


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,113,044
Number of Sequences: 3902068
Number of extensions: 1113044
Number of successful extensions: 75852
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75635
Number of HSP's gapped (non-prelim): 194
length of query: 170
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 148
effective length of database: 17,147,199,772
effective search space: 2537785566256
effective search space used: 2537785566256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)

---