ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20o21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEPH_RAT (Q920H8) Hephaestin precursor (EC 1.-.-.-) 29 9.6

>HEPH_RAT (Q920H8) Hephaestin precursor (EC 1.-.-.-)|
          Length = 1157

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 175 YCTPWLLPTKNFTNLSTCFVSIYLQISYQSIFKMDGC 65
           + T  ++P K+ T L +C V+ +L+   Q+ +K+D C
Sbjct: 330 FVTAEMVPQKSGTWLISCVVNSHLKSGMQAFYKVDSC 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,713,190
Number of Sequences: 219361
Number of extensions: 1987837
Number of successful extensions: 5377
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5372
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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