ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20o16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RIOK3_MOUSE (Q9DBU3) Serine/threonine-protein kinase RIO3 (EC 2.... 30 4.9
2BTUC_SALTI (Q8Z6I5) Vitamin B12 import system permease protein btuC 30 8.4
3NUDH_WOLPM (P61787) Probable (di)nucleoside polyphosphate hydrol... 30 8.4

>RIOK3_MOUSE (Q9DBU3) Serine/threonine-protein kinase RIO3 (EC 2.7.11.1) (RIO|
           kinase 3)
          Length = 519

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 420 SNNILKGADFSSCHLEQQVRVTTTKRLSTELLH*SVHGRY*LLWQPGSLWLLGVS 256
           SN  +K A + + HL QQ+    T      L+H  +   Y +LW  G +WL+ VS
Sbjct: 378 SNEEMKDAYYQTLHLMQQLYNECT------LVHADL-SEYNMLWHAGKVWLIDVS 425



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>BTUC_SALTI (Q8Z6I5) Vitamin B12 import system permease protein btuC|
          Length = 326

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = +2

Query: 344 LFVVVTLTCCSK*QELKSAPFNMLLLPSKRRNYSGKKFRLRRKNLIVTRGWLGCMLIALV 523
           L  V+   CC      +S P NML L        G    L R  L++  GW+  + +A+ 
Sbjct: 197 LIPVLIWICC------QSQPLNMLALGETSARQLGLPLWLWRNLLVIATGWMVGVSVAMA 250

Query: 524 KADSVLLFMGSVAP 565
            A   + F+G V P
Sbjct: 251 GA---IGFIGLVIP 261



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>NUDH_WOLPM (P61787) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 162

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 389 VPVTWNNRSGSQRQRGYLQNYCTDPYMVVTNSCG 288
           +P+ WN +   Q+QR +L  +C +   +  N  G
Sbjct: 84  IPICWNGKYSGQKQRWFLMKFCGEDEDIDINYTG 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,011,068
Number of Sequences: 219361
Number of extensions: 2091298
Number of successful extensions: 5181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5179
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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