ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192949.1| Oryza sativa (japonica cultivar-group), predic... 327 2e-86
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 327 2e-86
3dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic D... 327 2e-86
4dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic D... 327 2e-86
5dbj|AK062051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 327 2e-86
6gb|AY110540.1| Zea mays CL3870_1 mRNA sequence 278 2e-71
7gb|DQ363991.1| Saccharum hybrid cultivar chloroplast 50S ribosom... 208 1e-50
8ref|XM_780717.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.44
9ref|XM_952984.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.8
10ref|XM_327153.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.8
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
12gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
13emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298... 42 1.8
14gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone mth2-4... 40 6.9
15gb|AY741093.1| Integration vector pJK202, complete sequence 40 6.9
16gb|AY685399.1| Annona cherimola clone LMCH12 microsatellite sequ... 40 6.9
17gb|AY552325.1| Didelphis virginiana insulin-like growth factor 2... 40 6.9
18gb|AC154726.2| Mus musculus BAC clone RP24-373I6 from chromosome... 40 6.9
19gb|AC135312.18| Medicago truncatula clone mth2-34c3, complete se... 40 6.9
20emb|AJ744860.1| uncultured bacterium pTB11 plasmid complete genome 40 6.9
21ref|XM_748454.1| Aspergillus fumigatus Af293 nucleoside diphosph... 40 6.9
22emb|CR925759.7| Wallaby DNA sequence from clone MEKBa-346C2, com... 40 6.9
23gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete seq... 40 6.9
24gb|AC144893.15| Medicago truncatula clone mth2-29d23, complete s... 40 6.9
25gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete se... 40 6.9
26gb|AC149496.23| Medicago truncatula clone mth2-119c5, complete s... 40 6.9
27gb|AC151740.21| Medicago truncatula clone mth2-82n16, complete s... 40 6.9
28gb|AC136138.30| Medicago truncatula clone mth2-8f9, complete seq... 40 6.9
29gb|AC133779.21| Medicago truncatula clone mth2-27n4, complete se... 40 6.9
30gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete se... 40 6.9
31gb|AC140913.25| Medicago truncatula clone mth2-26h9, complete se... 40 6.9
32emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6... 40 6.9
33gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete seq... 40 6.9
34gb|AC151727.27| Medicago truncatula clone mth2-25p23, complete s... 40 6.9
35gb|AC147010.31| Medicago truncatula clone mth2-145p5, complete s... 40 6.9
36gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete s... 40 6.9
37gb|AC138527.22| Medicago truncatula clone mth2-10a20, complete s... 40 6.9
38gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete seq... 40 6.9
39gb|AC149128.3| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 6.9
40gb|AF330047.1|AF330047 Mus musculus chromosome 13 clone CITB-332... 40 6.9
41dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.9
42gb|AC153814.4| Mus musculus chromosome 17, clone RP23-323F20, co... 40 6.9
43emb|CT573054.2| Medicago truncatula chromosome 5 clone mte1-76j1... 40 6.9
44emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a... 40 6.9
45emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9... 40 6.9
46emb|CT010518.7| M.truncatula DNA sequence from clone MTH2-78A9 o... 40 6.9
47emb|CT030254.7| Mouse DNA sequence from clone RP24-343E1 on chro... 40 6.9
48emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l2... 40 6.9
49emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9... 40 6.9
50gb|AC092266.4| Homo sapiens chromosome 5 clone RP11-24P24, compl... 40 6.9
51gb|M93696.1|RP4TRBAO Plasmid RP4 (trbA-trbO) genes, complete cds 40 6.9
52gb|L27758.1|BIACOMGEN Birmingham IncP-alpha plasmid (R18, R68, R... 40 6.9 
>ref|NM_192949.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 408

 Score =  327 bits (165), Expect = 2e-86
 Identities = 244/274 (89%)
 Strand = Plus / Minus

                                                                       
Query: 238 aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 297
           |||||||||||||||||||||||||||||   |||||| |||| || |||||||||||||
Sbjct: 371 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 312

                                                                       
Query: 298 acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 357
           | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 311 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 252

                                                                       
Query: 358 gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 417
           | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| 
Sbjct: 251 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 192

                                                                       
Query: 418 gtgccccccgtcaccagcaccagctnaccgttgcagtacaccttngcgtnctcnaagatc 477
           || ||||||||||||||||||||||  ||||||||||||||||| |||| |||  |||||
Sbjct: 191 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 132

                                             
Query: 478 tccgnntgcanncccttcttccgnatnnagcacc 511
           ||||  ||||  ||||||||||| ||  ||||||
Sbjct: 131 tccgggtgcagccccttcttccgcatcgagcacc 98
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  327 bits (165), Expect = 2e-86
 Identities = 244/274 (89%)
 Strand = Plus / Plus

                                                                            
Query: 238      aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 297
                |||||||||||||||||||||||||||||   |||||| |||| || |||||||||||||
Sbjct: 25347085 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 25347144

                                                                            
Query: 298      acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 357
                | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 25347145 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 25347204

                                                                            
Query: 358      gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 417
                | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| 
Sbjct: 25347205 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 25347264

                                                                            
Query: 418      gtgccccccgtcaccagcaccagctnaccgttgcagtacaccttngcgtnctcnaagatc 477
                || ||||||||||||||||||||||  ||||||||||||||||| |||| |||  |||||
Sbjct: 25347265 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 25347324

                                                  
Query: 478      tccgnntgcanncccttcttccgnatnnagcacc 511
                ||||  ||||  ||||||||||| ||  ||||||
Sbjct: 25347325 tccgggtgcagccccttcttccgcatcgagcacc 25347358
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>dbj|AP003681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1158C05
          Length = 145514

 Score =  327 bits (165), Expect = 2e-86
 Identities = 244/274 (89%)
 Strand = Plus / Plus

                                                                          
Query: 238    aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 297
              |||||||||||||||||||||||||||||   |||||| |||| || |||||||||||||
Sbjct: 144129 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 144188

                                                                          
Query: 298    acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 357
              | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 144189 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 144248

                                                                          
Query: 358    gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 417
              | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| 
Sbjct: 144249 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 144308

                                                                          
Query: 418    gtgccccccgtcaccagcaccagctnaccgttgcagtacaccttngcgtnctcnaagatc 477
              || ||||||||||||||||||||||  ||||||||||||||||| |||| |||  |||||
Sbjct: 144309 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 144368

                                                
Query: 478    tccgnntgcanncccttcttccgnatnnagcacc 511
              ||||  ||||  ||||||||||| ||  ||||||
Sbjct: 144369 tccgggtgcagccccttcttccgcatcgagcacc 144402
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>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0663E10
          Length = 162297

 Score =  327 bits (165), Expect = 2e-86
 Identities = 244/274 (89%)
 Strand = Plus / Plus

                                                                         
Query: 238   aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 297
             |||||||||||||||||||||||||||||   |||||| |||| || |||||||||||||
Sbjct: 37085 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 37144

                                                                         
Query: 298   acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 357
             | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 37145 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 37204

                                                                         
Query: 358   gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 417
             | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| 
Sbjct: 37205 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 37264

                                                                         
Query: 418   gtgccccccgtcaccagcaccagctnaccgttgcagtacaccttngcgtnctcnaagatc 477
             || ||||||||||||||||||||||  ||||||||||||||||| |||| |||  |||||
Sbjct: 37265 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 37324

                                               
Query: 478   tccgnntgcanncccttcttccgnatnnagcacc 511
             ||||  ||||  ||||||||||| ||  ||||||
Sbjct: 37325 tccgggtgcagccccttcttccgcatcgagcacc 37358
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>dbj|AK062051.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-B04, full
           insert sequence
          Length = 748

 Score =  327 bits (165), Expect = 2e-86
 Identities = 244/274 (89%)
 Strand = Plus / Minus

                                                                       
Query: 238 aactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtactccttg 297
           |||||||||||||||||||||||||||||   |||||| |||| || |||||||||||||
Sbjct: 455 aactccgggtcgccgtcggggtgcatctccctccactggtcctcgggccagtactccttg 396

                                                                       
Query: 298 acgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagcgccgag 357
           | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| 
Sbjct: 395 atgtggccccacttcttgcggaacttctcgatctggctgtccatgacgaccatcgccgac 336

                                                                       
Query: 358 gagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactccggcttc 417
           | ||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| 
Sbjct: 335 gtgtcgccgacgtagtaggggtggttccccgaccacacgtccaccgtgtactccggcttg 276

                                                                       
Query: 418 gtgccccccgtcaccagcaccagctnaccgttgcagtacaccttngcgtnctcnaagatc 477
           || ||||||||||||||||||||||  ||||||||||||||||| |||| |||  |||||
Sbjct: 275 gttccccccgtcaccagcaccagctccccgttgcagtacaccttcgcgtcctcgtagatc 216

                                             
Query: 478 tccgnntgcanncccttcttccgnatnnagcacc 511
           ||||  ||||  ||||||||||| ||  ||||||
Sbjct: 215 tccgggtgcagccccttcttccgcatcgagcacc 182
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>gb|AY110540.1| Zea mays CL3870_1 mRNA sequence
          Length = 834

 Score =  278 bits (140), Expect = 2e-71
 Identities = 231/266 (86%)
 Strand = Plus / Minus

                                                                       
Query: 232 ggctcaaactccgggtcgccgtcggggtgcatctcaagccactgctccttggtccagtac 291
           ||||| ||||||||||||||||| |||||||||||   |||||| |||| || |||||||
Sbjct: 398 ggctcgaactccgggtcgccgtctgggtgcatctccctccactggtcctcgggccagtac 339

                                                                       
Query: 292 tccttgacgtgcccccacttcttgcggaacttctcgatctggctgtccatgacgaccagc 351
           ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 338 tccttgatgtggccccacttcttgcggaacttctcgatctggctgtccatgaccacgagc 279

                                                                       
Query: 352 gccgaggagtcgccgacgtagtaggggtggttccctgaccaaacatccaccgagtactcc 411
           ||||||| |||||||||||||||||||||||| || ||||| || ||||||| |||||||
Sbjct: 278 gccgaggtgtcgccgacgtagtaggggtggtttccggaccacacgtccaccgtgtactcc 219

                                                                       
Query: 412 ggcttcgtgccccccgtcaccagcaccagctnaccgttgcagtacaccttngcgtnctcn 471
           ||||| |||      ||||||||||||||||  ||||||||||||||||| |||| ||| 
Sbjct: 218 ggcttggtgnnnnnngtcaccagcaccagctcgccgttgcagtacaccttcgcgtcctcg 159

                                     
Query: 472 aagatctccgnntgcanncccttctt 497
            |||||||||  ||||  ||||||||
Sbjct: 158 tagatctccgggtgcaaccccttctt 133
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>gb|DQ363991.1| Saccharum hybrid cultivar chloroplast 50S ribosomal protein L31
           mRNA, partial cds; nuclear gene for chloroplast product
          Length = 321

 Score =  208 bits (105), Expect = 1e-50
 Identities = 159/177 (89%)
 Strand = Plus / Minus

                                                                       
Query: 227 cctctggctcaaactccgggtcgccgtcggggtgcatctcaagccactgctccttggtcc 286
           |||| ||||| ||||||||||||||||| |||||||||||   |||||| |||| || ||
Sbjct: 179 cctcgggctcgaactccgggtcgccgtccgggtgcatctccctccactggtcctcgggcc 120

                                                                       
Query: 287 agtactccttgacgtgcccccacttcttgcggaacttctcgatctggctgtccatgacga 346
           |||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct: 119 agtattccttgatgtggccccacttcttgcggaacttctcgatctggctgtccatcacca 60

                                                                    
Query: 347 ccagcgccgaggagtcgccgacgtagtaggggtggttccctgaccaaacatccaccg 403
           |||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||
Sbjct: 59  ccagcgccgaggtgtcgccgacgtagtaggggtggttcccggaccacacgtccaccg 3
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>ref|XM_780717.1| PREDICTED: Strongylocentrotus purpuratus similar to CG17927-PA,
            isoform A (LOC580674), mRNA
          Length = 6028

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 312  cttgcggaacttctcgatctgg 333
            ||||||||||||||||||||||
Sbjct: 5461 cttgcggaacttctcgatctgg 5440
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>ref|XM_952984.1| Neurospora crassa OR74A hypothetical protein (NCU06868.1) partial
            mRNA
          Length = 3159

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 277  tccttggtccagtactccttg 297
            |||||||||||||||||||||
Sbjct: 1220 tccttggtccagtactccttg 1200
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>ref|XM_327153.1| Neurospora crassa OR74A hypothetical protein (NCU06868.1) partial
            mRNA
          Length = 3159

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 277  tccttggtccagtactccttg 297
            |||||||||||||||||||||
Sbjct: 1220 tccttggtccagtactccttg 1200
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 269      gccactgctccttggtccagtactccttg 297
                |||||| |||||||||||||| |||||||
Sbjct: 22280481 gccactcctccttggtccagtcctccttg 22280509
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 269      gccactgctccttggtccagtactccttg 297
                |||||| |||||||||||||| |||||||
Sbjct: 22208826 gccactcctccttggtccagtcctccttg 22208854
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>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109610

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 269   gccactgctccttggtccagtactccttg 297
             |||||| |||||||||||||| |||||||
Sbjct: 81273 gccactcctccttggtccagtcctccttg 81245
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>gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone mth2-4g23, complete sequence
          Length = 103199

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 97579 gtctcgtcgtcctctggctc 97598



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 91056 gtctcgtcgtcctctggctc 91075
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>gb|AY741093.1| Integration vector pJK202, complete sequence
          Length = 53204

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 301  tgcccccacttcttgcggaacttctcga 328
            |||| |||||||||||||||||| ||||
Sbjct: 8542 tgccgccacttcttgcggaacttgtcga 8515
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>gb|AY685399.1| Annona cherimola clone LMCH12 microsatellite sequence
          Length = 490

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                     
Query: 445 ccgttgcagtacaccttngcgtnctc 470
           ||||||||||||||||| |||| |||
Sbjct: 378 ccgttgcagtacaccttggcgttctc 353
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>gb|AY552325.1| Didelphis virginiana insulin-like growth factor 2 (IGF2) gene,
            complete cds
          Length = 9584

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 99   acggtacatctggggaatcaagcc 122
            ||||||||||||||||| ||||||
Sbjct: 1952 acggtacatctggggaagcaagcc 1975
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>gb|AC154726.2| Mus musculus BAC clone RP24-373I6 from chromosome 13, complete sequence
          Length = 173853

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   acatctggggaatcaagcca 123
             ||||||||||||||||||||
Sbjct: 14272 acatctggggaatcaagcca 14291
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>gb|AC135312.18| Medicago truncatula clone mth2-34c3, complete sequence
          Length = 125619

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 16783 gtctcgtcgtcctctggctc 16802
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>emb|AJ744860.1| uncultured bacterium pTB11 plasmid complete genome
          Length = 68869

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 301   tgcccccacttcttgcggaacttctcga 328
             |||| |||||||||||||||||| ||||
Sbjct: 17795 tgccgccacttcttgcggaacttgtcga 17768
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>ref|XM_748454.1| Aspergillus fumigatus Af293 nucleoside diphosphatase Ynd1
           (Afu5g11010) partial mRNA
          Length = 2160

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 311 tcttgcggaacttctcgatc 330
           ||||||||||||||||||||
Sbjct: 237 tcttgcggaacttctcgatc 256
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>emb|CR925759.7| Wallaby DNA sequence from clone MEKBa-346C2, complete sequence
          Length = 146757

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    acggtacatctggggaatcaagcc 122
             ||||||||||||||||| ||||||
Sbjct: 63215 acggtacatctggggaagcaagcc 63192
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>gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete sequence
          Length = 119095

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 70011 gtctcgtcgtcctctggctc 69992
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>gb|AC144893.15| Medicago truncatula clone mth2-29d23, complete sequence
          Length = 114354

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 98184 gtctcgtcgtcctctggctc 98203
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>gb|AC148154.15| Medicago truncatula clone mth2-17a6, complete sequence
          Length = 138465

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 78358 gtctcgtcgtcctctggctc 78377
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>gb|AC149496.23| Medicago truncatula clone mth2-119c5, complete sequence
          Length = 115576

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  gtctcgtcgtcctctggctc 236
            ||||||||||||||||||||
Sbjct: 6407 gtctcgtcgtcctctggctc 6388
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>gb|AC151740.21| Medicago truncatula clone mth2-82n16, complete sequence
          Length = 131700

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 40254 gtctcgtcgtcctctggctc 40273



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 16213 gtctcgtcgtcctctggctc 16194
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>gb|AC136138.30| Medicago truncatula clone mth2-8f9, complete sequence
          Length = 128267

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    gtctcgtcgtcctctggctc 236
              ||||||||||||||||||||
Sbjct: 124398 gtctcgtcgtcctctggctc 124379



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    gtctcgtcgtcctctggctc 236
              ||||||||||||||||||||
Sbjct: 116836 gtctcgtcgtcctctggctc 116817
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>gb|AC133779.21| Medicago truncatula clone mth2-27n4, complete sequence
          Length = 100702

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 61414 gtctcgtcgtcctctggctc 61395
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>gb|AC140025.7| Medicago truncatula clone mth2-11i16, complete sequence
          Length = 130592

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    gtctcgtcgtcctctggctc 236
              ||||||||||||||||||||
Sbjct: 130182 gtctcgtcgtcctctggctc 130201
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>gb|AC140913.25| Medicago truncatula clone mth2-26h9, complete sequence
          Length = 124828

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 90525 gtctcgtcgtcctctggctc 90506
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>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE
          Length = 127675

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    gtctcgtcgtcctctggctc 236
              ||||||||||||||||||||
Sbjct: 102717 gtctcgtcgtcctctggctc 102698
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>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence
          Length = 129518

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 47210 gtctcgtcgtcctctggctc 47229
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>gb|AC151727.27| Medicago truncatula clone mth2-25p23, complete sequence
          Length = 123526

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  gtctcgtcgtcctctggctc 236
            ||||||||||||||||||||
Sbjct: 5058 gtctcgtcgtcctctggctc 5077
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>gb|AC147010.31| Medicago truncatula clone mth2-145p5, complete sequence
          Length = 132320

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    gtctcgtcgtcctctggctc 236
              ||||||||||||||||||||
Sbjct: 122592 gtctcgtcgtcctctggctc 122611



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    gtctcgtcgtcctctggctc 236
              ||||||||||||||||||||
Sbjct: 116404 gtctcgtcgtcctctggctc 116423
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>gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete sequence
          Length = 119041

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 34082 gtctcgtcgtcctctggctc 34063
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>gb|AC138527.22| Medicago truncatula clone mth2-10a20, complete sequence
          Length = 115023

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 39464 gtctcgtcgtcctctggctc 39445
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>gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete sequence
          Length = 127642

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 65666 gtctcgtcgtcctctggctc 65647
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>gb|AC149128.3| Medicago truncatula chromosome 7 BAC clone mth2-139i2, complete
             sequence
          Length = 93434

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 82578 gtctcgtcgtcctctggctc 82559
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>gb|AF330047.1|AF330047 Mus musculus chromosome 13 clone CITB-332O23, partial sequence
          Length = 23088

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  ccacttcttgcggaacttct 325
            ||||||||||||||||||||
Sbjct: 5907 ccacttcttgcggaacttct 5926
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 325     tcgatctggctgtccatgac 344
               ||||||||||||||||||||
Sbjct: 8060512 tcgatctggctgtccatgac 8060493
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>gb|AC153814.4| Mus musculus chromosome 17, clone RP23-323F20, complete sequence
          Length = 222749

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    acatctggggaatcaagcca 123
              ||||||||||||||||||||
Sbjct: 194009 acatctggggaatcaagcca 194028
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>emb|CT573054.2| Medicago truncatula chromosome 5 clone mte1-76j13, COMPLETE SEQUENCE
          Length = 114731

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 43772 gtctcgtcgtcctctggctc 43753
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>emb|CT033763.2| Medicago truncatula chromosome 5 clone mth2-139a2, COMPLETE SEQUENCE
          Length = 132108

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    gtctcgtcgtcctctggctc 236
              ||||||||||||||||||||
Sbjct: 131687 gtctcgtcgtcctctggctc 131706
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>emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9 on chromosome 3,
             complete sequence
          Length = 113846

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 84574 gtctcgtcgtcctctggctc 84555
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>emb|CT010518.7| M.truncatula DNA sequence from clone MTH2-78A9 on chromosome 3,
             complete sequence
          Length = 135014

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 46073 gtctcgtcgtcctctggctc 46054
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>emb|CT030254.7| Mouse DNA sequence from clone RP24-343E1 on chromosome 13, complete
             sequence
          Length = 147004

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   acatctggggaatcaagcca 123
             ||||||||||||||||||||
Sbjct: 67754 acatctggggaatcaagcca 67773
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>emb|CR962122.2| Medicago truncatula chromosome 5 clone mte1-46l20, COMPLETE SEQUENCE
          Length = 150486

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    gtctcgtcgtcctctggctc 236
              ||||||||||||||||||||
Sbjct: 135443 gtctcgtcgtcctctggctc 135424
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>emb|CT009565.10| M.truncatula DNA sequence from clone MTH2-173F9 on chromosome 3,
             complete sequence
          Length = 151325

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   gtctcgtcgtcctctggctc 236
             ||||||||||||||||||||
Sbjct: 97639 gtctcgtcgtcctctggctc 97658
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>gb|AC092266.4| Homo sapiens chromosome 5 clone RP11-24P24, complete sequence
          Length = 171601

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    caaactagcataattgagtt 145
              ||||||||||||||||||||
Sbjct: 107790 caaactagcataattgagtt 107771
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>gb|M93696.1|RP4TRBAO Plasmid RP4 (trbA-trbO) genes, complete cds
          Length = 13205

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 301  tgcccccacttcttgcggaacttctcga 328
            |||| |||||||||||||||||| ||||
Sbjct: 3576 tgccgccacttcttgcggaacttgtcga 3549
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>gb|L27758.1|BIACOMGEN Birmingham IncP-alpha plasmid (R18, R68, RK2, RP1, RP4) complete genome
          Length = 60099

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 301   tgcccccacttcttgcggaacttctcga 328
             |||| |||||||||||||||||| ||||
Sbjct: 21533 tgccgccacttcttgcggaacttgtcga 21506


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,811,424
Number of Sequences: 3902068
Number of extensions: 2811424
Number of successful extensions: 48047
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47892
Number of HSP's gapped (non-prelim): 154
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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