ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20o02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109859.1| Zea mays CL21031_1 mRNA sequence Length = 848 Score = 198 bits (100), Expect = 1e-47 Identities = 220/260 (84%) Strand = Plus / Minus Query: 286 gcctttgcttgagattctttgtccatgtccaagaagagttgatgccatctagagtctgat 345 ||||||||| | |||||||| |||||||||||||||| |||||||||| ||||||||| Sbjct: 480 gcctttgctggggattctttatccatgtccaagaagaaacgatgccatctggagtctgat 421 Query: 346 gttagctctgggtgaaatgcggtggcaaggatgttcccttgtcgtactgcaacaatcacc 405 || | |||||||| || || || || |||||||||||||| || ||||||||||| ||| Sbjct: 420 gtcaattctgggtggaaagcagttgcgaggatgttcccttgccgcactgcaacaattacc 361 Query: 406 cgatctttggagtacacttggtcctccacaccctcgccagatgttattgtaatgctgggt 465 |||||||| || ||| ||| ||||| |||||| ||| ||| |||||||||||||||| Sbjct: 360 cgatcttttgaatactcttcttcctcagtaccctccccaaatgatattgtaatgctgggt 301 Query: 466 ctgccagcaggaacagggcaatcggccaatacttcaacatcctggcctacttctaggata 525 ||| || |||||||||||||||| ||||||| ||||||||| | |||||||| | ||| Sbjct: 300 ctgtcaacaggaacagggcaatccgccaatatttcaacatctggacctacttccaatata 241 Query: 526 gcaggtgctcgtataaatac 545 |||||||| ||||||||||| Sbjct: 240 gcaggtgcccgtataaatac 221
>ref|XM_463995.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1046 Score = 196 bits (99), Expect = 6e-47 Identities = 242/292 (82%) Strand = Plus / Minus Query: 297 agattctttgtccatgtccaagaagagttgatgccatctagagtctgatgttagctctgg 356 ||||||||| |||||||||| ||||| |||||||||||||||||||||| | ||||| Sbjct: 705 agattctttatccatgtccaggaagaaccgatgccatctagagtctgatgtcaattctgg 646 Query: 357 gtgaaatgcggtggcaaggatgttcccttgtcgtactgcaacaatcacccgatctttgga 416 |||||| || || || |||||||||||||| | ||| |||||||| ||||||||||| || Sbjct: 645 gtgaaaagcagtagcgaggatgttcccttgccttacagcaacaattacccgatctttcga 586 Query: 417 gtacacttggtcctccacaccctcgccagatgttattgtaatgctgggtctgccagcagg 476 |||||||| ||||| |||||||| ||||| | ||||||||| |||||||| | | || Sbjct: 585 gtacacttcttcctcaacaccctctccagacgctattgtaatactgggtctatccgatgg 526 Query: 477 aacagggcaatcggccaatacttcaacatcctggcctacttctaggatagcaggtgctcg 536 |||||| ||||| |||| ||||||||||| ||||| || | ||||||||||||||| Sbjct: 525 aacaggacaatccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcg 466 Query: 537 tataaatacnccacgacatgtattactncctncttncttntntgnaagcatt 588 ||||||||| ||||| ||||||| || ||| ||| ||| | || ||||||| Sbjct: 465 tataaatacgccacggcatgtatcgctccctccttccttctctgcaagcatt 414 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 198 ctactcgaaaatgggtagatcaggagccttattcttcgaccca 240 ||||||||| |||||||||||| ||| ||||||||| |||||| Sbjct: 804 ctactcgaagatgggtagatcaagaggcttattctttgaccca 762
>dbj|AK121866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103H03, full insert sequence Length = 1047 Score = 196 bits (99), Expect = 6e-47 Identities = 242/292 (82%) Strand = Plus / Minus Query: 297 agattctttgtccatgtccaagaagagttgatgccatctagagtctgatgttagctctgg 356 ||||||||| |||||||||| ||||| |||||||||||||||||||||| | ||||| Sbjct: 705 agattctttatccatgtccaggaagaaccgatgccatctagagtctgatgtcaattctgg 646 Query: 357 gtgaaatgcggtggcaaggatgttcccttgtcgtactgcaacaatcacccgatctttgga 416 |||||| || || || |||||||||||||| | ||| |||||||| ||||||||||| || Sbjct: 645 gtgaaaagcagtagcgaggatgttcccttgccttacagcaacaattacccgatctttcga 586 Query: 417 gtacacttggtcctccacaccctcgccagatgttattgtaatgctgggtctgccagcagg 476 |||||||| ||||| |||||||| ||||| | ||||||||| |||||||| | | || Sbjct: 585 gtacacttcttcctcaacaccctctccagacgctattgtaatactgggtctatccgatgg 526 Query: 477 aacagggcaatcggccaatacttcaacatcctggcctacttctaggatagcaggtgctcg 536 |||||| ||||| |||| ||||||||||| ||||| || | ||||||||||||||| Sbjct: 525 aacaggacaatccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcg 466 Query: 537 tataaatacnccacgacatgtattactncctncttncttntntgnaagcatt 588 ||||||||| ||||| ||||||| || ||| ||| ||| | || ||||||| Sbjct: 465 tataaatacgccacggcatgtatcgctccctccttccttctctgcaagcatt 414 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 198 ctactcgaaaatgggtagatcaggagccttattcttcgaccca 240 ||||||||| |||||||||||| ||| ||||||||| |||||| Sbjct: 804 ctactcgaagatgggtagatcaagaggcttattctttgaccca 762
>gb|BT017588.1| Zea mays clone EL01N0430D12.c mRNA sequence Length = 794 Score = 192 bits (97), Expect = 9e-46 Identities = 214/253 (84%) Strand = Plus / Minus Query: 286 gcctttgcttgagattctttgtccatgtccaagaagagttgatgccatctagagtctgat 345 ||||||||| | |||||||| |||||||||||||||| |||||||||| ||||||||| Sbjct: 426 gcctttgctggggattctttatccatgtccaagaagaaacgatgccatctggagtctgat 367 Query: 346 gttagctctgggtgaaatgcggtggcaaggatgttcccttgtcgtactgcaacaatcacc 405 || | |||||||| || || || || |||||||||||||| || ||||||||||| ||| Sbjct: 366 gtcaattctgggtggaaagcagttgcgaggatgttcccttgccgcactgcaacaattacc 307 Query: 406 cgatctttggagtacacttggtcctccacaccctcgccagatgttattgtaatgctgggt 465 |||||||| || ||| ||| ||||| |||||| ||| ||| |||||||||||||||| Sbjct: 306 cgatcttttgaatactcttcttcctcagtaccctccccaaatgatattgtaatgctgggt 247 Query: 466 ctgccagcaggaacagggcaatcggccaatacttcaacatcctggcctacttctaggata 525 ||| |||||||||| |||||||| ||||||| ||||||||| | |||||||| || ||| Sbjct: 246 ctgtcagcaggaacggggcaatccgccaatatttcaacatctggacctacttccagtata 187 Query: 526 gcaggtgctcgta 538 |||||||| |||| Sbjct: 186 gcaggtgcccgta 174
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 330 ccatctagagtctgatgttagctctgggtgaaatgcggtggcaaggatgttcccttgtcg 389 |||||||||||||||||| | ||||||||||| || || || |||||||||||||| | Sbjct: 1566618 ccatctagagtctgatgtcaattctgggtgaaaagcagtagcgaggatgttcccttgcct 1566677 Query: 390 tactgcaacaatcacccgatctttggagtacactt 424 ||| |||||||| ||||||||||| |||||||||| Sbjct: 1566678 tacagcaacaattacccgatctttcgagtacactt 1566712 Score = 87.7 bits (44), Expect = 4e-14 Identities = 130/161 (80%) Strand = Plus / Plus Query: 428 cctccacaccctcgccagatgttattgtaatgctgggtctgccagcaggaacagggcaat 487 |||| |||||||| ||||| | ||||||||| |||||||| | | |||||||| |||| Sbjct: 1567494 cctcaacaccctctccagacgctattgtaatactgggtctatccgatggaacaggacaat 1567553 Query: 488 cggccaatacttcaacatcctggcctacttctaggatagcaggtgctcgtataaatacnc 547 | |||| ||||||||||| ||||| || | |||||||||||||||||||||||| | Sbjct: 1567554 ccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcgtataaatacgc 1567613 Query: 548 cacgacatgtattactncctncttncttntntgnaagcatt 588 |||| ||||||| || ||| ||| ||| | || ||||||| Sbjct: 1567614 cacggcatgtatcgctccctccttccttctctgcaagcatt 1567654 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 198 ctactcgaaaatgggtagatcaggagccttattcttcgaccca 240 ||||||||| |||||||||||| ||| ||||||||| |||||| Sbjct: 1566396 ctactcgaagatgggtagatcaagaggcttattctttgaccca 1566438
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1007_D04 Length = 125503 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 330 ccatctagagtctgatgttagctctgggtgaaatgcggtggcaaggatgttcccttgtcg 389 |||||||||||||||||| | ||||||||||| || || || |||||||||||||| | Sbjct: 3721 ccatctagagtctgatgtcaattctgggtgaaaagcagtagcgaggatgttcccttgcct 3780 Query: 390 tactgcaacaatcacccgatctttggagtacactt 424 ||| |||||||| ||||||||||| |||||||||| Sbjct: 3781 tacagcaacaattacccgatctttcgagtacactt 3815 Score = 87.7 bits (44), Expect = 4e-14 Identities = 130/161 (80%) Strand = Plus / Plus Query: 428 cctccacaccctcgccagatgttattgtaatgctgggtctgccagcaggaacagggcaat 487 |||| |||||||| ||||| | ||||||||| |||||||| | | |||||||| |||| Sbjct: 4597 cctcaacaccctctccagacgctattgtaatactgggtctatccgatggaacaggacaat 4656 Query: 488 cggccaatacttcaacatcctggcctacttctaggatagcaggtgctcgtataaatacnc 547 | |||| ||||||||||| ||||| || | |||||||||||||||||||||||| | Sbjct: 4657 ccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcgtataaatacgc 4716 Query: 548 cacgacatgtattactncctncttncttntntgnaagcatt 588 |||| ||||||| || ||| ||| ||| | || ||||||| Sbjct: 4717 cacggcatgtatcgctccctccttccttctctgcaagcatt 4757 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 198 ctactcgaaaatgggtagatcaggagccttattcttcgaccca 240 ||||||||| |||||||||||| ||| ||||||||| |||||| Sbjct: 3499 ctactcgaagatgggtagatcaagaggcttattctttgaccca 3541
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0576F08 Length = 135314 Score = 93.7 bits (47), Expect = 6e-16 Identities = 83/95 (87%) Strand = Plus / Plus Query: 330 ccatctagagtctgatgttagctctgggtgaaatgcggtggcaaggatgttcccttgtcg 389 |||||||||||||||||| | ||||||||||| || || || |||||||||||||| | Sbjct: 130039 ccatctagagtctgatgtcaattctgggtgaaaagcagtagcgaggatgttcccttgcct 130098 Query: 390 tactgcaacaatcacccgatctttggagtacactt 424 ||| |||||||| ||||||||||| |||||||||| Sbjct: 130099 tacagcaacaattacccgatctttcgagtacactt 130133 Score = 87.7 bits (44), Expect = 4e-14 Identities = 130/161 (80%) Strand = Plus / Plus Query: 428 cctccacaccctcgccagatgttattgtaatgctgggtctgccagcaggaacagggcaat 487 |||| |||||||| ||||| | ||||||||| |||||||| | | |||||||| |||| Sbjct: 130915 cctcaacaccctctccagacgctattgtaatactgggtctatccgatggaacaggacaat 130974 Query: 488 cggccaatacttcaacatcctggcctacttctaggatagcaggtgctcgtataaatacnc 547 | |||| ||||||||||| ||||| || | |||||||||||||||||||||||| | Sbjct: 130975 ccgccagtacttcaacatttgaacctacatccaagatagcaggtgctcgtataaatacgc 131034 Query: 548 cacgacatgtattactncctncttncttntntgnaagcatt 588 |||| ||||||| || ||| ||| ||| | || ||||||| Sbjct: 131035 cacggcatgtatcgctccctccttccttctctgcaagcatt 131075 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 198 ctactcgaaaatgggtagatcaggagccttattcttcgaccca 240 ||||||||| |||||||||||| ||| ||||||||| |||||| Sbjct: 129817 ctactcgaagatgggtagatcaagaggcttattctttgaccca 129859
>gb|AC147053.3| Mus musculus BAC clone RP23-87B16 from 6, complete sequence Length = 218532 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 463 ggtctgccagcaggaacagggc 484 |||||||||||||||||||||| Sbjct: 157035 ggtctgccagcaggaacagggc 157056
>gb|AC148332.3| Mus musculus BAC clone RP23-326L8 from 6, complete sequence Length = 229988 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 463 ggtctgccagcaggaacagggc 484 |||||||||||||||||||||| Sbjct: 94947 ggtctgccagcaggaacagggc 94926
>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence Length = 215490 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 463 ggtctgccagcaggaacagggc 484 |||||||||||||||||||||| Sbjct: 91268 ggtctgccagcaggaacagggc 91289
>ref|XM_447364.1| Candida glabrata CBS138 hypothetical protein (CAGL0I02574g) partial mRNA Length = 1206 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 285 ggcctttgcttgagattctttgtccatgt 313 ||||||| ||| ||||||||||||||||| Sbjct: 456 ggccttttcttcagattctttgtccatgt 428
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 285 ggcctttgcttgagattctttgtccatgt 313 ||||||| ||| ||||||||||||||||| Sbjct: 232848 ggccttttcttcagattctttgtccatgt 232820
>emb|BX294151.1| Pirellula sp. strain 1 complete genome; segment 19/24 Length = 295650 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 cagcaaccggatgatcaaatt 182 ||||||||||||||||||||| Sbjct: 171229 cagcaaccggatgatcaaatt 171249
>ref|XM_680316.1| PREDICTED: Danio rerio similar to solute carrier family 22, member 16 (LOC557279), mRNA Length = 1698 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 gccaatacttcaacatcctgg 510 ||||||||||||||||||||| Sbjct: 1331 gccaatacttcaacatcctgg 1311
>gb|DQ463038.1| Sorghum propinquum putative protein phosphatase 2C gene, exon 1 and partial cds Length = 2837 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 atttcggttttcctagctct 199 |||||||||||||||||||| Sbjct: 48 atttcggttttcctagctct 67
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 ggtctgccagcaggaacagg 482 |||||||||||||||||||| Sbjct: 355181 ggtctgccagcaggaacagg 355162
>gb|AC007393.3| Homo sapiens BAC clone RP11-451J3 from 7, complete sequence Length = 71082 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 tttggagcacaatggcaattattt 89 |||||||||||||||| ||||||| Sbjct: 25336 tttggagcacaatggccattattt 25359
>emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chromosome 13, complete sequence Length = 218144 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gaatcctttcctgtcagcaa 167 |||||||||||||||||||| Sbjct: 144258 gaatcctttcctgtcagcaa 144277
>emb|Z77132.1|CEF54D1 Caenorhabditis elegans Cosmid F54D1, complete sequence Length = 33266 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 attcttcgacccaacttctgcatt 251 ||||||| |||||||||||||||| Sbjct: 27948 attcttctacccaacttctgcatt 27971
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 ggtctgccagcaggaacagg 482 |||||||||||||||||||| Sbjct: 1923112 ggtctgccagcaggaacagg 1923093
>emb|CR376770.9| Zebrafish DNA sequence from clone DKEY-157L19 in linkage group 13, complete sequence Length = 49495 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 ttctgcattgtttgaagatg 262 |||||||||||||||||||| Sbjct: 5497 ttctgcattgtttgaagatg 5478
>gb|AC087393.7| Homo sapiens chromosome 17, clone RP11-746M1, complete sequence Length = 235968 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 ggcaaggatgttcccttgtc 388 |||||||||||||||||||| Sbjct: 153934 ggcaaggatgttcccttgtc 153915
>emb|BX511244.8| Zebrafish DNA sequence from clone DKEY-185L3 in linkage group 20, complete sequence Length = 116609 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 gccaatacttcaacatcctg 509 |||||||||||||||||||| Sbjct: 113767 gccaatacttcaacatcctg 113786
>emb|AL731712.6| Mouse DNA sequence from clone RP23-100M24 on chromosome 2, complete sequence Length = 215428 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 361 aatgcggtggcaaggatgttcccttgtc 388 |||| |||||||||||| |||||||||| Sbjct: 41936 aatgaggtggcaaggattttcccttgtc 41909 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,495,589 Number of Sequences: 3902068 Number of extensions: 4495589 Number of successful extensions: 78120 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78004 Number of HSP's gapped (non-prelim): 114 length of query: 588 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 565 effective length of database: 17,143,297,704 effective search space: 9685963202760 effective search space used: 9685963202760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
