ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal21c16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYL_BURMA (Q62H20) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 35 0.20
2ENTK_MOUSE (P97435) Enteropeptidase (EC 3.4.21.9) (Enterokinase)... 33 0.45
3SYL_BURPS (Q63QT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 33 0.58
4ATCU_VIBCH (Q9KPZ7) Copper-transporting P-type ATPase (EC 3.6.3.4) 31 2.9

>SYL_BURMA (Q62H20) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 864

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 267 VTCTIWKIMGCPCQFGRLL-SPLRKNQALALHDSNLSTVLRVRSDIMSVIRVTHD 106
           VT  +WK++G   +FG LL +P  K    AL  + +  VL+V   +   ++V  D
Sbjct: 770 VTFELWKVLGYADEFGPLLDAPWPKVDEAALEQAEIELVLQVNGKVRGALKVAKD 824



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>ENTK_MOUSE (P97435) Enteropeptidase (EC 3.4.21.9) (Enterokinase) [Contains:|
            Enteropeptidase non-catalytic heavy chain;
            Enteropeptidase catalytic light chain]
          Length = 1069

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -1

Query: 324  ITSLLHLSRSIERNIDQSPVTCTIWKIMGCPCQFGRLLSPLRKNQALALH-DSNLSTVLR 148
            + +L H  RS +R +  + +  + W +    C + R L P R    L LH  SNL++   
Sbjct: 844  VVALYHRDRSTDRLLCGASLVSSDWLVSAAHCVYRRNLDPTRWTAVLGLHMQSNLTSPQV 903

Query: 147  VRSDIMSVIRVTH 109
            VR  +  ++   H
Sbjct: 904  VRRVVDQIVINPH 916



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>SYL_BURPS (Q63QT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 864

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 267 VTCTIWKIMGCPCQFGRLL-SPLRKNQALALHDSNLSTVLRVRSDIMSVIRVTHD 106
           VT  +WK +G   +FG LL +P  K    AL  + +  VL+V   +   ++V  D
Sbjct: 770 VTFELWKALGYADEFGPLLDAPWPKVDEAALEQAEIELVLQVNGKVRGALKVAKD 824



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>ATCU_VIBCH (Q9KPZ7) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 915

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -1

Query: 357  QRTVVSS**ACITSLLHLSRSIERNIDQSPVTCTIWKIMGCPC-------QFGRLLSPLR 199
            Q T+++S    + S + LS++  RN+ Q+     I+  +G P         FG LLSP+ 
Sbjct: 825  QMTLLNSSPTSVVSAIELSKATLRNMKQNLFGAFIYNTLGIPIAAGVLYPAFGFLLSPVV 884

Query: 198  KNQALAL 178
               A+AL
Sbjct: 885  AGAAMAL 891


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,321,570
Number of Sequences: 219361
Number of extensions: 1599499
Number of successful extensions: 4096
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4093
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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