ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20n09 |
|---|---|
| Clone Library Name | barley_pub |
>RP28_BACTK (P62181) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 32.0 bits (71), Expect = 0.65 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 168 LGLVSYARSQSRDVCLXIQESSDLEKQVEIRDALDERQ 281 + L+ +S+S DV IQ S +LEK E D LDER+ Sbjct: 142 ISLIDILKSESEDVIDMIQLSMELEKIKEYIDILDERE 179
>RP28_BACCR (P62180) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 32.0 bits (71), Expect = 0.65 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 168 LGLVSYARSQSRDVCLXIQESSDLEKQVEIRDALDERQ 281 + L+ +S+S DV IQ S +LEK E D LDER+ Sbjct: 142 ISLIDILKSESEDVIDMIQLSMELEKIKEYIDILDERE 179
>RP28_BACAN (P62182) RNA polymerase sigma-28 factor precursor| Length = 237 Score = 32.0 bits (71), Expect = 0.65 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = +3 Query: 168 LGLVSYARSQSRDVCLXIQESSDLEKQVEIRDALDERQ 281 + L+ +S+S DV IQ S +LEK E D LDER+ Sbjct: 142 ISLIDILKSESEDVIDMIQLSMELEKIKEYIDILDERE 179
>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) Length = 1505 Score = 31.6 bits (70), Expect = 0.85 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +2 Query: 137 RR*GAGSPQAPRPGVLRTQPE*GRLPXHPGKQRSGEAGGNQ 259 RR G P++ RPG L P +LP +PG+Q S G +Q Sbjct: 411 RRKGKDQPESRRPGSLPAPPP-SQLPRNPGEQASNTNGTHQ 450
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/44 (40%), Positives = 19/44 (43%) Frame = +2 Query: 131 PRRR*GAGSPQAPRPGVLRTQPE*GRLPXHPGKQRSGEAGGNQR 262 PR G + PRPG P G P PG RS GGN R Sbjct: 194 PRPGGAVGGARPPRPGA----PRPGGRPGAPGAGRSDAGGGNYR 233
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/44 (40%), Positives = 19/44 (43%) Frame = +2 Query: 131 PRRR*GAGSPQAPRPGVLRTQPE*GRLPXHPGKQRSGEAGGNQR 262 PR G + PRPG P G P PG RS GGN R Sbjct: 194 PRPGGAVGGARPPRPGA----PRPGGRPGAPGAGRSDAGGGNYR 233
>ODP1_BUCAP (Q8K9T9) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)| Length = 888 Score = 30.0 bits (66), Expect = 2.5 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -1 Query: 146 LIDALAGQT*TNGEGLLKQETRCHLATCSLFSCVIY 39 LI +G+T NGEGL ++ H+ + ++ +CV Y Sbjct: 625 LIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCVSY 660
>PYGO2_HUMAN (Q9BRQ0) Pygopus homolog 2| Length = 406 Score = 30.0 bits (66), Expect = 2.5 Identities = 19/47 (40%), Positives = 20/47 (42%), Gaps = 1/47 (2%) Frame = -3 Query: 369 PALDGISGGKPWNSSAGER-AQEPHGSCKASAFRQAHL*FPPASPDR 232 P G GGKP N A QEPH A+A FPP S R Sbjct: 252 PGPGGEDGGKPLNPPASTAFPQEPHSGSPAAAVNGNQPSFPPNSSGR 298
>MDN1_HUMAN (Q9NU22) Midasin (MIDAS-containing protein)| Length = 5596 Score = 30.0 bits (66), Expect = 2.5 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Frame = +3 Query: 129 CQGVDEEPVALRHLGLVSYARSQSRDVCLXIQESSDLEKQVEIRD-----ALDERQMLCT 293 CQG + L + R + R +CL + S L + VE D + L + Sbjct: 4041 CQGAAPSGLEGELLRRLPKLRKRMRKMCLTFMKESPLPRLVEGLDQFTGEVISSVSELQS 4100 Query: 294 IHVAPERARRQRNSTVFHRKSRRERALGD 380 + V P + ++ S H +++RAL D Sbjct: 4101 LKVEPSAEKEKQRSEAKHILMQKQRALSD 4129
>MOXY_PARDE (P29905) Methanol utilization control sensor protein moxY (EC| 2.7.3.-) Length = 446 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -3 Query: 213 GRRPYSGCVRRTPGRGA*GLPAPHRRLGRSNINQWR 106 G+ P SG R TPG G G+ R LG + + WR Sbjct: 393 GKGPQSGTGRPTPGFGQIGIEDRARALGATYLPPWR 428
>ODP1_ECOLI (P0AFG8) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)| Length = 886 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 146 LIDALAGQT*TNGEGLLKQETRCHLATCSLFSCVIY 39 LI +G+T NGEGL ++ H+ + ++ +C+ Y Sbjct: 623 LIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISY 658
>ODP1_ECO57 (P0AFG9) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)| Length = 886 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 146 LIDALAGQT*TNGEGLLKQETRCHLATCSLFSCVIY 39 LI +G+T NGEGL ++ H+ + ++ +C+ Y Sbjct: 623 LIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISY 658
>ODP1_BUCAI (P57301) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)| Length = 887 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -1 Query: 146 LIDALAGQT*TNGEGLLKQETRCHLATCSLFSCVIY 39 LI +G+T NGEGL ++ H+ + ++ +C+ Y Sbjct: 624 LIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISY 659
>AT10A_HUMAN (O60312) Probable phospholipid-transporting ATPase VA (EC 3.6.3.1)| (ATPVA) (Aminophospholipid translocase VA) Length = 1499 Score = 29.3 bits (64), Expect = 4.2 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 7/87 (8%) Frame = +1 Query: 97 SKPSPLVYV*PAKASMRSR*PSGTSAWCPTHAARVGTSAXTSRKAAI-------WRSRWK 255 S P+P+ P +A +RS P G AA G S ++ W S W Sbjct: 1389 SAPAPMSSA-PGEAVLRS--PGGCPEESKVRAASTGRVTPLSSLFSLPTFSLLNWISSWS 1445 Query: 256 SEMRLTKGRCFARSMWLLSALAGRGIP 336 RL F+R+ L AGRG+P Sbjct: 1446 LVSRLGSVLQFSRTEQLADGQAGRGLP 1472
>ODP1_PSEAE (Q59637) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)| Length = 882 Score = 29.3 bits (64), Expect = 4.2 Identities = 14/36 (38%), Positives = 20/36 (55%) Frame = -1 Query: 146 LIDALAGQT*TNGEGLLKQETRCHLATCSLFSCVIY 39 LI AG+T NGEGL ++ HL ++ +C Y Sbjct: 617 LIGGTAGRTTLNGEGLQHEDGHSHLLASTIPNCRTY 652
>YPO4_CAEEL (P53015) Hypothetical protein F31E3.4| Length = 1131 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +3 Query: 120 CLTCQGVDEEPVALRHLGLVSYARSQSRDVCLXIQES---SDLEKQVEIRDALDERQMLC 290 C+ C+G+ ++ HL ++YA +C I++S D ++E D +M C Sbjct: 605 CIRCRGLQQQESVTDHLLKLNYAPVYQASLCQLIEKSLHIGDDSGEIECEDCKQMSRMEC 664
>SCW_DROME (P54631) Protein screw precursor| Length = 400 Score = 28.9 bits (63), Expect = 5.5 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = +2 Query: 74 NGTVFLVSVNPLHWFMFDLPRRR*GAGSPQAPRP 175 NG LV + L F DL +RR G GSP P P Sbjct: 256 NGPELLVKIQKLR-FKRDLEKRRAGGGSPPPPPP 288
>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2| Length = 913 Score = 28.9 bits (63), Expect = 5.5 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +2 Query: 149 AGSPQAPRPGVLRTQPE*GRLPXHPGKQRSGEAGGNQRCA*R-KADALHD 295 A PQAP+P + + + R +QRSG + QR A R + + LHD Sbjct: 76 AARPQAPQPRIHQPGGQQQRPGSSQSQQRSGSSAPQQRQADRPRGNVLHD 125
>ODP1_RALEU (Q59097) Pyruvate dehydrogenase E1 component (EC 1.2.4.1)| Length = 895 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 146 LIDALAGQT*TNGEGLLKQETRCHLATCSLFSCVIY 39 L+ AG+T NGEGL ++ H+ ++ +C+ Y Sbjct: 630 LLGGTAGRTTLNGEGLQHEDGHSHVFHAAIPNCISY 665
>Y4MH_RHISN (P55567) Hypothetical 33.9 kDa protein y4mH| Length = 297 Score = 28.5 bits (62), Expect = 7.2 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -3 Query: 426 MEVDNDFFLVPVKISDHQGPALDGISGGKPWNSSAGERAQEPHGSCKAS 280 +E+ DF V + I +H G +DG S + W + AQ P+ +CK S Sbjct: 172 LELARDFPDVQI-ILNHTGMQVDGPSHFEGWRKAMKTLAQAPNVACKIS 219
>WDR34_MOUSE (Q5U4F6) WD-repeat protein 34| Length = 535 Score = 28.5 bits (62), Expect = 7.2 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = +1 Query: 181 PTHAARVGT-SAXTSRKAAIWRSRWKSEMRLTKGRCFA 291 P H+ R SA T K +WR ++RLTKG A Sbjct: 277 PRHSHRFQVLSAATDGKVLLWRGSGAGQLRLTKGFALA 314
>GATA4_HUMAN (P43694) Transcription factor GATA-4 (GATA-binding factor 4)| Length = 442 Score = 28.5 bits (62), Expect = 7.2 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -3 Query: 372 GPALDGISGGKPWNSSAGERAQEPHGS---CKASAFRQAHL*FPPASPDRCFPGCXG 211 G A G SGG P +++G GS +A A A+ PP SP FPG G Sbjct: 60 GSASGGPSGGSPGGAASGAGPGTQQGSPGWSQAGATGAAYTP-PPVSPRFSFPGTTG 115
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/28 (42%), Positives = 13/28 (46%) Frame = +2 Query: 290 HDPCGS*ARSPAEEFHGFPPEIPSRAGP 373 HDPCG P E PP +P GP Sbjct: 2205 HDPCGPNPLEPGEIREYVPPPVPLPPGP 2232
>NPL4_RAT (Q9ES54) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Frame = -1 Query: 353 FPVENR---GIPLPASALRSHMDRAKHLPFVKRISDFHLLL 240 FP+ENR G +L +++ + F+ ISDFHLLL Sbjct: 470 FPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLL 510
>NPL4_MOUSE (P60670) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Frame = -1 Query: 353 FPVENR---GIPLPASALRSHMDRAKHLPFVKRISDFHLLL 240 FP+ENR G +L +++ + F+ ISDFHLLL Sbjct: 470 FPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLL 510
>NPL4_HUMAN (Q8TAT6) Nuclear protein localization protein 4 homolog (Protein| NPL4) Length = 607 Score = 28.1 bits (61), Expect = 9.4 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Frame = -1 Query: 353 FPVENR---GIPLPASALRSHMDRAKHLPFVKRISDFHLLL 240 FP+ENR G +L +++ + F+ ISDFHLLL Sbjct: 470 FPIENRDVLGETQDFHSLATYLSQNTSSVFLDTISDFHLLL 510
>RPSK_BACSU (P12254) RNA polymerase sigma-K factor precursor (Sigma-27)| Length = 294 Score = 28.1 bits (61), Expect = 9.4 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +3 Query: 168 LGLVSYARSQSRDVCLXIQESSDLEKQVEIRDALDERQ 281 + L+ +S++ DV IQ + +LEK + D LD+R+ Sbjct: 196 ISLIDVLKSENEDVIDTIQLNMELEKVKQYIDILDDRE 233
>SPEA_PASMU (Q9CL60) Biosynthetic arginine decarboxylase (EC 4.1.1.19) (ADC)| Length = 644 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = -3 Query: 414 NDFFLVPVKISDHQGPALDGISGGKPWNSSAGERAQ 307 N F + P+K++ H+ IS G+P AG +A+ Sbjct: 105 NYFLVYPIKVNQHRRIVESLISSGQPLGLEAGSKAE 140
>EFG1_VIBCH (Q9KUZ7) Elongation factor G 1 (EF-G 1)| Length = 698 Score = 28.1 bits (61), Expect = 9.4 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = -1 Query: 284 HLPFVKRISDFHLLLQIAAFLDVKADVPTLAACVGHQAEVPEGYRLLIDALAGQT*TNGE 105 H+ ++R+ ++QIA KAD + +G A +R+ DA GQT +G Sbjct: 400 HVVILERMEFPEPVIQIAVEPRSKADQEKMGIALGKLAAEDPSFRVETDAETGQTLISGM 459 Query: 104 GLL 96 G L Sbjct: 460 GEL 462 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,202,439 Number of Sequences: 219361 Number of extensions: 1573105 Number of successful extensions: 4659 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4656 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
