| Clone Name | rbaal20n09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 428 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 19698726 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 19698780
>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0048D08 Length = 145772 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 428 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 30732 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 30786
>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041J06 Length = 138157 Score = 93.7 bits (47), Expect = 4e-16 Identities = 53/55 (96%) Strand = Plus / Plus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccatgg 428 |||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 137376 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccatgg 137430
>ref|XM_480621.1| Oryza sativa (japonica cultivar-group), mRNA Length = 537 Score = 89.7 bits (45), Expect = 7e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 527 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 475
>ref|NM_189382.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 89.7 bits (45), Expect = 7e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 962 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 910
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 89.7 bits (45), Expect = 7e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 6250272 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 6250220
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 89.7 bits (45), Expect = 7e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 42465665 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 42465613 Score = 83.8 bits (42), Expect = 4e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 377 tgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 15627983 tgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 15627934 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 223 aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 282 ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || ||| Sbjct: 15631081 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 15631022 Query: 283 tgctttgcacgatccatgtggctcctgagcgcgctc 318 ||||| |||||||||| ||||||| ||||||||||| Sbjct: 15631021 tgcttagcacgatccaggtggctcttgagcgcgctc 15630986
>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483G10 Length = 190721 Score = 89.7 bits (45), Expect = 7e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 125003 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 124951
>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1734_E04 Length = 101439 Score = 89.7 bits (45), Expect = 7e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 36409 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 36357
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 89.7 bits (45), Expect = 7e-15 Identities = 51/53 (96%) Strand = Plus / Minus Query: 374 tggtgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 |||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 113665 tggtgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 113613
>ref|NM_193885.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1248 Score = 83.8 bits (42), Expect = 4e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 377 tgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 992 tgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 943 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 223 aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 282 ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || ||| Sbjct: 1145 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 1086 Query: 283 tgctttgcacgatccatgtggctcctgagcgcgctc 318 ||||| |||||||||| ||||||| ||||||||||| Sbjct: 1085 tgcttagcacgatccaggtggctcttgagcgcgctc 1050
>dbj|AP002968.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0416G11 Length = 138858 Score = 83.8 bits (42), Expect = 4e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 377 tgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 65880 tgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 65831 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 223 aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 282 ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || ||| Sbjct: 68978 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 68919 Query: 283 tgctttgcacgatccatgtggctcctgagcgcgctc 318 ||||| |||||||||| ||||||| ||||||||||| Sbjct: 68918 tgcttagcacgatccaggtggctcttgagcgcgctc 68883
>dbj|AK107503.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-E03, full insert sequence Length = 2089 Score = 83.8 bits (42), Expect = 4e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 377 tgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1031 tgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 982
>dbj|AK059266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-B02, full insert sequence Length = 1478 Score = 83.8 bits (42), Expect = 4e-13 Identities = 48/50 (96%) Strand = Plus / Minus Query: 377 tgatcggagatcttgacgggcaccaggaagaagtcattgtccacctccat 426 ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1035 tgatcagagatcttgacaggcaccaggaagaagtcattgtccacctccat 986 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 223 aggaaagcagcgatctggagaagcaggtggaaatcagagatgcgcttgacgaaaggcaga 282 ||||||||||| | | |||| || |||||||| || ||||| ||||| || || || ||| Sbjct: 1188 aggaaagcagcaaccaggaggagaaggtggaagtccgagatccgcttaacaaatggtaga 1129 Query: 283 tgctttgcacgatccatgtggctcctgagcgcgctc 318 ||||| |||||||||| ||||||| ||||||||||| Sbjct: 1128 tgcttagcacgatccaggtggctcttgagcgcgctc 1093
>emb|AL022575.1|HS159A15 Human DNA sequence from clone RP1-159A15 on chromosome X Contains the 3' end of a novel gene, complete sequence Length = 71934 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 tccattggtttatgtttgacc 128 ||||||||||||||||||||| Sbjct: 42126 tccattggtttatgtttgacc 42106
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 gagcgggcccttggtgatcgg 383 ||||||||||||||||||||| Sbjct: 1673486 gagcgggcccttggtgatcgg 1673466
>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence Length = 215303 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 caccaggaagaagtcattgtc 417 ||||||||||||||||||||| Sbjct: 175061 caccaggaagaagtcattgtc 175081
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 gagcgggcccttggtgatcgg 383 ||||||||||||||||||||| Sbjct: 2144751 gagcgggcccttggtgatcgg 2144731
>gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.1090_M_7, complete sequence Length = 205150 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 ctctccattggtttatgtttgacct 129 |||||||||||||||||||| |||| Sbjct: 38714 ctctccattggtttatgttttacct 38690
>gb|CP000224.1| Drosophila melanogaster genomic scaffold 211000022280794 Length = 474727 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 caggaaagcagcgatctggag 242 ||||||||||||||||||||| Sbjct: 295135 caggaaagcagcgatctggag 295155
>gb|AC101706.9| Mus musculus chromosome 15, clone RP23-256L18, complete sequence Length = 170006 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ctctccattggtttatgttt 124 |||||||||||||||||||| Sbjct: 152564 ctctccattggtttatgttt 152545
>gb|AC147633.3| Mus musculus BAC clone RP23-302B3 from chromosome 13, complete sequence Length = 218640 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 agacattcatataaattaca 48 |||||||||||||||||||| Sbjct: 17866 agacattcatataaattaca 17885
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ttggtgatcggagatcttga 392 |||||||||||||||||||| Sbjct: 1025945 ttggtgatcggagatcttga 1025964
>gb|AC122906.4| Mus musculus BAC clone RP23-47D11 from 10, complete sequence Length = 191190 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 catataaattacacatgaga 55 |||||||||||||||||||| Sbjct: 72888 catataaattacacatgaga 72869
>gb|AC121880.2| Mus musculus BAC clone RP24-132E6 from 13, complete sequence Length = 143546 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 agacattcatataaattaca 48 |||||||||||||||||||| Sbjct: 101632 agacattcatataaattaca 101613
>gb|AC158907.2| Mus musculus chromosome 15, clone RP24-266D22, complete sequence Length = 146781 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 ctctccattggtttatgttt 124 |||||||||||||||||||| Sbjct: 77129 ctctccattggtttatgttt 77148
>gb|AF443118.1|AF443118 Gossypium hirsutum polyphosphoinositide binding protein (Ssh2) mRNA, complete cds Length = 955 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 gtgatcggagatcttgacgg 395 |||||||||||||||||||| Sbjct: 476 gtgatcggagatcttgacgg 495
>gb|AC004971.3| Homo sapiens PAC clone RP5-1125K23 from 7, complete sequence Length = 123253 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 120 tgtttgacctgccaaggcgtcgatgagg 147 |||||||||||||||||| || |||||| Sbjct: 109064 tgtttgacctgccaaggcttccatgagg 109091
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ttggtgatcggagatcttga 392 |||||||||||||||||||| Sbjct: 1025943 ttggtgatcggagatcttga 1025962
>dbj|AB052134.1| Macaca fascicularis brain cDNA, clone:QccE-18183, similar to human histone deacetylase 1(HDAC11), mRNA, NM_024827.1 Length = 3160 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 caggtggaaatcagagatgc 265 |||||||||||||||||||| Sbjct: 2308 caggtggaaatcagagatgc 2327
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ttggtgatcggagatcttga 392 |||||||||||||||||||| Sbjct: 46160 ttggtgatcggagatcttga 46179
>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence Length = 190773 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 cctgagacattcatataaattaca 48 |||||||| ||||||||||||||| Sbjct: 17012 cctgagactttcatataaattaca 16989
>gb|AC147615.3| Mus musculus BAC clone RP23-408N24 from 10, complete sequence Length = 205962 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 catataaattacacatgaga 55 |||||||||||||||||||| Sbjct: 49124 catataaattacacatgaga 49105 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,462,589 Number of Sequences: 3902068 Number of extensions: 3462589 Number of successful extensions: 64359 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64180 Number of HSP's gapped (non-prelim): 179 length of query: 431 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 409 effective length of database: 17,147,199,772 effective search space: 7013204706748 effective search space used: 7013204706748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)