ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal21c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK072081.1| Oryza sativa (japonica cultivar-group) cDNA clon... 331 2e-87
2dbj|AK060388.1| Oryza sativa (japonica cultivar-group) cDNA clon... 331 2e-87
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
4dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
5ref|NM_193993.1| Oryza sativa (japonica cultivar-group), predic... 66 1e-07
6dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
7gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C... 44 0.52
8ref|NM_205069.1| Gallus gallus integrin, alpha 1 (ITGA1), mRNA 42 2.0
9dbj|AB000470.1| Gallus gallus mRNA for alpha1 integrin, complete... 42 2.0
10gb|AY772391.1| Danio rerio protocadherin 15b mRNA, complete cds 40 8.1
11ref|NM_117612.2| Arabidopsis thaliana transferase, transferring ... 40 8.1
12gb|AC120989.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
13gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.1
14gb|AC143357.1| Pan troglodytes BAC clone RP43-171L24 from 7, com... 40 8.1
15gb|AC006029.2| Homo sapiens BAC clone GS1-195F7 from 7q31.2-q32,... 40 8.1
16emb|AL359708.8| Human DNA sequence from clone RP11-171O14 on chr... 40 8.1
17emb|AL359741.9| Human DNA sequence from clone RP11-161P17 on chr... 40 8.1
18emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chr... 40 8.1
19emb|AL137250.17| Human DNA sequence from clone RP11-347L8 on chr... 40 8.1
20emb|BX510655.18| Zebrafish DNA sequence from clone DKEY-94J16 in... 40 8.1
21emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chro... 40 8.1
22emb|BX957226.10| Zebrafish DNA sequence from clone CH211-110P13 ... 40 8.1
23gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.1
24gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence 40 8.1
25gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 8.1
26gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 8.1
27gb|AC148671.1| Macaca mulatta Major Histocompatibility Complex B... 40 8.1
28dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
29emb|AL935329.11| Zebrafish DNA sequence from clone CH211-253P2 i... 40 8.1
30emb|BX828237.1|CNS0A3YF Arabidopsis thaliana Full-length cDNA Co... 40 8.1
31ref|NM_001012486.1| Danio rerio protocadherin 15b (pcdh15b), mRNA 40 8.1
32dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding pr... 40 8.1
33ref|NM_211718.1| Eremothecium gossypii AGL010Wp (AGL010W), mRNA 40 8.1
34emb|BX537311.3| Mouse DNA sequence from clone RP24-315O23 on chr... 40 8.1
35emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 8.1
36emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, ... 40 8.1
37emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chro... 40 8.1
38emb|X94354.1|HSCGMPPDE H.sapiens DNA for Cone cGMP-PDE gene 40 8.1

>dbj|AK072081.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G03, full
            insert sequence
          Length = 1683

 Score =  331 bits (167), Expect = 2e-87
 Identities = 320/371 (86%)
 Strand = Plus / Minus

                                                                        
Query: 219  cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 278
            |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 1387 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 1328

                                                                        
Query: 279  tttggcatgcctcttccggatcttctcacacgaccatcaagacggagaattatgtagaca 338
            ||||||||||||||||| |||||||| ||||||||||| |  ||||| ||||| ||||||
Sbjct: 1327 tttggcatgcctcttccagatcttctgacacgaccatccaatcggaggattatatagaca 1268

                                                                        
Query: 339  tcttcaccaggagtgacaccttccgattcttgctgatcacgtatccaactttcccattgt 398
            |||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 1267 tcttcaccgggagtgacaccttcagactcttgctggtcacgtatccaactttcccattgt 1208

                                                                        
Query: 399  tctggagagacaatatcggctttaaatcgaacctcggctctgagtcgtgattttgccgca 458
            || |||||||||||||| || ||||||||  | || ||| | |  |||||||| || |||
Sbjct: 1207 tcaggagagacaatatcagccttaaatcgctcttcagcttttaaccgtgatttcgctgca 1148

                                                                        
Query: 459  atagattcagtacgtttttcaaagtcgcccccaattgaaggagctgatgcagcagatctt 518
            |||||||||||||| || ||||||||  |||||| |||||||||||||||||||||||||
Sbjct: 1147 atagattcagtacgcttctcaaagtcatccccaactgaaggagctgatgcagcagatctt 1088

                                                                        
Query: 519  gtagtaccgaagccttttggtttgccttggactttttgtgaagcaccaaagatcacagga 578
            | | | || |||||| |||| || | |||| |||| || |||||||||||||||||||||
Sbjct: 1087 gaacttccaaagcctcttggcttactttgggctttctgagaagcaccaaagatcacagga 1028

                       
Query: 579  attagaagaac 589
            |||||||||||
Sbjct: 1027 attagaagaac 1017



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>dbj|AK060388.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G10, full
            insert sequence
          Length = 1542

 Score =  331 bits (167), Expect = 2e-87
 Identities = 320/371 (86%)
 Strand = Plus / Minus

                                                                        
Query: 219  cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 278
            |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 1389 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 1330

                                                                        
Query: 279  tttggcatgcctcttccggatcttctcacacgaccatcaagacggagaattatgtagaca 338
            ||||||||||||||||| |||||||| ||||||||||| |  ||||| ||||| ||||||
Sbjct: 1329 tttggcatgcctcttccagatcttctgacacgaccatccaatcggaggattatatagaca 1270

                                                                        
Query: 339  tcttcaccaggagtgacaccttccgattcttgctgatcacgtatccaactttcccattgt 398
            |||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 1269 tcttcaccgggagtgacaccttcagactcttgctggtcacgtatccaactttcccattgt 1210

                                                                        
Query: 399  tctggagagacaatatcggctttaaatcgaacctcggctctgagtcgtgattttgccgca 458
            || |||||||||||||| || ||||||||  | || ||| | |  |||||||| || |||
Sbjct: 1209 tcaggagagacaatatcagccttaaatcgctcttcagcttttaaccgtgatttcgctgca 1150

                                                                        
Query: 459  atagattcagtacgtttttcaaagtcgcccccaattgaaggagctgatgcagcagatctt 518
            |||||||||||||| || ||||||||  |||||| |||||||||||||||||||||||||
Sbjct: 1149 atagattcagtacgcttctcaaagtcatccccaactgaaggagctgatgcagcagatctt 1090

                                                                        
Query: 519  gtagtaccgaagccttttggtttgccttggactttttgtgaagcaccaaagatcacagga 578
            | | | || |||||| |||| || | |||| |||| || |||||||||||||||||||||
Sbjct: 1089 gaacttccaaagcctcttggcttactttgggctttctgagaagcaccaaagatcacagga 1030

                       
Query: 579  attagaagaac 589
            |||||||||||
Sbjct: 1029 attagaagaac 1019



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                            
Query: 289      ctcttccggatcttctcacacgaccatcaagacggagaattatgtagacatcttcaccag 348
                ||||||| |||||||| ||||||||||| |  ||||| ||||| |||||||||||||| |
Sbjct: 14490143 ctcttccagatcttctgacacgaccatccaatcggaggattatatagacatcttcaccgg 14490202

                                                        
Query: 349      gagtgacaccttccgattcttgctgatcacgtatccaact 388
                ||||||||||||| || |||||||| ||||||||||||||
Sbjct: 14490203 gagtgacaccttcagactcttgctggtcacgtatccaact 14490242



 Score =  109 bits (55), Expect = 1e-20
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                            
Query: 487      ccccaattgaaggagctgatgcagcagatcttgtagtaccgaagccttttggtttgcctt 546
                |||||| |||||||||||||||||||||||||| | | || |||||| |||| || | ||
Sbjct: 14491691 ccccaactgaaggagctgatgcagcagatcttgaacttccaaagcctcttggcttacttt 14491750

                                                           
Query: 547      ggactttttgtgaagcaccaaagatcacaggaattagaagaac 589
                || |||| || ||||||||||||||||||||||||||||||||
Sbjct: 14491751 gggctttctgagaagcaccaaagatcacaggaattagaagaac 14491793



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                            
Query: 387      ctttcccattgttctggagagacaatatcggctttaaatcgaacctcggctctgagtcgt 446
                |||||||||||||| |||||||||||||| || ||||||||  | || ||| | |  |||
Sbjct: 14491480 ctttcccattgttcaggagagacaatatcagccttaaatcgctcttcagcttttaaccgt 14491539

                                                      
Query: 447      gattttgccgcaatagattcagtacgtttttcaaagtc 484
                ||||| || ||||||||||||||||| || ||||||||
Sbjct: 14491540 gatttcgctgcaatagattcagtacgcttctcaaagtc 14491577



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                            
Query: 219      cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 278
                |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 14489851 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 14489910

                           
Query: 279      tttggcatgcc 289
                |||||||||||
Sbjct: 14489911 tttggcatgcc 14489921



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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0514H03
          Length = 167230

 Score =  111 bits (56), Expect = 3e-21
 Identities = 89/100 (89%)
 Strand = Plus / Plus

                                                                         
Query: 289   ctcttccggatcttctcacacgaccatcaagacggagaattatgtagacatcttcaccag 348
             ||||||| |||||||| ||||||||||| |  ||||| ||||| |||||||||||||| |
Sbjct: 49456 ctcttccagatcttctgacacgaccatccaatcggaggattatatagacatcttcaccgg 49515

                                                     
Query: 349   gagtgacaccttccgattcttgctgatcacgtatccaact 388
             ||||||||||||| || |||||||| ||||||||||||||
Sbjct: 49516 gagtgacaccttcagactcttgctggtcacgtatccaact 49555



 Score =  109 bits (55), Expect = 1e-20
 Identities = 91/103 (88%)
 Strand = Plus / Plus

                                                                         
Query: 487   ccccaattgaaggagctgatgcagcagatcttgtagtaccgaagccttttggtttgcctt 546
             |||||| |||||||||||||||||||||||||| | | || |||||| |||| || | ||
Sbjct: 51004 ccccaactgaaggagctgatgcagcagatcttgaacttccaaagcctcttggcttacttt 51063

                                                        
Query: 547   ggactttttgtgaagcaccaaagatcacaggaattagaagaac 589
             || |||| || ||||||||||||||||||||||||||||||||
Sbjct: 51064 gggctttctgagaagcaccaaagatcacaggaattagaagaac 51106



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 83/98 (84%)
 Strand = Plus / Plus

                                                                         
Query: 387   ctttcccattgttctggagagacaatatcggctttaaatcgaacctcggctctgagtcgt 446
             |||||||||||||| |||||||||||||| || ||||||||  | || ||| | |  |||
Sbjct: 50793 ctttcccattgttcaggagagacaatatcagccttaaatcgctcttcagcttttaaccgt 50852

                                                   
Query: 447   gattttgccgcaatagattcagtacgtttttcaaagtc 484
             ||||| || ||||||||||||||||| || ||||||||
Sbjct: 50853 gatttcgctgcaatagattcagtacgcttctcaaagtc 50890



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                         
Query: 219   cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 278
             |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 49164 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 49223

                        
Query: 279   tttggcatgcc 289
             |||||||||||
Sbjct: 49224 tttggcatgcc 49234



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>ref|NM_193993.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 813

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 42/45 (93%)
 Strand = Plus / Minus

                                                        
Query: 545 ttggactttttgtgaagcaccaaagatcacaggaattagaagaac 589
           |||| |||| || ||||||||||||||||||||||||||||||||
Sbjct: 765 ttgggctttctgagaagcaccaaagatcacaggaattagaagaac 721



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>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025H06
          Length = 151547

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                          
Query: 219    cgttcaagtttgctgagcaaatcttcaagacgtggcaattccttcaaaatatcattccag 278
              |||||||||||||| ||||  |||||||| ||||| | ||||| ||| || || ||||| 
Sbjct: 151248 cgttcaagtttgctcagcagttcttcaagtcgtggaagttcctgcaatatgtcgttccaa 151307

                         
Query: 279    tttggcatgcc 289
              |||||||||||
Sbjct: 151308 tttggcatgcc 151318



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>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177115

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 530   gccttttggtttgccttggacttttt 555
             |||||||||||||||||| |||||||
Sbjct: 15254 gccttttggtttgccttgtacttttt 15229



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>ref|NM_205069.1| Gallus gallus integrin, alpha 1 (ITGA1), mRNA
          Length = 3926

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 257  ttccttcaaaatatcattcca 277
            |||||||||||||||||||||
Sbjct: 2950 ttccttcaaaatatcattcca 2970



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>dbj|AB000470.1| Gallus gallus mRNA for alpha1 integrin, complete cds
          Length = 3926

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 257  ttccttcaaaatatcattcca 277
            |||||||||||||||||||||
Sbjct: 2950 ttccttcaaaatatcattcca 2970



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>gb|AY772391.1| Danio rerio protocadherin 15b mRNA, complete cds
          Length = 6059

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   aagaccttcacctctgtttt 77
            ||||||||||||||||||||
Sbjct: 3723 aagaccttcacctctgtttt 3742



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>ref|NM_117612.2| Arabidopsis thaliana transferase, transferring glycosyl groups
            AT4G15240 mRNA, complete cds
          Length = 1815

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  tcttccggatcttctcacac 309
            ||||||||||||||||||||
Sbjct: 1080 tcttccggatcttctcacac 1099



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>gb|AC120989.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0032D15,
              complete sequence
          Length = 161968

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    aacatgatggtcaatctctg 137
              ||||||||||||||||||||
Sbjct: 136227 aacatgatggtcaatctctg 136208



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>gb|AC104274.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1171_H02,
            complete sequence
          Length = 109969

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 118  aacatgatggtcaatctctg 137
            ||||||||||||||||||||
Sbjct: 7854 aacatgatggtcaatctctg 7835



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>gb|AC143357.1| Pan troglodytes BAC clone RP43-171L24 from 7, complete sequence
          Length = 181482

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    ttatgtagacatcttcaccaggag 351
              ||||| ||||||||||||||||||
Sbjct: 113028 ttatgaagacatcttcaccaggag 113051



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>gb|AC006029.2| Homo sapiens BAC clone GS1-195F7 from 7q31.2-q32, complete sequence
          Length = 143851

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 328   ttatgtagacatcttcaccaggag 351
             ||||| ||||||||||||||||||
Sbjct: 36558 ttatgaagacatcttcaccaggag 36581



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>emb|AL359708.8| Human DNA sequence from clone RP11-171O14 on chromosome 13 Contains
            the 5' end of the TGDS gene for dTDP-D-glucose
            4,6-dehydratase, a novel gene (possible ortholog of mouse
            AB041545), the gene for a novel protein similar to NADH
            dehydrogenase (ubiquinone) 1 alpha subcomplex 3 9kDa
            (NDUFA3) and a CpG island, complete sequence
          Length = 50083

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  ttcaaaatatcattccagtt 280
            ||||||||||||||||||||
Sbjct: 5063 ttcaaaatatcattccagtt 5044



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>emb|AL359741.9| Human DNA sequence from clone RP11-161P17 on chromosome 13 Contains a
              novel pseudogene, complete sequence
          Length = 139877

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    aacatgatggtcaatctctg 137
              ||||||||||||||||||||
Sbjct: 126850 aacatgatggtcaatctctg 126831



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>emb|AL356214.20| Human DNA sequence from clone RP11-30E16 on chromosome 10 Contains the
              C10orf3 gene for chromosome 10 open reading frame 3, the
              RBP4 gene for retinol binding protein 4 (plasma), the 5'
              end of the PDE6C gene for phosphodiesterase 6C
              (cGMP-specific, cone, alpha prime), the GPR120 gene for G
              protein-coupled receptor 120 and three CpG islands,
              complete sequence
          Length = 163964

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    ccttcaaaatatcattccag 278
              ||||||||||||||||||||
Sbjct: 151151 ccttcaaaatatcattccag 151132



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>emb|AL137250.17| Human DNA sequence from clone RP11-347L8 on chromosome 13, complete
             sequence
          Length = 110733

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   tctggagagacaatatcggcttta 422
             |||||||||||||||| |||||||
Sbjct: 96524 tctggagagacaatatgggcttta 96501



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>emb|BX510655.18| Zebrafish DNA sequence from clone DKEY-94J16 in linkage group 5, complete
              sequence
          Length = 205761

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     tctgtttttgcataagaact 89
              ||||||||||||||||||||
Sbjct: 120213 tctgtttttgcataagaact 120232



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>emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chromosome 11 Contains two
              novel genes, the 5' end of the Accn1 gene for neuronal
              amiloride-sensitive cation channel 1 (degenerin) and the
              Ccl2 and Ccl7 genes for chemokine (C-C motif) ligand 2 and
              7, complete sequence
          Length = 223726

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    atgatggtcaatctctgtgc 140
              ||||||||||||||||||||
Sbjct: 195825 atgatggtcaatctctgtgc 195844



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>emb|BX957226.10| Zebrafish DNA sequence from clone CH211-110P13 in linkage group 5,
              complete sequence
          Length = 149414

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 70     tctgtttttgcataagaact 89
              ||||||||||||||||||||
Sbjct: 103930 tctgtttttgcataagaact 103949



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 500    agctgatgcagcagatcttg 519
              ||||||||||||||||||||
Sbjct: 887453 agctgatgcagcagatcttg 887434



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>gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence
          Length = 179810

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    ggagaattatgtagacatct 341
              ||||||||||||||||||||
Sbjct: 134386 ggagaattatgtagacatct 134367



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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 498    ggagctgatgcagcagatct 517
              ||||||||||||||||||||
Sbjct: 702841 ggagctgatgcagcagatct 702860



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 183     ggaagaaaacgaaacccatatacacata 210
               ||||||||| ||||| ||||||||||||
Sbjct: 4937456 ggaagaaaaagaaacgcatatacacata 4937483



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>gb|AC148671.1| Macaca mulatta Major Histocompatibility Complex BAC MMU065H09, complete
             sequence
          Length = 177726

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   tagacatcttcaccaggagt 352
             ||||||||||||||||||||
Sbjct: 86703 tagacatcttcaccaggagt 86722



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     aacatgatggtcaatctctg 137
               ||||||||||||||||||||
Sbjct: 9025857 aacatgatggtcaatctctg 9025838



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>emb|AL935329.11| Zebrafish DNA sequence from clone CH211-253P2 in linkage group 12,
             complete sequence
          Length = 172778

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    aagaccttcacctctgtttt 77
             ||||||||||||||||||||
Sbjct: 86523 aagaccttcacctctgtttt 86504



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>emb|BX828237.1|CNS0A3YF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH66ZD08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2095

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 290  tcttccggatcttctcacac 309
            ||||||||||||||||||||
Sbjct: 1399 tcttccggatcttctcacac 1418



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>ref|NM_001012486.1| Danio rerio protocadherin 15b (pcdh15b), mRNA
          Length = 6059

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   aagaccttcacctctgtttt 77
            ||||||||||||||||||||
Sbjct: 3723 aagaccttcacctctgtttt 3742



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>dbj|AB124586.1| Pan troglodytes RBP4 gene for retinol binding protein4, complete cds
          Length = 173042

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ccttcaaaatatcattccag 278
             ||||||||||||||||||||
Sbjct: 76761 ccttcaaaatatcattccag 76780



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>ref|NM_211718.1| Eremothecium gossypii AGL010Wp (AGL010W), mRNA
          Length = 2406

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 498 ggagctgatgcagcagatct 517
           ||||||||||||||||||||
Sbjct: 51  ggagctgatgcagcagatct 70



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>emb|BX537311.3| Mouse DNA sequence from clone RP24-315O23 on chromosome 4, complete
            sequence
          Length = 6715

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  acccatatacacatagtttt 215
            ||||||||||||||||||||
Sbjct: 4087 acccatatacacatagtttt 4068



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>emb|Z97338.2|ATFCA3 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 3
          Length = 200252

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   tcttccggatcttctcacac 309
             ||||||||||||||||||||
Sbjct: 68644 tcttccggatcttctcacac 68625



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>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41
          Length = 197419

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   tcttccggatcttctcacac 309
             ||||||||||||||||||||
Sbjct: 22121 tcttccggatcttctcacac 22102



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>emb|AL670673.15| Mouse DNA sequence from clone RP23-32L5 on chromosome 4, complete
            sequence
          Length = 202412

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  acccatatacacatagtttt 215
            ||||||||||||||||||||
Sbjct: 2093 acccatatacacatagtttt 2074



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>emb|X94354.1|HSCGMPPDE H.sapiens DNA for Cone cGMP-PDE gene
          Length = 13975

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  ccttcaaaatatcattccag 278
            ||||||||||||||||||||
Sbjct: 8659 ccttcaaaatatcattccag 8640


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,752,604
Number of Sequences: 3902068
Number of extensions: 4752604
Number of successful extensions: 114835
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114672
Number of HSP's gapped (non-prelim): 163
length of query: 593
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 570
effective length of database: 17,143,297,704
effective search space: 9771679691280
effective search space used: 9771679691280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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