>YFE2_YEAST (P43560) Hypothetical 76.3 kDa protein in SEC53-FET5 intergenic|
           region
          Length = 674

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = +2

Query: 176 SXKKATYF------STCKVKIYMRRKEEGNFLKYIQGLRNLLQTLLPASSVSTLLRYLLE 337
           S +KA +F      +TC V   ++RK+   + + I  +R     +    S ST  RYL+ 
Sbjct: 471 SYEKALHFPAGPKSTTCYVAEVIKRKDPDTYYEVISSIRT--PNVPSGGSFSTKTRYLIR 528

Query: 338 INFQLSCNLYIS 373
            N +++C L +S
Sbjct: 529 WNDEITCLLRVS 540

>RS8_SPIKU (Q6XYX4) 30S ribosomal protein S8|
          Length = 129

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 249 KLPSSFLRM*ILTLQVLKYVAFFXDIKTLQALKKDLLMTLLYK 121
           K+PSS  +M +   ++LK   +  D K    +KKDL +TL YK
Sbjct: 25  KMPSS--KMKVRIAEILKKEGYVEDFKVSGDIKKDLTLTLKYK 65

>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic|
           region
          Length = 551

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
 Frame = +2

Query: 311 STLLRYLLEINFQLSCNLYISST*SSVSQRKEPNAMASSSSLFRDAGSSITASSISVEPI 490
           S+LL     ++ +LS +    S+ S+ S   E  + +SSSS+   + SS   SS S  P 
Sbjct: 90  SSLLTLSSTLSSELSSSSMQVSSSSTSSSSSEVTSSSSSSSISPSSSSSTIISSSSSLPT 149

Query: 491 F---SPKSAQLCFSMRLQASLVRSFAHNSKVFGSKPIM*LFRS*GSTT 625
           F   S  S     ++   +SLV S + ++  F S+    L  S  ST+
Sbjct: 150 FTVASTSSTVASSTLSTSSSLVISTSSSTFTFSSESSSSLISSSISTS 197

>DCK_HUMAN (P27707) Deoxycytidine kinase (EC 2.7.1.74) (dCK)|
          Length = 260

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +2

Query: 74  TECKRMPKWA-YAYWHHLYNKVISRSFFSACKVFISXKKATYFSTCKVKIYMR--RKEEG 244
           +EC    +W  Y  WH   N    +S      +++         TC  +IY+R   +E+G
Sbjct: 144 SECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATP----ETCLHRIYLRGRNEEQG 199

Query: 245 NFLKYIQGLRNLLQTLLPASSVSTLLRYLLEI 340
             L+Y++ L    ++ L   ++ T   YL E+
Sbjct: 200 IPLEYLEKLHYKHESWLLHRTLKTNFDYLQEV 231

>PIG1_YEAST (Q06216) Serine/threonine-protein phosphatase 1 regulatory subunit|
           PIG1
          Length = 648

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +2

Query: 320 LRYLLEINFQLSCNLYISST*SSVSQRKEPNAMASSSSLFRDAGSSIT-ASSISVEPIFS 496
           L+  L++   +S + ++SST S+     E +  ASSS+    +G S+  A+ +     F+
Sbjct: 9   LKPSLKLAKTISTSSFVSSTTSNSFSPLEDSTSASSSTSSSSSGKSVRFAAHLYTVKKFN 68

Query: 497 PKSAQLCFSMRLQASLVRSFAHNS 568
            K A +  S +  ++L R+  +N+
Sbjct: 69  TKLAPISISEKAASNLTRNLHNNA 92

>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 465  PRQSPWSPSFLQRVPSCASR*DYKPR*SAASRITPRSLGRSPSCNSSGHEDQQQN 629
            P  SP SPS+    PS      Y P    + + +PRS   SPS N++  E + +N
Sbjct: 1697 PSYSPTSPSYSPTSPS------YSP---TSPQYSPRSPSYSPSFNNNDKEQKDEN 1742


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,724,725
Number of Sequences: 219361
Number of extensions: 1857068
Number of successful extensions: 4856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4850
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)