Clone Name	rbaal21c03
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome...	131	3e-27
2	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
3	dbj|AK099562.1| Oryza sativa (japonica cultivar-group) cDNA clon...	131	3e-27
4	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	131	3e-27
5	gb|AY108199.1| Zea mays PCO076094 mRNA sequence	101	3e-18
6	gb|AC121780.3| Mus musculus BAC clone RP23-360J14 from chromosom...	44	0.56
7	gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complet...	44	0.56
8	ref|XM_629230.1| Dictyostelium discoideum hypothetical protein (...	42	2.2
9	ref|NM_002657.2| Homo sapiens pleiomorphic adenoma gene-like 2 (...	42	2.2
10	gb|AC113095.14| Mus musculus chromosome 9, clone RP23-311A1, com...	42	2.2
11	gb|AC092098.3| Homo sapiens BAC clone RP11-533K11 from 7, comple...	42	2.2
12	emb|AL121897.32|HSA392M18 Human DNA sequence from clone RP11-392...	42	2.2
13	gb|AC162170.5| Mus musculus chromosome 1, clone RP23-240G10, com...	42	2.2
14	gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome	42	2.2
15	gb|AC098848.7| Homo sapiens chromosome 18, clone RP11-839G9, com...	42	2.2
16	dbj|D83784.1| Homo sapiens mRNA for KIAA0198 gene, partial cds	42	2.2
17	gb|AE010256.1| Pyrococcus furiosus DSM 3638, section 131 of 173 ...	42	2.2
18	gb|AF006005.1|AF006005 Homo sapiens zinc finger protein PLAGL2 (...	42	2.2
19	dbj|AK026951.1| Homo sapiens cDNA: FLJ23298 fis, clone HEP10717	42	2.2
20	gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromos...	42	2.2
21	emb|AL772348.2| Mouse DNA sequence from clone RP23-316A19 on chr...	42	2.2
22	gb|AC125407.4| Mus musculus BAC clone RP23-94F17 from chromosome...	40	8.7
23	ref|NM_017221.1| Rattus norvegicus sonic hedgehog homolog (Droso...	40	8.7
24	gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, comp...	40	8.7
25	gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph...	40	8.7
26	ref|NM_009170.2| Mus musculus sonic hedgehog (Shh), mRNA	40	8.7
27	gb|BC063087.1| Mus musculus sonic hedgehog, mRNA (cDNA clone MGC...	40	8.7
28	gb|AC134530.3| Mus musculus BAC clone RP24-507K16 from chromosom...	40	8.7
29	gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete se...	40	8.7
30	gb|AC102570.8| Mus musculus, clone RP23-228G18, complete sequence	40	8.7
31	emb|AL591643.4| Human DNA sequence from clone CTD-2076M15 on chr...	40	8.7
32	emb|AL356958.11| Human DNA sequence from clone RP1-51P18 on chro...	40	8.7
33	gb|AC105411.1| Homo sapiens chromosome 16 clone RP11-354A20, com...	40	8.7
34	dbj|AK077688.1| Mus musculus 8 days embryo whole body cDNA, RIKE...	40	8.7
35	dbj|AK052447.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful...	40	8.7
36	gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, com...	40	8.7
37	gb|AC112688.10| Mus musculus chromosome 5, clone RP23-258C13, co...	40	8.7
38	dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome	40	8.7
39	dbj|AB185174.1| Meriones unguiculatus Shh mRNA for sonic hedgeho...	40	8.7
40	gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, comple...	40	8.7
41	emb|CT573507.2| Medicago truncatula chromosome 5 clone mth2-72p1...	40	8.7
42	gb|AC116797.11| Mus musculus chromosome 13, clone RP24-327I15, c...	40	8.7
43	dbj|AP000757.4| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	8.7
44	emb|AL078589.8|HS1126I14 Human DNA sequence from clone RP5-1126I...	40	8.7
45	emb|AL671873.15| Mouse DNA sequence from clone RP23-382D17 on ch...	40	8.7
46	emb|X76290.1|MMSHH M.musculus (C57BL/6J) Shh mRNA	40	8.7
47	emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chr...	40	8.7
48	gb|L27340.1|RATVHH1X Rat (vhh-1) mRNA, complete cds	40	8.7
49	dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:R...	40	8.7

---

>gb|AC137752.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0041C22, complete sequence
          Length = 161172

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Plus

                                                                         
Query: 503   agtgcccagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcat 562
             |||||||| ||||||||||| ||||||||| |||| |||   |  |||||| | ||||||
Sbjct: 94639 agtgcccaactgtgcttctcaatgagattagaagcttcgcatgagcgcagccttgcgcat 94698

                                                                         
Query: 563   aactccaaggtctttgggtcgaagcccatcatgtaactcttcaggtcatgaggatcaaca 622
             ||||||||||||||||| || |||||||||||||||||||||| ||||||  ||||||||
Sbjct: 94699 aactccaaggtctttggatcaaagcccatcatgtaactcttcaagtcatgcagatcaaca 94758

                           
Query: 623   acagaacttggttt 636
             |||||||| |||||
Sbjct: 94759 acagaactcggttt 94772



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Plus

                                                                         
Query: 343   ttttcagctgtcctgcaacttgtatatctcatcaacatagtcttcggtatcccaaaggaa 402
             ||||||||| || ||||||||||| ||||| |||||||| || ||   ||||||||| ||
Sbjct: 94476 ttttcagctatcatgcaacttgtaaatctcgtcaacataatcctcaacatcccaaagaaa 94535

                                                                         
Query: 403   ggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctggatcaagtatcac 462
             |||||| ||||||||||||||||||| ||  || ||||||||||  ||||| ||||||||
Sbjct: 94536 ggaaccaaatgcaatggcttcaagcaacaatctctttagggatgacggatcgagtatcac 94595

                   
Query: 463   cgcctc 468
              |||||
Sbjct: 94596 tgcctc 94601

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Plus

                                                                            
Query: 503      agtgcccagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcat 562
                |||||||| ||||||||||| ||||||||| |||| |||   |  |||||| | ||||||
Sbjct: 14871572 agtgcccaactgtgcttctcaatgagattagaagcttcgcatgagcgcagccttgcgcat 14871631

                                                                            
Query: 563      aactccaaggtctttgggtcgaagcccatcatgtaactcttcaggtcatgaggatcaaca 622
                ||||||||||||||||| || |||||||||||||||||||||| ||||||  ||||||||
Sbjct: 14871632 aactccaaggtctttggatcaaagcccatcatgtaactcttcaagtcatgcagatcaaca 14871691

                              
Query: 623      acagaacttggttt 636
                |||||||| |||||
Sbjct: 14871692 acagaactcggttt 14871705



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Plus

                                                                            
Query: 343      ttttcagctgtcctgcaacttgtatatctcatcaacatagtcttcggtatcccaaaggaa 402
                ||||||||| || ||||||||||| ||||| |||||||| || ||   ||||||||| ||
Sbjct: 14871409 ttttcagctatcatgcaacttgtaaatctcgtcaacataatcctcaacatcccaaagaaa 14871468

                                                                            
Query: 403      ggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctggatcaagtatcac 462
                |||||| ||||||||||||||||||| ||  || ||||||||||  ||||| ||||||||
Sbjct: 14871469 ggaaccaaatgcaatggcttcaagcaacaatctctttagggatgacggatcgagtatcac 14871528

                      
Query: 463      cgcctc 468
                 |||||
Sbjct: 14871529 tgcctc 14871534

---

>dbj|AK099562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034L13, full
            insert sequence
          Length = 1255

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Minus

                                                                        
Query: 503  agtgcccagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcat 562
            |||||||| ||||||||||| ||||||||| |||| |||   |  |||||| | ||||||
Sbjct: 1008 agtgcccaactgtgcttctcaatgagattagaagcttcgcatgagcgcagccttgcgcat 949

                                                                        
Query: 563  aactccaaggtctttgggtcgaagcccatcatgtaactcttcaggtcatgaggatcaaca 622
            ||||||||||||||||| || |||||||||||||||||||||| ||||||  ||||||||
Sbjct: 948  aactccaaggtctttggatcaaagcccatcatgtaactcttcaagtcatgcagatcaaca 889

                          
Query: 623  acagaacttggttt 636
            |||||||| |||||
Sbjct: 888  acagaactcggttt 875



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Minus

                                                                        
Query: 343  ttttcagctgtcctgcaacttgtatatctcatcaacatagtcttcggtatcccaaaggaa 402
            ||||||||| || ||||||||||| ||||| |||||||| || ||   ||||||||| ||
Sbjct: 1171 ttttcagctatcatgcaacttgtaaatctcgtcaacataatcctcaacatcccaaagaaa 1112

                                                                        
Query: 403  ggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctggatcaagtatcac 462
            |||||| ||||||||||||||||||| ||  || ||||||||||  ||||| ||||||||
Sbjct: 1111 ggaaccaaatgcaatggcttcaagcaacaatctctttagggatgacggatcgagtatcac 1052

                  
Query: 463  cgcctc 468
             |||||
Sbjct: 1051 tgcctc 1046

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  131 bits (66), Expect = 3e-27
 Identities = 117/134 (87%)
 Strand = Plus / Plus

                                                                            
Query: 503      agtgcccagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcat 562
                |||||||| ||||||||||| ||||||||| |||| |||   |  |||||| | ||||||
Sbjct: 14951540 agtgcccaactgtgcttctcaatgagattagaagcttcgcatgagcgcagccttgcgcat 14951599

                                                                            
Query: 563      aactccaaggtctttgggtcgaagcccatcatgtaactcttcaggtcatgaggatcaaca 622
                ||||||||||||||||| || |||||||||||||||||||||| ||||||  ||||||||
Sbjct: 14951600 aactccaaggtctttggatcaaagcccatcatgtaactcttcaagtcatgcagatcaaca 14951659

                              
Query: 623      acagaacttggttt 636
                |||||||| |||||
Sbjct: 14951660 acagaactcggttt 14951673



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 107/126 (84%)
 Strand = Plus / Plus

                                                                            
Query: 343      ttttcagctgtcctgcaacttgtatatctcatcaacatagtcttcggtatcccaaaggaa 402
                ||||||||| || ||||||||||| ||||| |||||||| || ||   ||||||||| ||
Sbjct: 14951377 ttttcagctatcatgcaacttgtaaatctcgtcaacataatcctcaacatcccaaagaaa 14951436

                                                                            
Query: 403      ggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctggatcaagtatcac 462
                |||||| ||||||||||||||||||| ||  || ||||||||||  ||||| ||||||||
Sbjct: 14951437 ggaaccaaatgcaatggcttcaagcaacaatctctttagggatgacggatcgagtatcac 14951496

                      
Query: 463      cgcctc 468
                 |||||
Sbjct: 14951497 tgcctc 14951502

---

>gb|AY108199.1| Zea mays PCO076094 mRNA sequence
          Length = 861

 Score =  101 bits (51), Expect = 3e-18
 Identities = 170/209 (81%), Gaps = 3/209 (1%)
 Strand = Plus / Minus

                                                                       
Query: 392 tcccaaaggaaggaaccgaatgcaatggcttcaagcagcagcctttttagggatgctgga 451
           ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||  |||
Sbjct: 580 tcccagaggaaggaaccgaatgcgatggcttcaagcagtagtcttttcagggatgaagga 521

                                                                       
Query: 452 tcaagtatcaccgcctcgtcaatctccgtggag---cccatcttttctccaaagagtgcc 508
           |||||||| ||||| || ||| |||||  ||||    |||| |   | ||||| || |||
Sbjct: 520 tcaagtataaccgcttcatcattctcctgggagagttccatgtcgcccccaaaaagagcc 461

                                                                       
Query: 509 cagctgtgcttctcgatgagattacaagcctcgttagtccgcagcttcgcgcataactcc 568
           ||||||||| |||||||||||||| |||| ||    |  |||||||||||||| | || |
Sbjct: 460 cagctgtgcctctcgatgagattagaagcttcagatgagcgcagcttcgcgcaaagctgc 401

                                        
Query: 569 aaggtctttgggtcgaagcccatcatgta 597
           ||||||||||| ||||| ||||| |||||
Sbjct: 400 aaggtctttggatcgaatcccattatgta 372

---

>gb|AC121780.3| Mus musculus BAC clone RP23-360J14 from chromosome 5, complete sequence
          Length = 217140

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 261   tacaaggtctcaggaatcttct 282
             ||||||||||||||||||||||
Sbjct: 30741 tacaaggtctcaggaatcttct 30720

---

>gb|AC122012.3| Mus musculus BAC clone RP24-353N4 from 5, complete sequence
          Length = 188867

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 261    tacaaggtctcaggaatcttct 282
              ||||||||||||||||||||||
Sbjct: 178064 tacaaggtctcaggaatcttct 178043

---

>ref|XM_629230.1| Dictyostelium discoideum hypothetical protein (DDB0191837), partial
           mRNA
          Length = 2814

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 368 atctcatcaacatagtcttcggtat 392
           ||||||||||||||||||| |||||
Sbjct: 408 atctcatcaacatagtctttggtat 432

---

>ref|NM_002657.2| Homo sapiens pleiomorphic adenoma gene-like 2 (PLAGL2), mRNA
          Length = 5640

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 278  cttctgcaaactcttcttcca 298
            |||||||||||||||||||||
Sbjct: 2895 cttctgcaaactcttcttcca 2875

---

>gb|AC113095.14| Mus musculus chromosome 9, clone RP23-311A1, complete sequence
          Length = 205429

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 186    aggctacatattttagcacct 206
              |||||||||||||||||||||
Sbjct: 128505 aggctacatattttagcacct 128485

---

>gb|AC092098.3| Homo sapiens BAC clone RP11-533K11 from 7, complete sequence
          Length = 198786

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 244   taatttcctaaaatatatacaaggt 268
             ||||||||| |||||||||||||||
Sbjct: 46392 taatttcctgaaatatatacaaggt 46416

---

>emb|AL121897.32|HSA392M18 Human DNA sequence from clone RP11-392M18 on chromosome 20 Contains
            the TSPYL3 gene for TSPY-like 3 (pseudogene), the PLAGL2
            gene for pleiomorphic adenoma-like protein 2, the POFUT1
            gene for protein O-fucosyltransferase 1, the KIF3B gene
            for kinesin family member 3B and three CpG islands,
            complete sequence
          Length = 145414

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 278  cttctgcaaactcttcttcca 298
            |||||||||||||||||||||
Sbjct: 8216 cttctgcaaactcttcttcca 8236

---

>gb|AC162170.5| Mus musculus chromosome 1, clone RP23-240G10, complete sequence
          Length = 159806

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 316    actgctcaggtatcttctgga 336
              |||||||||||||||||||||
Sbjct: 105900 actgctcaggtatcttctgga 105880

---

>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 244    taatttcctaaaatatatacaaggtctca 272
              ||||| ||||||||||| |||||||||||
Sbjct: 184783 taattacctaaaatataaacaaggtctca 184811

---

>gb|AC098848.7| Homo sapiens chromosome 18, clone RP11-839G9, complete sequence
          Length = 189315

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 346  tcagctgtcctgcaacttgtatatc 370
            ||||||||||||| |||||||||||
Sbjct: 4648 tcagctgtcctgctacttgtatatc 4624

---

>dbj|D83784.1| Homo sapiens mRNA for KIAA0198 gene, partial cds
          Length = 5638

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 278  cttctgcaaactcttcttcca 298
            |||||||||||||||||||||
Sbjct: 2893 cttctgcaaactcttcttcca 2873

---

>gb|AE010256.1| Pyrococcus furiosus DSM 3638, section 131 of 173 of the complete
            genome
          Length = 8250

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 253  aaaatatatacaaggtctcaggaat 277
            ||||||||||||||||||| |||||
Sbjct: 1808 aaaatatatacaaggtctcgggaat 1832

---

>gb|AF006005.1|AF006005 Homo sapiens zinc finger protein PLAGL2 (PLAGL2) mRNA, complete cds
          Length = 4051

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 278  cttctgcaaactcttcttcca 298
            |||||||||||||||||||||
Sbjct: 2895 cttctgcaaactcttcttcca 2875

---

>dbj|AK026951.1| Homo sapiens cDNA: FLJ23298 fis, clone HEP10717
          Length = 3346

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 278 cttctgcaaactcttcttcca 298
           |||||||||||||||||||||
Sbjct: 584 cttctgcaaactcttcttcca 564

---

>gb|AC147597.2| Gallus gallus BAC clone CH261-100D18 from chromosome unknown, complete
             sequence
          Length = 168372

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     acactttgtactaaacaaaat 21
             |||||||||||||||||||||
Sbjct: 17710 acactttgtactaaacaaaat 17690

---

>emb|AL772348.2| Mouse DNA sequence from clone RP23-316A19 on chromosome X, complete
              sequence
          Length = 173365

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 245    aatttcctaaaatatatacaa 265
              |||||||||||||||||||||
Sbjct: 126601 aatttcctaaaatatatacaa 126621

---

>gb|AC125407.4| Mus musculus BAC clone RP23-94F17 from chromosome 5, complete sequence
          Length = 233082

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 504   gtgcccagctgtgcttctcgatga 527
             ||||||||||||||| ||||||||
Sbjct: 19021 gtgcccagctgtgctcctcgatga 19044

---

>ref|NM_017221.1| Rattus norvegicus sonic hedgehog homolog (Drosophila) (Shh), mRNA
          Length = 1715

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  gtgcccagctgtgcttctcgatga 527
            ||||||||||||||| ||||||||
Sbjct: 1392 gtgcccagctgtgctcctcgatga 1369

---

>gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, complete sequence
          Length = 199094

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   aatttcctaaaatatataca 264
             ||||||||||||||||||||
Sbjct: 67275 aatttcctaaaatatataca 67294

---

>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     tgcctgcaaggtttttatat 176
               ||||||||||||||||||||
Sbjct: 2728896 tgcctgcaaggtttttatat 2728915

---

>ref|NM_009170.2| Mus musculus sonic hedgehog (Shh), mRNA
          Length = 2716

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  gtgcccagctgtgcttctcgatga 527
            ||||||||||||||| ||||||||
Sbjct: 1403 gtgcccagctgtgctcctcgatga 1380

---

>gb|BC063087.1| Mus musculus sonic hedgehog, mRNA (cDNA clone MGC:69975
            IMAGE:6516263), complete cds
          Length = 2716

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  gtgcccagctgtgcttctcgatga 527
            ||||||||||||||| ||||||||
Sbjct: 1403 gtgcccagctgtgctcctcgatga 1380

---

>gb|AC134530.3| Mus musculus BAC clone RP24-507K16 from chromosome 5, complete sequence
          Length = 215112

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 504   gtgcccagctgtgcttctcgatga 527
             ||||||||||||||| ||||||||
Sbjct: 22089 gtgcccagctgtgctcctcgatga 22066

---

>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
          Length = 106540

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 232   aaaagaagaaggtaatttcctaaaatat 259
             |||||||||||||| ||| |||||||||
Sbjct: 30696 aaaagaagaaggtatttttctaaaatat 30723

---

>gb|AC102570.8| Mus musculus, clone RP23-228G18, complete sequence
          Length = 228644

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   aatttcctaaaatatataca 264
             ||||||||||||||||||||
Sbjct: 73400 aatttcctaaaatatataca 73381

---

>emb|AL591643.4| Human DNA sequence from clone CTD-2076M15 on chromosome Xq23-24,
             complete sequence
          Length = 61143

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   aaaaaaggctacatatttta 200
             ||||||||||||||||||||
Sbjct: 52048 aaaaaaggctacatatttta 52067

---

>emb|AL356958.11| Human DNA sequence from clone RP1-51P18 on chromosome 6 Contains part
             of the gene for a novel protein (KIAA1900), complete
             sequence
          Length = 26854

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   tatatacaaggtctcaggaa 276
             ||||||||||||||||||||
Sbjct: 19145 tatatacaaggtctcaggaa 19126

---

>gb|AC105411.1| Homo sapiens chromosome 16 clone RP11-354A20, complete sequence
          Length = 172797

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    gcctttttagggatgctgga 451
              ||||||||||||||||||||
Sbjct: 138461 gcctttttagggatgctgga 138480

---

>dbj|AK077688.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:5730522J07 product:sonic hedgehog
            homolog, (Drosophila), full insert sequence
          Length = 2668

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  gtgcccagctgtgcttctcgatga 527
            ||||||||||||||| ||||||||
Sbjct: 1417 gtgcccagctgtgctcctcgatga 1394

---

>dbj|AK052447.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430024L03 product:SONIC HEDGEHOG PROTEIN
            PRECURSOR (SHH) (HHG-1) homolog [Mus musculus], full
            insert sequence
          Length = 2692

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  gtgcccagctgtgcttctcgatga 527
            ||||||||||||||| ||||||||
Sbjct: 1417 gtgcccagctgtgctcctcgatga 1394

---

>gb|AC108483.3| Homo sapiens chromosome 16 clone RP11-170P24, complete sequence
          Length = 163976

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   gcctttttagggatgctgga 451
             ||||||||||||||||||||
Sbjct: 11954 gcctttttagggatgctgga 11973

---

>gb|AC112688.10| Mus musculus chromosome 5, clone RP23-258C13, complete sequence
          Length = 181175

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    aatttcctaaaatatataca 264
              ||||||||||||||||||||
Sbjct: 119311 aatttcctaaaatatataca 119292

---

>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     tttacatgcgcagaaaagaa 238
               ||||||||||||||||||||
Sbjct: 1315836 tttacatgcgcagaaaagaa 1315855

---

>dbj|AB185174.1| Meriones unguiculatus Shh mRNA for sonic hedgehog, complete cds
          Length = 1679

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  gtgcccagctgtgcttctcgatga 527
            ||||||||||||||| ||||||||
Sbjct: 1420 gtgcccagctgtgctcctcgatga 1397

---

>gb|AC154341.2| Mus musculus BAC clone RP23-240C2 from 16, complete sequence
          Length = 163871

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gtaatttcctaaaatatata 262
             ||||||||||||||||||||
Sbjct: 65186 gtaatttcctaaaatatata 65167

---

>emb|CT573507.2| Medicago truncatula chromosome 5 clone mth2-72p17, COMPLETE SEQUENCE
          Length = 109575

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   aatatatacaaggtctcagg 274
             ||||||||||||||||||||
Sbjct: 96379 aatatatacaaggtctcagg 96360

---

>gb|AC116797.11| Mus musculus chromosome 13, clone RP24-327I15, complete sequence
          Length = 145747

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   aatttcctaaaatatataca 264
             ||||||||||||||||||||
Sbjct: 89338 aatttcctaaaatatataca 89357

---

>dbj|AP000757.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-728F11, complete
             sequences
          Length = 184926

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   gaatcttctgcaaactcttc 293
             ||||||||||||||||||||
Sbjct: 93031 gaatcttctgcaaactcttc 93012

---

>emb|AL078589.8|HS1126I14 Human DNA sequence from clone RP5-1126I14 on chromosome 6q16.1-16.3,
             complete sequence
          Length = 19544

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   tatatacaaggtctcaggaa 276
             ||||||||||||||||||||
Sbjct: 11835 tatatacaaggtctcaggaa 11816

---

>emb|AL671873.15| Mouse DNA sequence from clone RP23-382D17 on chromosome X, complete
             sequence
          Length = 213223

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 479   gtggagcccatcttttctccaaag 502
             ||||| ||||||||||||||||||
Sbjct: 20751 gtggaacccatcttttctccaaag 20774

---

>emb|X76290.1|MMSHH M.musculus (C57BL/6J) Shh mRNA
          Length = 1314

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  gtgcccagctgtgcttctcgatga 527
            ||||||||||||||| ||||||||
Sbjct: 1078 gtgcccagctgtgctcctcgatga 1055

---

>emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chromosome 4, complete
             sequence
          Length = 203558

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   atttcctaaaatatatacaa 265
             ||||||||||||||||||||
Sbjct: 34563 atttcctaaaatatatacaa 34582

---

>gb|L27340.1|RATVHH1X Rat (vhh-1) mRNA, complete cds
          Length = 1715

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 504  gtgcccagctgtgcttctcgatga 527
            ||||||||||||||| ||||||||
Sbjct: 1392 gtgcccagctgtgctcctcgatga 1369

---

>dbj|AP003775.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-206H19, complete
             sequences
          Length = 179680

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 486   ccatcttttctccaaagagt 505
             ||||||||||||||||||||
Sbjct: 70996 ccatcttttctccaaagagt 70977


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,050,625
Number of Sequences: 3902068
Number of extensions: 6050625
Number of successful extensions: 105275
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105090
Number of HSP's gapped (non-prelim): 181
length of query: 638
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 615
effective length of database: 17,143,297,704
effective search space: 10543128087960
effective search space used: 10543128087960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---