ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal21b24 |
|---|---|
| Clone Library Name | barley_pub |
>FAF1_HUMAN (Q9UNN5) FAS-associated factor 1 (Protein FAF1) (hFAF1)| Length = 650 Score = 52.0 bits (123), Expect = 8e-07 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Frame = -1 Query: 419 ALGAEP--EKGPDVTRVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLKAEKYSLVSN 246 AL EP E V+++ IR P+GE ERRF +S + ++D+V S ++Y L+S Sbjct: 560 ALPPEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG-FPWDEYKLLST 618 Query: 245 FPRVTYGPEKNSQTLVEAGLHPQASLFIEIEQ 150 FPR +++L+E L PQ +LF+E ++ Sbjct: 619 FPRRDVTQLDPNKSLLEVKLFPQETLFLEAKE 650
>FAF1_MOUSE (P54731) FAS-associated factor 1 (Protein FAF1)| Length = 649 Score = 50.1 bits (118), Expect = 3e-06 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%) Frame = -1 Query: 419 ALGAEP--EKGPDVTRVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLKAEKYSLVSN 246 AL EP E V+++ IR P+GE ERRF +S + ++D+V S +++ L+S Sbjct: 559 ALPPEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG-FPWDEFKLLST 617 Query: 245 FPRVTYGPEKNSQTLVEAGLHPQASLFIEIEQ 150 FPR +++L+E L PQ +LF++ ++ Sbjct: 618 FPRRDVTQLDPNKSLLEVNLFPQETLFLQAKE 649
>FAF1_RAT (Q924K2) FAS-associated factor 1 (Protein FAF1)| Length = 649 Score = 48.9 bits (115), Expect = 7e-06 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%) Frame = -1 Query: 419 ALGAEPEK--GPDVTRVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLKAEKYSLVSN 246 AL EPE+ V+++ IR P+GE ERRF +S + ++D+V S +++ L+S Sbjct: 559 ALPPEPEEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG-FPWDEFKLLST 617 Query: 245 FPRVTYGPEKNSQTLVEAGLHPQASLFI 162 FPR +++L+E L PQ +LF+ Sbjct: 618 FPRRDVTQLDPNKSLLEVNLFPQETLFL 645
>UBX2_SCHPO (O14048) UBX domain-containing protein 2| Length = 427 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/81 (35%), Positives = 41/81 (50%) Frame = -1 Query: 407 EPEKGPDVTRVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLKAEKYSLVSNFPRVTY 228 EP GP+VTR+ IR P G R RRF + ++ +Y YV + A+K F R + Sbjct: 346 EPSPGPNVTRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGV-AEGADKQPFSLTFQRKSL 404 Query: 227 GPEKNSQTLVEAGLHPQASLF 165 +S T+ EAG+ A F Sbjct: 405 WTSLDS-TIKEAGIQNTALQF 424
>UBXD7_PONPY (Q5REY7) UBX domain-containing protein 7| Length = 489 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/74 (29%), Positives = 42/74 (56%) Frame = -1 Query: 380 RVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLKAEKYSLVSNFPRVTYGPEKNSQTL 201 ++++R+P G+R++ A + ++ +V S E++ L++NFPR TL Sbjct: 414 QLMLRYPDGKREQITLPEQAKLLALVKHVQSKG-YPNERFELLTNFPRRKLSHLDYDITL 472 Query: 200 VEAGLHPQASLFIE 159 EAGL PQ ++F++ Sbjct: 473 QEAGLCPQETVFVQ 486
>UBXD7_HUMAN (O94888) UBX domain-containing protein 7| Length = 489 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/74 (29%), Positives = 42/74 (56%) Frame = -1 Query: 380 RVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLKAEKYSLVSNFPRVTYGPEKNSQTL 201 ++++R+P G+R++ A + ++ +V S E++ L++NFPR TL Sbjct: 414 QLMLRYPDGKREQITLPEQAKLLALVKHVQSKG-YPNERFELLTNFPRRKLSHLDYDITL 472 Query: 200 VEAGLHPQASLFIE 159 EAGL PQ ++F++ Sbjct: 473 QEAGLCPQETVFVQ 486
>UBXD7_MOUSE (Q6P5G6) UBX domain-containing protein 7| Length = 467 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/74 (29%), Positives = 42/74 (56%) Frame = -1 Query: 380 RVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLKAEKYSLVSNFPRVTYGPEKNSQTL 201 ++++R+P G+R++ A + ++ +V S E++ L++NFPR TL Sbjct: 392 QLMLRYPDGKREQITLPEQAKLLALVKHVQSKG-YPNERFELLTNFPRRKLSHLDYDITL 450 Query: 200 VEAGLHPQASLFIE 159 EAGL PQ ++F++ Sbjct: 451 QEAGLCPQETVFVQ 464
>UBX3_YEAST (Q12229) UBX domain-containing protein 3| Length = 455 Score = 33.5 bits (75), Expect = 0.30 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 16/102 (15%) Frame = -1 Query: 416 LGAEPEKGPDVTRVLIRFPTGERKERRFHSSATITSIYDYV------------DSLDCLK 273 L EP D ++V IR G+R R+F +S IY +V D+L + Sbjct: 350 LKPEPSSDKDASKVAIRLENGQRLVRKFDASLPTEEIYAFVELQLHDMLNSENDTLPVYQ 409 Query: 272 AEKYSLVSNFPRVTYGPEKNSQTLVE----AGLHPQASLFIE 159 Y +F +T P + + +G++P ++ +E Sbjct: 410 PANYQHQYSFKLITPVPRRELDLSTKISDVSGIYPSGNIVME 451
>UBX7_YEAST (P38349) UBX domain-containing protein 7| Length = 436 Score = 32.7 bits (73), Expect = 0.52 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Frame = -1 Query: 371 IRFPTGERKERRFHSSATITSIYDYVD----SLDCLKAEKYSLVSNFPRVTYGPEKNSQT 204 IR G+ + F+SS T+ + +VD DC YS PRVT+ +T Sbjct: 221 IRMTDGKTLKHEFNSSETLNDVRKWVDVNRTDGDC----PYSFHRGIPRVTFKDSDELKT 276 Query: 203 LVEAGLHPQASLFIE 159 L L P+++L ++ Sbjct: 277 LETLELTPRSALLLK 291
>UBXD6_HUMAN (O00124) UBX domain-containing protein 6 (Rep-8 protein)| (Reproduction 8 protein) Length = 270 Score = 32.0 bits (71), Expect = 0.88 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = -1 Query: 416 LGAEPEK-GPDVTRVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLKAEKYSLVSNFP 240 L EP + +V V +R P+G RRF S + ++D++ + YSL ++FP Sbjct: 180 LPEEPSQTAEEVVTVALRCPSGNVLRRRFLKSYSSQVLFDWMTRIG-YHISLYSLSTSFP 238 Query: 239 RVTYGPEKNSQTLVEAGLHPQASLFIE 159 R E Q+L + G+ L +E Sbjct: 239 RRPLAVE-GGQSLEDIGITVDTVLILE 264
>U33K_MOUSE (Q922Y1) UBA/UBX 33.3 kDa protein| Length = 297 Score = 30.0 bits (66), Expect = 3.3 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Frame = -1 Query: 389 DVTRVLIRFPTGERKERRFHSSATITSIYDYVD----SLDCLKAEKYSLVSNFPRVTYGP 222 D R+ +R P G + F + + ++ YV+ + L+S FPR + Sbjct: 212 DQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEEPGQDQDPVQLLSGFPRRAFSE 271 Query: 221 EKNSQTLVEAGLHPQASLFI 162 + L E GL P A L + Sbjct: 272 ADMERPLQELGLVPSAVLIV 291
>U33K_HUMAN (Q04323) UBA/UBX 33.3 kDa protein| Length = 297 Score = 29.3 bits (64), Expect = 5.7 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%) Frame = -1 Query: 389 DVTRVLIRFPTGERKERRFHSSATITSIYDYVDSLDCLK----AEKYSLVSNFPRVTYGP 222 D R+ +R P G + F + + ++ YV+ + + L+S FPR + Sbjct: 212 DQCRIQVRLPDGTSLTQTFRAREQLAAVRLYVELHRGEELGGGQDPVQLLSGFPRRAFSE 271 Query: 221 EKNSQTLVEAGLHPQASLFI 162 + L E GL P A L + Sbjct: 272 ADMERPLQELGLVPSAVLIV 291
>UBXD4_MOUSE (Q99KJ0) UBX domain-containing protein 4| Length = 258 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -1 Query: 386 VTRVLIRFPTGERKERRFHSSATITSIYDYVDSLD-CLKAEKYSLVSNFPRVTYGPEKNS 210 +TR+ I GER +RF+ S ++ I D+++ ++ ++L + P + + E + Sbjct: 174 ITRIQIWLANGERTVQRFNVSHRVSHIKDFIEKYQGSQRSPPFALATALPFLRFLDE--T 231 Query: 209 QTLVEAGL 186 TL EA L Sbjct: 232 LTLEEADL 239
>VPS13_YEAST (Q07878) Vacuolar protein sorting-associated protein VPS13| (Suppression of the onset of impotence protein 1) Length = 3144 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +2 Query: 11 PAFRQKSSLSILPYSWKFPT 70 P F + S SI+PY+W FPT Sbjct: 2463 PIFYRIPSKSIMPYAWDFPT 2482
>ALBUA_XENLA (P08759) Serum albumin A precursor (68 kDa serum albumin)| Length = 606 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = +3 Query: 342 FFALSSWKSYKNPSNVRPFLRLSAKSHCLLLTSPCKSGFLFSCFLD 479 F +S W+S + P FL SAK + LL C S C+ D Sbjct: 349 FLEISPWQSQETPELSEQFLLQSAKEYESLLNKCCFSDNPPECYKD 394 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,030,580 Number of Sequences: 219361 Number of extensions: 1490812 Number of successful extensions: 4208 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4205 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
