| Clone Name | rbaal20m22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467248.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Minus Query: 194 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 253 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 864 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 805 Query: 254 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 313 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 804 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 745 Query: 314 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccg 373 | ||||||||||||||||||||||||||||| |||||||||||||||| ||| || || Sbjct: 744 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgagtcctcggactcgt 685 Query: 374 accgcgcgtccttgagcgccgctctcttcttcttctt 410 |||||||||||||||||||||| |||||||||||||| Sbjct: 684 accgcgcgtccttgagcgccgccctcttcttcttctt 648 Score = 157 bits (79), Expect = 5e-35 Identities = 118/131 (90%) Strand = Plus / Minus Query: 436 ttcttcctcggccggtggccgccggacgtgcctacaattttacatccgagggagcagaag 495 |||||||| || |||| || |||||||| || ||||| || |||||||||||||||||| Sbjct: 601 ttcttccttgggcggtatccaccggacgtacccacaatcttgcatccgagggagcagaag 542 Query: 496 cggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttggtgactcccttgccc 555 ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 541 cggaaggagtcgaggaggctgcgctcgcagacctcgcaggtgttggtgacgcccttgccg 482 Query: 556 ggcctcggctg 566 ||||||||||| Sbjct: 481 ggcctcggctg 471
>ref|XM_506899.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1148_D05.19 mRNA Length = 1322 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Minus Query: 194 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 253 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 869 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 810 Query: 254 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 313 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 809 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 750 Query: 314 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccg 373 | ||||||||||||||||||||||||||||| |||||||||||||||| ||| || || Sbjct: 749 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgagtcctcggactcgt 690 Query: 374 accgcgcgtccttgagcgccgctctcttcttcttctt 410 |||||||||||||||||||||| |||||||||||||| Sbjct: 689 accgcgcgtccttgagcgccgccctcttcttcttctt 653 Score = 157 bits (79), Expect = 5e-35 Identities = 118/131 (90%) Strand = Plus / Minus Query: 436 ttcttcctcggccggtggccgccggacgtgcctacaattttacatccgagggagcagaag 495 |||||||| || |||| || |||||||| || ||||| || |||||||||||||||||| Sbjct: 606 ttcttccttgggcggtatccaccggacgtacccacaatcttgcatccgagggagcagaag 547 Query: 496 cggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttggtgactcccttgccc 555 ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 546 cggaaggagtcgaggaggctgcgctcgcagacctcgcaggtgttggtgacgcccttgccg 487 Query: 556 ggcctcggctg 566 ||||||||||| Sbjct: 486 ggcctcggctg 476
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Plus Query: 194 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 253 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 28454025 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 28454084 Query: 254 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 313 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 28454085 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 28454144 Query: 314 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccg 373 | ||||||||||||||||||||||||||||| |||||||||||||||| ||| || || Sbjct: 28454145 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgagtcctcggactcgt 28454204 Query: 374 accgcgcgtccttgagcgccgctctcttcttcttctt 410 |||||||||||||||||||||| |||||||||||||| Sbjct: 28454205 accgcgcgtccttgagcgccgccctcttcttcttctt 28454241 Score = 145 bits (73), Expect = 2e-31 Identities = 85/89 (95%) Strand = Plus / Plus Query: 478 catccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtg 537 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 28454420 catccgagggagcagaagcggaaggagtcgaggaggctgcgctcgcagacctcgcaggtg 28454479 Query: 538 ttggtgactcccttgcccggcctcggctg 566 |||||||| |||||||| ||||||||||| Sbjct: 28454480 ttggtgacgcccttgccgggcctcggctg 28454508 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaa 500 |||||||||||||||||||| Sbjct: 5204110 ccgagggagcagaagcggaa 5204129
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Plus Query: 194 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 253 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 78146 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 78205 Query: 254 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 313 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 78206 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 78265 Query: 314 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccg 373 | ||||||||||||||||||||||||||||| |||||||||||||||| ||| || || Sbjct: 78266 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgagtcctcggactcgt 78325 Query: 374 accgcgcgtccttgagcgccgctctcttcttcttctt 410 |||||||||||||||||||||| |||||||||||||| Sbjct: 78326 accgcgcgtccttgagcgccgccctcttcttcttctt 78362 Score = 145 bits (73), Expect = 2e-31 Identities = 85/89 (95%) Strand = Plus / Plus Query: 478 catccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtg 537 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 78541 catccgagggagcagaagcggaaggagtcgaggaggctgcgctcgcagacctcgcaggtg 78600 Query: 538 ttggtgactcccttgcccggcctcggctg 566 |||||||| |||||||| ||||||||||| Sbjct: 78601 ttggtgacgcccttgccgggcctcggctg 78629
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Plus Query: 194 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 253 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 22866 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 22925 Query: 254 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 313 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 22926 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 22985 Query: 314 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccg 373 | ||||||||||||||||||||||||||||| |||||||||||||||| ||| || || Sbjct: 22986 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgagtcctcggactcgt 23045 Query: 374 accgcgcgtccttgagcgccgctctcttcttcttctt 410 |||||||||||||||||||||| |||||||||||||| Sbjct: 23046 accgcgcgtccttgagcgccgccctcttcttcttctt 23082 Score = 145 bits (73), Expect = 2e-31 Identities = 85/89 (95%) Strand = Plus / Plus Query: 478 catccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtg 537 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 23261 catccgagggagcagaagcggaaggagtcgaggaggctgcgctcgcagacctcgcaggtg 23320 Query: 538 ttggtgactcccttgcccggcctcggctg 566 |||||||| |||||||| ||||||||||| Sbjct: 23321 ttggtgacgcccttgccgggcctcggctg 23349
>dbj|AK104818.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A01, full insert sequence Length = 1305 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Minus Query: 194 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 253 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 864 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 805 Query: 254 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 313 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 804 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 745 Query: 314 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccg 373 | ||||||||||||||||||||||||||||| |||||||||||||||| ||| || || Sbjct: 744 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgagtcctcggactcgt 685 Query: 374 accgcgcgtccttgagcgccgctctcttcttcttctt 410 |||||||||||||||||||||| |||||||||||||| Sbjct: 684 accgcgcgtccttgagcgccgccctcttcttcttctt 648 Score = 157 bits (79), Expect = 5e-35 Identities = 118/131 (90%) Strand = Plus / Minus Query: 436 ttcttcctcggccggtggccgccggacgtgcctacaattttacatccgagggagcagaag 495 |||||||| || |||| || |||||||| || ||||| || |||||||||||||||||| Sbjct: 601 ttcttccttgggcggtatccaccggacgtacccacaatcttgcatccgagggagcagaag 542 Query: 496 cggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttggtgactcccttgccc 555 ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 541 cggaaggagtcgaggaggctgcgctcgcagacctcgcaggtgttggtgacgcccttgccg 482 Query: 556 ggcctcggctg 566 ||||||||||| Sbjct: 481 ggcctcggctg 471
>dbj|AK066953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A21, full insert sequence Length = 1321 Score = 264 bits (133), Expect = 3e-67 Identities = 196/217 (90%) Strand = Plus / Minus Query: 194 cctagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgct 253 |||||| ||| ||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct: 868 cctagaactcgacgatgaggctgccgaagggggaccggtgcgggacgcccttgcggcgct 809 Query: 254 tgtttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgca 313 |||| |||| |||||||||| |||||| | |||||||||| |||||| ||||||||||| Sbjct: 808 tgttgccggtgcggtagctggcggaggtcggcggcggggtcaacggcgtgaagctctgca 749 Query: 314 ccacgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccg 373 | ||||||||||||||||||||||||||||| |||||||||||||||| ||| || || Sbjct: 748 cgacgctgctcttgtcgctgctgccgccgctggtgctcgtgcacgagtcctcggactcgt 689 Query: 374 accgcgcgtccttgagcgccgctctcttcttcttctt 410 |||||||||||||||||||||| |||||||||||||| Sbjct: 688 accgcgcgtccttgagcgccgccctcttcttcttctt 652 Score = 157 bits (79), Expect = 5e-35 Identities = 118/131 (90%) Strand = Plus / Minus Query: 436 ttcttcctcggccggtggccgccggacgtgcctacaattttacatccgagggagcagaag 495 |||||||| || |||| || |||||||| || ||||| || |||||||||||||||||| Sbjct: 605 ttcttccttgggcggtatccaccggacgtacccacaatcttgcatccgagggagcagaag 546 Query: 496 cggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttggtgactcccttgccc 555 ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 545 cggaaggagtcgaggaggctgcgctcgcagacctcgcaggtgttggtgacgcccttgccg 486 Query: 556 ggcctcggctg 566 ||||||||||| Sbjct: 485 ggcctcggctg 475
>ref|XM_473723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 196 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 719 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 660 Query: 256 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 315 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 659 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 603 Query: 316 acgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccgac 375 |||||||||||||| ||| |||||||||||| ||||| | |||| |||||||||||| Sbjct: 602 acgctgctcttgtc---gctcccgccgcttgtggtcgtggaggagtcgtccgagtccgac 546 Score = 127 bits (64), Expect = 4e-26 Identities = 100/112 (89%) Strand = Plus / Minus Query: 455 cgccggacgtgcctacaattttacatccgagggagcagaagcggaacgagtcgaggaggc 514 ||||||| ||||| || || || || |||||||||||||||||||| | |||||| |||| Sbjct: 466 cgccggaggtgccgacgatcttgcagccgagggagcagaagcggaaggtgtcgagcaggc 407 Query: 515 tgcgctcgcagacgtcgcaggtgttggtgactcccttgcccggcctcggctg 566 ||||||||||||| ||||||||||||||||| |||||||| ||||||||||| Sbjct: 406 tgcgctcgcagacctcgcaggtgttggtgacgcccttgccgggcctcggctg 355
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Plus Query: 196 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 5254 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 5313 Query: 256 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 315 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 5314 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 5370 Query: 316 acgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccgac 375 |||||||||||||| ||| |||||||||||| ||||| | |||| |||||||||||| Sbjct: 5371 acgctgctcttgtc---gctcccgccgcttgtggtcgtggaggagtcgtccgagtccgac 5427 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| Sbjct: 5621 ccgagggagcagaagcggaaggtgtcgagcaggctgcgctcgcagacctcgcaggtgttg 5680 Query: 541 gtgactcccttgcccggcctcggctg 566 ||||| |||||||| ||||||||||| Sbjct: 5681 gtgacgcccttgccgggcctcggctg 5706
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Plus Query: 196 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 29868502 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 29868561 Query: 256 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 315 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 29868562 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 29868618 Query: 316 acgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccgac 375 |||||||||||||| ||| |||||||||||| ||||| | |||| |||||||||||| Sbjct: 29868619 acgctgctcttgtc---gctcccgccgcttgtggtcgtggaggagtcgtccgagtccgac 29868675 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| Sbjct: 29868869 ccgagggagcagaagcggaaggtgtcgagcaggctgcgctcgcagacctcgcaggtgttg 29868928 Query: 541 gtgactcccttgcccggcctcggctg 566 ||||| |||||||| ||||||||||| Sbjct: 29868929 gtgacgcccttgccgggcctcggctg 29868954 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 279 ggtggccggcggggtcgacggcg 301 ||||||||||||||||||||||| Sbjct: 8086574 ggtggccggcggggtcgacggcg 8086552
>dbj|AK069139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008F14, full insert sequence Length = 1474 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Minus Query: 196 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 983 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 924 Query: 256 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 315 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 923 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 867 Query: 316 acgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccgac 375 |||||||||||||| ||| |||||||||||| ||||| | |||| |||||||||||| Sbjct: 866 acgctgctcttgtc---gctcccgccgcttgtggtcgtggaggagtcgtccgagtccgac 810 Score = 127 bits (64), Expect = 4e-26 Identities = 100/112 (89%) Strand = Plus / Minus Query: 455 cgccggacgtgcctacaattttacatccgagggagcagaagcggaacgagtcgaggaggc 514 ||||||| ||||| || || || || |||||||||||||||||||| | |||||| |||| Sbjct: 730 cgccggaggtgccgacgatcttgcagccgagggagcagaagcggaaggtgtcgagcaggc 671 Query: 515 tgcgctcgcagacgtcgcaggtgttggtgactcccttgcccggcctcggctg 566 ||||||||||||| ||||||||||||||||| |||||||| ||||||||||| Sbjct: 670 tgcgctcgcagacctcgcaggtgttggtgacgcccttgccgggcctcggctg 619
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 151 bits (76), Expect = 3e-33 Identities = 155/180 (86%), Gaps = 6/180 (3%) Strand = Plus / Plus Query: 196 tagagctccacgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 |||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct: 149428 tagaactccaccatgaggctgccgaacggcgaccggtgcgggacgcccttgcgacgcttg 149487 Query: 256 tttccggcgcggtagctgctggaggtggccggcggggtcgacggcgagaagctctgcacc 315 |||| |||||||||| ||| ||| ||||| || || ||||| | ||||||||||||| Sbjct: 149488 ---ccggtgcggtagctgttggcggtcgccggaggcgtggacggggtgaagctctgcacc 149544 Query: 316 acgctgctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccgac 375 |||||||||||||| ||| |||||||||||| ||||| | |||| |||||||||||| Sbjct: 149545 acgctgctcttgtc---gctcccgccgcttgtggtcgtggaggagtcgtccgagtccgac 149601 Score = 123 bits (62), Expect = 7e-25 Identities = 80/86 (93%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||| Sbjct: 149795 ccgagggagcagaagcggaaggtgtcgagcaggctgcgctcgcagacctcgcaggtgttg 149854 Query: 541 gtgactcccttgcccggcctcggctg 566 ||||| |||||||| ||||||||||| Sbjct: 149855 gtgacgcccttgccgggcctcggctg 149880
>gb|AY022797.1| Oryza sativa microsatellite MRG5122 containing (CGC)X8, closest to marker R3393, genomic sequence Length = 224 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 322 ctcttgtcgctgctgccgccgcttgtgctcgtgcacgagtgctccgagtccgaccgcgcg 381 ||||||||||||||||||||||| |||||||||||||||| ||| || || |||||||| Sbjct: 1 ctcttgtcgctgctgccgccgctggtgctcgtgcacgagtcctcggactcgtaccgcgcg 60 Query: 382 tccttgagcgccgctctcttcttcttctt 410 |||||||||||||| |||||||||||||| Sbjct: 61 tccttgagcgccgccctcttcttcttctt 89
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||| Sbjct: 24775851 ccgagggagcagaagcggaaggagtcggggaggctgcggcagcagatctcgcaggtgttg 24775792 Query: 541 gtgactcccttgcccggcctcggctgcgg 569 ||||| ||||| || ||||||| |||||| Sbjct: 24775791 gtgacgcccttcccgggcctcgcctgcgg 24775763 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gagctccacgatgaggctgc 217 |||||||||||||||||||| Sbjct: 27283200 gagctccacgatgaggctgc 27283181
>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0029G06 Length = 169711 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||| Sbjct: 109532 ccgagggagcagaagcggaaggagtcggggaggctgcggcagcagatctcgcaggtgttg 109473 Query: 541 gtgactcccttgcccggcctcggctgcgg 569 ||||| ||||| || ||||||| |||||| Sbjct: 109472 gtgacgcccttcccgggcctcgcctgcgg 109444
>dbj|AK067251.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099A07, full insert sequence Length = 1274 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||| Sbjct: 573 ccgagggagcagaagcggaaggagtcggggaggctgcggcagcagatctcgcaggtgttg 514 Query: 541 gtgactcccttgcccggcctcggctgcgg 569 ||||| ||||| || ||||||| |||||| Sbjct: 513 gtgacgcccttcccgggcctcgcctgcgg 485
>dbj|AK065620.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030D23, full insert sequence Length = 1762 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||| Sbjct: 673 ccgagggagcagaagcggaaggagtcggggaggctgcggcagcagatctcgcaggtgttg 614 Query: 541 gtgactcccttgcccggcctcggctgcgg 569 ||||| ||||| || ||||||| |||||| Sbjct: 613 gtgacgcccttcccgggcctcgcctgcgg 585
>dbj|AK061790.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-F02, full insert sequence Length = 1264 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| |||||| |||||||||| ||||| |||||||||||| Sbjct: 576 ccgagggagcagaagcggaaggagtcggggaggctgcggcagcagatctcgcaggtgttg 517 Query: 541 gtgactcccttgcccggcctcggctgcgg 569 ||||| ||||| || ||||||| |||||| Sbjct: 516 gtgacgcccttcccgggcctcgcctgcgg 488
>gb|AY107136.1| Zea mays PCO101290 mRNA sequence Length = 678 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Minus Query: 205 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgctt 254 |||||||||||||||||||| | |||||||||||||||||||||||||| Sbjct: 314 acgatgaggctgccgaacggggcgcggtgcgggatgcccttgcggcgctt 265 Score = 60.0 bits (30), Expect = 8e-06 Identities = 48/54 (88%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcag 534 |||||||||||||||||||| ||||||||||||||| ||||||| |||||| Sbjct: 104 ccgagggagcagaagcggaagttgtcgaggaggctgcgggcgcagacctcgcag 51
>ref|NM_197866.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0003O19.3), mRNA Length = 1190 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 205 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 ||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct: 755 acgatgaggctgccgaatggcgcgcggtgtggaatgcccttgcggcgcttg 705 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||| Sbjct: 515 ccgagggagcagaagcggaagttgtcgaggaggctgcggctgcagacctcgcagatgttg 456 Query: 541 g 541 | Sbjct: 455 g 455
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 205 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 ||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct: 22309910 acgatgaggctgccgaatggcgcgcggtgtggaatgcccttgcggcgcttg 22309960 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||| Sbjct: 22310150 ccgagggagcagaagcggaagttgtcgaggaggctgcggctgcagacctcgcagatgttg 22310209 Query: 541 g 541 | Sbjct: 22310210 g 22310210 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 cggcggggtcgacggcgaga 304 |||||||||||||||||||| Sbjct: 20957730 cggcggggtcgacggcgaga 20957711
>gb|AC060755.9|AC060755 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence Length = 172427 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 205 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 ||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct: 127153 acgatgaggctgccgaatggcgcgcggtgtggaatgcccttgcggcgcttg 127203 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||| Sbjct: 127393 ccgagggagcagaagcggaagttgtcgaggaggctgcggctgcagacctcgcagatgttg 127452 Query: 541 g 541 | Sbjct: 127453 g 127453
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 205 acgatgaggctgccgaacggcgaccggtgcgggatgcccttgcggcgcttg 255 ||||||||||||||||| |||| ||||| || |||||||||||||||||| Sbjct: 22321978 acgatgaggctgccgaatggcgcgcggtgtggaatgcccttgcggcgcttg 22322028 Score = 58.0 bits (29), Expect = 3e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggaggctgcgctcgcagacgtcgcaggtgttg 540 |||||||||||||||||||| ||||||||||||||| |||||| |||||| ||||| Sbjct: 22322218 ccgagggagcagaagcggaagttgtcgaggaggctgcggctgcagacctcgcagatgttg 22322277 Query: 541 g 541 | Sbjct: 22322278 g 22322278 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 cggcggggtcgacggcgaga 304 |||||||||||||||||||| Sbjct: 20968994 cggcggggtcgacggcgaga 20968975
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggagg 513 |||||||||||||||||||| | |||||||||| Sbjct: 28053350 ccgagggagcagaagcggaaggggtcgaggagg 28053382
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggagg 513 |||||||||||||||||||| | |||||||||| Sbjct: 8931817 ccgagggagcagaagcggaatgggtcgaggagg 8931785
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggagg 513 |||||||||||||||||||| | |||||||||| Sbjct: 130842 ccgagggagcagaagcggaaggggtcgaggagg 130874
>dbj|AP004176.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1057_E05 Length = 103229 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggagg 513 |||||||||||||||||||| | |||||||||| Sbjct: 57974 ccgagggagcagaagcggaatgggtcgaggagg 57942
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0604E01 Length = 159049 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaacgagtcgaggagg 513 |||||||||||||||||||| | |||||||||| Sbjct: 50845 ccgagggagcagaagcggaaggggtcgaggagg 50877
>dbj|AK060208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B01, full insert sequence Length = 1538 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaacgagtcgaggagg 513 |||||||||||||||||||| | |||||||||| Sbjct: 545 ccgagggagcagaagcggaaggggtcgaggagg 513
>emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055H05, complete sequence Length = 152329 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 279 ggtggccggcggggtcgacggcg 301 ||||||||||||||||||||||| Sbjct: 148698 ggtggccggcggggtcgacggcg 148676
>emb|AL606597.4|OSJN00042 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0045P24, complete sequence Length = 124420 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 279 ggtggccggcggggtcgacggcg 301 ||||||||||||||||||||||| Sbjct: 20106 ggtggccggcggggtcgacggcg 20084
>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07 map S790A, complete sequence Length = 178523 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Plus Query: 484 agggagcagaagcggaacgagtcgaggagg 513 ||||||||||||||||| | |||||||||| Sbjct: 42850 agggagcagaagcggaatgggtcgaggagg 42879
>gb|AC148237.7| Medicago truncatula clone mth2-1o14, complete sequence Length = 116678 Score = 44.1 bits (22), Expect = 0.50 Identities = 52/62 (83%) Strand = Plus / Plus Query: 505 tcgaggaggctgcgctcgcagacgtcgcaggtgttggtgactcccttgcccggcctcggc 564 ||||| ||||| ||||||||||| || || ||||||||||| || || || ||||| ||| Sbjct: 72238 tcgagaaggctacgctcgcagacttcacaagtgttggtgacaccttttccgggccttggc 72297 Query: 565 tg 566 || Sbjct: 72298 tg 72299
>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 3/8 Length = 347625 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 236 ggatgcccttgcggcgcttgtt 257 |||||||||||||||||||||| Sbjct: 289159 ggatgcccttgcggcgcttgtt 289180
>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 1/8 Length = 348517 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 236 ggatgcccttgcggcgcttgtt 257 |||||||||||||||||||||| Sbjct: 100687 ggatgcccttgcggcgcttgtt 100666
>gb|DQ353853.1| Triticum aestivum AP2 domain transcription factor TaDREB3 mRNA, complete cds Length = 1004 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 286 ggcggggtcgacggcgagaagc 307 |||||||||||||||||||||| Sbjct: 429 ggcggggtcgacggcgagaagc 408
>gb|AF243074.1|AF243074 Stigmatella aurantiaca 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (aroAA2) gene, complete cds Length = 1515 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 92 tcgccgttcagggcgcgcagct 113 |||||||||||||||||||||| Sbjct: 605 tcgccgttcagggcgcgcagct 584
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 484 agggagcagaagcggaacgagtcgaggagg 513 ||||||||||||||||| | |||||||||| Sbjct: 13141230 agggagcagaagcggaatgggtcgaggagg 13141201
>gb|AY439015.3| Mycobacterium smegmatis isolate mc2 155 insertion sequence IS1096 TnpA (tnpA) and TnpR genes, complete cds; and GPL gene cluster, complete sequence Length = 67229 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 gaggtggccggcggggtcgacg 298 |||||||||||||||||||||| Sbjct: 61002 gaggtggccggcggggtcgacg 61023
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.50 Identities = 28/30 (93%) Strand = Plus / Minus Query: 484 agggagcagaagcggaacgagtcgaggagg 513 ||||||||||||||||| | |||||||||| Sbjct: 13221409 agggagcagaagcggaatgggtcgaggagg 13221380
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tgctggaggtggccggcgggg 292 ||||||||||||||||||||| Sbjct: 2247196 tgctggaggtggccggcgggg 2247176 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 ttcctcggccggtggccgcc 458 |||||||||||||||||||| Sbjct: 2351609 ttcctcggccggtggccgcc 2351628
>dbj|AB193035.1| Corynebacterium glutamicum DNA, strain specific island 8, strain: R Length = 45095 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 275 tggaggtggccggcggggtcg 295 ||||||||||||||||||||| Sbjct: 4602 tggaggtggccggcggggtcg 4622
>ref|XM_464434.1| Oryza sativa (japonica cultivar-group), mRNA Length = 921 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 481 ccgagggagcagaagcggaa 500 |||||||||||||||||||| Sbjct: 506 ccgagggagcagaagcggaa 487
>ref|NM_197639.1| Oryza sativa (japonica cultivar-group) putative outer envelope protein (OSJNBa0082M15.3), mRNA Length = 3275 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cggcggggtcgacggcgaga 304 |||||||||||||||||||| Sbjct: 9 cggcggggtcgacggcgaga 28
>ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1119 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gccggcggggtcgacggcga 302 |||||||||||||||||||| Sbjct: 435 gccggcggggtcgacggcga 416
>ref|XM_470526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 987 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 cgctgctgccgccgcttgtgctcgtgca 356 |||||||||||||||| |||||||||| Sbjct: 158 cgctgctgccgccgctgctgctcgtgca 185
>ref|XM_953828.1| Neurospora crassa OR74A hypothetical protein (NCU09342.1) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 tgctcttgtcgctgctgccgccgc 343 |||||||| ||||||||||||||| Sbjct: 391 tgctcttgccgctgctgccgccgc 368
>ref|XM_332033.1| Neurospora crassa OR74A hypothetical protein (NCU09342.1) partial mRNA Length = 579 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 320 tgctcttgtcgctgctgccgccgc 343 |||||||| ||||||||||||||| Sbjct: 391 tgctcttgccgctgctgccgccgc 368
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 329 cgctgctgccgccgcttgtgctcgtgca 356 |||||||||||||||| |||||||||| Sbjct: 4117972 cgctgctgccgccgctgctgctcgtgca 4117945
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ccacgctgctcttgtcgctg 333 |||||||||||||||||||| Sbjct: 994016 ccacgctgctcttgtcgctg 993997
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 ctgctggaggtggccggcggggtc 294 ||||||||||||| |||||||||| Sbjct: 52432 ctgctggaggtggacggcggggtc 52455
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 ctgctggaggtggccggcggggtc 294 ||||||||||||| |||||||||| Sbjct: 317355 ctgctggaggtggacggcggggtc 317378
>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12 Length = 349726 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 271 ctgctggaggtggccggcggggtc 294 ||||||||||||| |||||||||| Sbjct: 5292 ctgctggaggtggacggcggggtc 5269
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 40.1 bits (20), Expect = 7.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 315 cacgctgctcttgtcgctgctgccgccgcttgtgct 350 ||||||||| ||| ||||||||||||||| ||||| Sbjct: 63647 cacgctgctgctgtggctgctgccgccgctggtgct 63682
>emb|AJ748587.1| Phanerochaete chrysosporium partial mRNA for subtilisin-like protease (sl gene), strain Burdsall M1 Length = 2505 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 cgcgcgtccttgagcgccgc 395 |||||||||||||||||||| Sbjct: 2021 cgcgcgtccttgagcgccgc 2002
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gccggcggggtcgacggcga 302 |||||||||||||||||||| Sbjct: 4346 gccggcggggtcgacggcga 4327
>dbj|AP000570.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0711E10 Length = 157903 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgccgctctcttcttcttct 409 |||||||||||||||||||| Sbjct: 99802 cgccgctctcttcttcttct 99821
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 gtgctccgagtccgaccgcg 379 |||||||||||||||||||| Sbjct: 1757298 gtgctccgagtccgaccgcg 1757279
>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete sequence Length = 158550 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cggcggggtcgacggcgaga 304 |||||||||||||||||||| Sbjct: 106661 cggcggggtcgacggcgaga 106680
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tgctgccgccgcttgtgctc 351 |||||||||||||||||||| Sbjct: 526018 tgctgccgccgcttgtgctc 525999
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 329 cgctgctgccgccgcttgtgctcgtgca 356 |||||||||||||||| |||||||||| Sbjct: 4118081 cgctgctgccgccgctgctgctcgtgca 4118054
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gccggcggggtcgacggcga 302 |||||||||||||||||||| Sbjct: 40205394 gccggcggggtcgacggcga 40205375 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgccgctctcttcttcttct 409 |||||||||||||||||||| Sbjct: 8524649 cgccgctctcttcttcttct 8524668
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gccggcggggtcgacggcga 302 |||||||||||||||||||| Sbjct: 148478 gccggcggggtcgacggcga 148459
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gccggcggggtcgacggcga 302 |||||||||||||||||||| Sbjct: 71172 gccggcggggtcgacggcga 71153
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 atcgccgttcagggcgcgca 110 |||||||||||||||||||| Sbjct: 3106647 atcgccgttcagggcgcgca 3106628
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 gctggaggtggccggcgggg 292 |||||||||||||||||||| Sbjct: 523823 gctggaggtggccggcgggg 523842
>gb|AC125472.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0050H14, complete sequence Length = 142245 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 329 cgctgctgccgccgcttgtgctcgtgca 356 |||||||||||||||| |||||||||| Sbjct: 18609 cgctgctgccgccgctgctgctcgtgca 18582
>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0705D01 Length = 147174 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 cgccgctctcttcttcttct 409 |||||||||||||||||||| Sbjct: 139604 cgccgctctcttcttcttct 139623
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tgcccggcctcggctgcggc 570 |||||||||||||||||||| Sbjct: 1251757 tgcccggcctcggctgcggc 1251738
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0637D03 Length = 180159 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gagctccacgatgaggctgc 217 |||||||||||||||||||| Sbjct: 140216 gagctccacgatgaggctgc 140197
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 gagctccacgatgaggctgc 217 |||||||||||||||||||| Sbjct: 26027 gagctccacgatgaggctgc 26008
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0437H03 Length = 170173 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 ccgagggagcagaagcggaa 500 |||||||||||||||||||| Sbjct: 97563 ccgagggagcagaagcggaa 97582
>dbj|AK108257.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-A10, full insert sequence Length = 1173 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 cgctgctgccgccgcttgtgctcgtgca 356 |||||||||||||||| |||||||||| Sbjct: 197 cgctgctgccgccgctgctgctcgtgca 224
>dbj|AK072270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008M11, full insert sequence Length = 3464 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cggcggggtcgacggcgaga 304 |||||||||||||||||||| Sbjct: 155 cggcggggtcgacggcgaga 174
>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full insert sequence Length = 1334 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gccggcggggtcgacggcga 302 |||||||||||||||||||| Sbjct: 463 gccggcggggtcgacggcga 444
>ref|NM_210155.1| Eremothecium gossypii AEL060Cp (AEL060C), mRNA Length = 1290 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 tgctgccgccgcttgtgctc 351 |||||||||||||||||||| Sbjct: 341 tgctgccgccgcttgtgctc 360
>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete sequence Length = 205436 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 accttcttggctatgtcacg 136 |||||||||||||||||||| Sbjct: 182806 accttcttggctatgtcacg 182825 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,143,486 Number of Sequences: 3902068 Number of extensions: 4143486 Number of successful extensions: 94573 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92889 Number of HSP's gapped (non-prelim): 1674 length of query: 570 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 547 effective length of database: 17,143,297,704 effective search space: 9377383844088 effective search space used: 9377383844088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)