ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal21b17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEM0_BRARE (Q9YHT4) 5-aminolevulinate synthase, erythroid-specif... 30 4.8
2RB97D_DROME (Q02926) Ribonucleoprotein RB97D 30 6.2
3TECTA_HUMAN (O75443) Alpha-tectorin precursor 29 8.1
4RRPL_BUNYW (P20470) RNA-directed RNA polymerase (EC 2.7.7.48) (L... 29 8.1

>HEM0_BRARE (Q9YHT4) 5-aminolevulinate synthase, erythroid-specific,|
           mitochondrial precursor (EC 2.3.1.37) (5-aminolevulinic
           acid synthase) (Delta-aminolevulinate synthase)
           (Delta-ALA synthetase) (ALAS-E)
          Length = 583

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 412 NFENQQASSMFQDQFFCTRNDQSSGETHLFRD 317
           N ENQ  S +    F   ++ QS+G THL +D
Sbjct: 100 NLENQDTSGLISSLFSGLQSHQSTGPTHLLQD 131



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>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 319 PEIGEFHPNFGHSLCRRTGPGTWNWLADFRSCSSPIYQQVTLMQ 450
           P +G   P  GH+    T PG WN        + P +QQ +  Q
Sbjct: 337 PPVGAVPPPMGHNGPPPTAPGNWNMPPPVPGAAPPSHQQQSSQQ 380



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>TECTA_HUMAN (O75443) Alpha-tectorin precursor|
          Length = 2155

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
 Frame = +1

Query: 268 LQSAIQAFSLITSG*GSPEIGEFH-----------PNFGH-SLCRRTGPGTWNWLADFRS 411
           L  AIQA++L+    G P IG++            P+F H S+C  + P T + L   R+
Sbjct: 564 LCQAIQAYALVCQALGIP-IGDWRTQTGCVSTVQCPSFSHYSVCTSSCPDTCSDLTASRN 622

Query: 412 CSSP 423
           C++P
Sbjct: 623 CATP 626



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>RRPL_BUNYW (P20470) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 2238

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +1

Query: 1    MIGEGLKTTITEVNYPNNTLKSAQGLKNKRLNPQN*K*RLRNEYKRRYSNDLAK**YSRQ 180
            ++GE  K  I E+  PN    +     NK LN ++    L+ EY      D        +
Sbjct: 1850 VVGEDNKLKIAELTIPNFYPNTVFHAGNKLLNSRH---GLKFEYMEEIVLD-------EK 1899

Query: 181  FNYVITHRKKVLYYS*TAASTVLH 252
            +NY IT++KK  +      ST+ H
Sbjct: 1900 YNYYITYQKKRAHIYTYQVSTIEH 1923


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,263,743
Number of Sequences: 219361
Number of extensions: 1290365
Number of successful extensions: 2674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2673
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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