| Clone Name | rbaal21b08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059369.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-E11, full insert sequence Length = 1198 Score = 379 bits (191), Expect = e-102 Identities = 326/371 (87%) Strand = Plus / Minus Query: 249 ctaaactctggggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccat 308 ||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct: 950 ctaaaatctggggtaccagaacatgcccttgatgccttgagggtcagcttcgaatcccaa 891 Query: 309 gttcttgtagaagtccaccactttactatctgcaaatagcgtgatgttgctgatgtccct 368 |||||||||||| || || ||||| |||||||||| ||||| || ||||||||||| || Sbjct: 890 gttcttgtagaaatctacaactttgttatctgcaaacagcgtaatattgctgatgtctct 831 Query: 369 ctggagcaaagtacggatcactttctccatgagtgttttaccaagaccttgaccctgata 428 |||||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| Sbjct: 830 ctggagcaaagttcggattactttctccattaacgctttaccaagaccttgaccctgata 771 Query: 429 ggaaggatcaacgaggacgtcccagattgtagcattgaacgcatggtctgaagttgcccg 488 ||||| |||||||| || ||||| || |||||||| || ||||||||||||||||| || Sbjct: 770 tgaagggtcaacgagaacatcccaaatggtagcattaaaggcatggtctgaagttgctcg 711 Query: 489 cgccataccaatcagttgcttcttctcttctccctctgtttctgaagacctgattattga 548 |||||||||||| ||||||||| ||||||||||||||| || ||||| | | | | ||| Sbjct: 710 cgccataccaattagttgcttcctctcttctccctctgcttttgaaggcatagtaactga 651 Query: 549 atgtagtgtagcgaccaagtagctgtttcttaaggatgctgctattttcgttagaggtct 608 |||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| ||||| Sbjct: 650 atgtagtgtagcaaccaggtaactgtttcttaaggatgctgctattttggttaggggtct 591 Query: 609 acgtggccatc 619 |||||||||| Sbjct: 590 gcgtggccatc 580
>dbj|AK104449.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-A12, full insert sequence Length = 1122 Score = 307 bits (155), Expect = 2e-80 Identities = 248/279 (88%) Strand = Plus / Minus Query: 249 ctaaactctggggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccat 308 ||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct: 960 ctaaaatctggggtaccagaacatgcccttgatgccttgagggtcagcttcgaatcccaa 901 Query: 309 gttcttgtagaagtccaccactttactatctgcaaatagcgtgatgttgctgatgtccct 368 |||||||||||| || || ||||| |||||||||| ||||| || ||||||||||| || Sbjct: 900 gttcttgtagaaatctacaactttgttatctgcaaacagcgtaatattgctgatgtctct 841 Query: 369 ctggagcaaagtacggatcactttctccatgagtgttttaccaagaccttgaccctgata 428 |||||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| Sbjct: 840 ctggagcaaagttcggattactttctccattaacgctttaccaagaccttgaccctgata 781 Query: 429 ggaaggatcaacgaggacgtcccagattgtagcattgaacgcatggtctgaagttgcccg 488 ||||| |||||||| || ||||| || |||||||| || ||||||||||||||||| || Sbjct: 780 tgaagggtcaacgagaacatcccaaatggtagcattaaaggcatggtctgaagttgctcg 721 Query: 489 cgccataccaatcagttgcttcttctcttctccctctgt 527 |||||||||||| ||||||||| |||||||||||||||| Sbjct: 720 cgccataccaattagttgcttcctctcttctccctctgt 682 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 546 tgaatgtagtgtagcgaccaagtagctgtttcttaaggatgctgctattttcgttagagg 605 ||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || Sbjct: 649 tgaatgtagtgtagcaaccaggtaactgtttcttaaggatgctgctattttggttagggg 590 Query: 606 tctacgtggccatc 619 ||| |||||||||| Sbjct: 589 tctgcgtggccatc 576
>dbj|AK068619.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157F02, full insert sequence Length = 1267 Score = 307 bits (155), Expect = 2e-80 Identities = 248/279 (88%) Strand = Plus / Minus Query: 249 ctaaactctggggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccat 308 ||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct: 1007 ctaaaatctggggtaccagaacatgcccttgatgccttgagggtcagcttcgaatcccaa 948 Query: 309 gttcttgtagaagtccaccactttactatctgcaaatagcgtgatgttgctgatgtccct 368 |||||||||||| || || ||||| |||||||||| ||||| || ||||||||||| || Sbjct: 947 gttcttgtagaaatctacaactttgttatctgcaaacagcgtaatattgctgatgtctct 888 Query: 369 ctggagcaaagtacggatcactttctccatgagtgttttaccaagaccttgaccctgata 428 |||||||||||| ||||| ||||||||||| | | |||||||||||||||||||||||| Sbjct: 887 ctggagcaaagttcggattactttctccattaacgctttaccaagaccttgaccctgata 828 Query: 429 ggaaggatcaacgaggacgtcccagattgtagcattgaacgcatggtctgaagttgcccg 488 ||||| |||||||| || ||||| || |||||||| || ||||||||||||||||| || Sbjct: 827 tgaagggtcaacgagaacatcccaaatggtagcattaaaggcatggtctgaagttgctcg 768 Query: 489 cgccataccaatcagttgcttcttctcttctccctctgt 527 |||||||||||| ||||||||| |||||||||||||||| Sbjct: 767 cgccataccaattagttgcttcctctcttctccctctgt 729 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 546 tgaatgtagtgtagcgaccaagtagctgtttcttaaggatgctgctattttcgttagagg 605 ||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || Sbjct: 653 tgaatgtagtgtagcaaccaggtaactgtttcttaaggatgctgctattttggttagggg 594 Query: 606 tctacgtggccatc 619 ||| |||||||||| Sbjct: 593 tctgcgtggccatc 580
>gb|BT016239.1| Zea mays clone Contig72 mRNA sequence Length = 1395 Score = 230 bits (116), Expect = 4e-57 Identities = 239/280 (85%) Strand = Plus / Minus Query: 248 gctaaactctggggtaccagaacatgcccttgatgccctgggggtcagcttcgaacccca 307 |||||| |||||||||||||||||||||||||||||| || || ||| |||||||||||| Sbjct: 1045 gctaaaatctggggtaccagaacatgcccttgatgccttgaggatcaacttcgaacccca 986 Query: 308 tgttcttgtagaagtccaccactttactatctgcaaatagcgtgatgttgctgatgtccc 367 |||||||||||| || | ||||| |||| ||||| || || |||||| ||||||| | Sbjct: 985 ggttcttgtagaaatctataactttgttatccgcaaacagtgtaatgttgttgatgtctc 926 Query: 368 tctggagcaaagtacggatcactttctccatgagtgttttaccaagaccttgaccctgat 427 ||||||||||||||| | |||||||||||||| |||||||||||| |||||||| | Sbjct: 925 gctggagcaaagtacgatttcttttctccatgagtgctttaccaagaccctgaccctggt 866 Query: 428 aggaaggatcaacgaggacgtcccagattgtagcattgaacgcatggtctgaagttgccc 487 | ||||||||||| ||||| ||||| || || |||||||| ||||||||||| ||||| | Sbjct: 865 atgaaggatcaacaaggacatcccaaatcgttgcattgaaggcatggtctgaggttgctc 806 Query: 488 gcgccataccaatcagttgcttcttctcttctccctctgt 527 | ||||| ||||| || || |||||||||||||||||||| Sbjct: 805 gtgccatcccaatgagctgtttcttctcttctccctctgt 766 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 524 ctgtttctgaagacctgattattgaatgtagtgtagcgaccaagtagctgtttcttaagg 583 ||||||||||||| || |||||||||| ||||||||| ||||||||||| |||||||| | Sbjct: 622 ctgtttctgaagatctaattattgaatatagtgtagcaaccaagtagctatttcttaatg 563 Query: 584 atgctgctattttcgttagaggtctacgtggccatc 619 | |||||||| || | ||||| || |||||||||| Sbjct: 562 aggctgctatctttgaaagaggcctgcgtggccatc 527
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 123 bits (62), Expect = 7e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 422 cctgataggaaggatcaacgaggacgtcccagattgtagcattgaacgcatggtctgaag 481 ||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||||| Sbjct: 23501497 cctgatatgaagggtcaacgagaacatcccaaatggtagcattaaaggcatggtctgaag 23501438 Query: 482 ttgcccgcgccataccaatcagttgcttcttctcttctccctctgt 527 |||| |||||||||||||| ||||||||| |||||||||||||||| Sbjct: 23501437 ttgctcgcgccataccaattagttgcttcctctcttctccctctgt 23501392 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 249 ctaaactctggggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccat 308 ||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct: 23502626 ctaaaatctggggtaccagaacatgcccttgatgccttgagggtcagcttcgaatcccaa 23502567 Query: 309 gttcttgtagaa 320 |||||||||||| Sbjct: 23502566 gttcttgtagaa 23502555 Score = 103 bits (52), Expect = 7e-19 Identities = 82/92 (89%) Strand = Plus / Minus Query: 335 tatctgcaaatagcgtgatgttgctgatgtccctctggagcaaagtacggatcactttct 394 |||||||||| ||||| || ||||||||||| |||||||||||||| ||||| ||||||| Sbjct: 23501663 tatctgcaaacagcgtaatattgctgatgtctctctggagcaaagttcggattactttct 23501604 Query: 395 ccatgagtgttttaccaagaccttgaccctga 426 |||| | | |||||||||||||||||||||| Sbjct: 23501603 ccattaacgctttaccaagaccttgaccctga 23501572 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 546 tgaatgtagtgtagcgaccaagtagctgtttcttaaggatgctgctattttcgttagagg 605 ||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || Sbjct: 23501226 tgaatgtagtgtagcaaccaggtaactgtttcttaaggatgctgctattttggttagggg 23501167 Query: 606 tctacgtggccatc 619 ||| |||||||||| Sbjct: 23501166 tctgcgtggccatc 23501153
>gb|AC137619.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0095J22, complete sequence Length = 151730 Score = 123 bits (62), Expect = 7e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 422 cctgataggaaggatcaacgaggacgtcccagattgtagcattgaacgcatggtctgaag 481 ||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||||| Sbjct: 37221 cctgatatgaagggtcaacgagaacatcccaaatggtagcattaaaggcatggtctgaag 37162 Query: 482 ttgcccgcgccataccaatcagttgcttcttctcttctccctctgt 527 |||| |||||||||||||| ||||||||| |||||||||||||||| Sbjct: 37161 ttgctcgcgccataccaattagttgcttcctctcttctccctctgt 37116 Score = 103 bits (52), Expect = 7e-19 Identities = 67/72 (93%) Strand = Plus / Minus Query: 249 ctaaactctggggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccat 308 ||||| |||||||||||||||||||||||||||||| || |||||||||||||| |||| Sbjct: 38350 ctaaaatctggggtaccagaacatgcccttgatgccttgagggtcagcttcgaatcccaa 38291 Query: 309 gttcttgtagaa 320 |||||||||||| Sbjct: 38290 gttcttgtagaa 38279 Score = 103 bits (52), Expect = 7e-19 Identities = 82/92 (89%) Strand = Plus / Minus Query: 335 tatctgcaaatagcgtgatgttgctgatgtccctctggagcaaagtacggatcactttct 394 |||||||||| ||||| || ||||||||||| |||||||||||||| ||||| ||||||| Sbjct: 37387 tatctgcaaacagcgtaatattgctgatgtctctctggagcaaagttcggattactttct 37328 Query: 395 ccatgagtgttttaccaagaccttgaccctga 426 |||| | | |||||||||||||||||||||| Sbjct: 37327 ccattaacgctttaccaagaccttgaccctga 37296 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 546 tgaatgtagtgtagcgaccaagtagctgtttcttaaggatgctgctattttcgttagagg 605 ||||||||||||||| |||| ||| |||||||||||||||||||||||||| ||||| || Sbjct: 36950 tgaatgtagtgtagcaaccaggtaactgtttcttaaggatgctgctattttggttagggg 36891 Query: 606 tctacgtggccatc 619 ||| |||||||||| Sbjct: 36890 tctgcgtggccatc 36877
>gb|AY105893.1| Zea mays PCO126260 mRNA sequence Length = 841 Score = 87.7 bits (44), Expect = 4e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 524 ctgtttctgaagacctgattattgaatgtagtgtagcgaccaagtagctgtttcttaagg 583 ||||||||||||| || |||||||||| ||||||||| ||||||||||| |||||||| | Sbjct: 659 ctgtttctgaagatctaattattgaatatagtgtagcaaccaagtagctatttcttaatg 600 Query: 584 atgctgctattttcgttagaggtctacgtggccatc 619 | |||||||| || | ||||| || |||||||||| Sbjct: 599 aggctgctatctttgaaagaggcctgcgtggccatc 564 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ttcttctcttctccctctgt 527 |||||||||||||||||||| Sbjct: 822 ttcttctcttctccctctgt 803
>ref|NM_102941.1| Arabidopsis thaliana N-acetyltransferase AT1G32070 transcript variant AT1G32070.1 mRNA, complete cds Length = 916 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 259 gggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccatgttcttgtag 318 |||||||| |||||||| |||||||| | || ||||| || ||||||| ||||| ||| Sbjct: 783 gggtaccaaaacatgcctttgatgccttctggatcagcctcaaaccccaagttctgatag 724 Query: 319 aagtccaccactttactatctgcaaa 344 || ||||| |||| |||||||||||| Sbjct: 723 aaatccacaacttgactatctgcaaa 698 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 405 tttaccaagaccttgaccctgataggaaggatcaacgaggacgtcccagattgtagcatt 464 |||||| || |||||||||||||| ||||||||| || || ||||| ||||||||||| Sbjct: 637 tttacctagcccttgaccctgatattcaggatcaacaagaacatcccaaattgtagcatt 578 Query: 465 gaacgcatggtctgaagttgcccgcgccataccaat 500 || ||||| || || || || || ||||||||||| Sbjct: 577 aaaggcatgatccgacgtcgcacgtgccataccaat 542
>ref|NM_202221.1| Arabidopsis thaliana N-acetyltransferase AT1G32070 transcript variant AT1G32070.2 mRNA, complete cds Length = 993 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 259 gggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccatgttcttgtag 318 |||||||| |||||||| |||||||| | || ||||| || ||||||| ||||| ||| Sbjct: 819 gggtaccaaaacatgcctttgatgccttctggatcagcctcaaaccccaagttctgatag 760 Query: 319 aagtccaccactttactatctgcaaa 344 || ||||| |||| |||||||||||| Sbjct: 759 aaatccacaacttgactatctgcaaa 734 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 405 tttaccaagaccttgaccctgataggaaggatcaacgaggacgtcccagattgtagcatt 464 |||||| || |||||||||||||| ||||||||| || || ||||| ||||||||||| Sbjct: 673 tttacctagcccttgaccctgatattcaggatcaacaagaacatcccaaattgtagcatt 614 Query: 465 gaacgcatggtctgaagttgcccgcgccataccaat 500 || ||||| || || || || || ||||||||||| Sbjct: 613 aaaggcatgatccgacgtcgcacgtgccataccaat 578
>gb|AY281105.1| Arabidopsis thaliana nuclear shuttle interacting protein (NSI) mRNA, complete cds Length = 947 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 259 gggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccatgttcttgtag 318 |||||||| |||||||| |||||||| | || ||||| || ||||||| ||||| ||| Sbjct: 819 gggtaccaaaacatgcctttgatgccttctggatcagcctcaaaccccaagttctgatag 760 Query: 319 aagtccaccactttactatctgcaaa 344 || ||||| |||| |||||||||||| Sbjct: 759 aaatccacaacttgactatctgcaaa 734 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 405 tttaccaagaccttgaccctgataggaaggatcaacgaggacgtcccagattgtagcatt 464 |||||| || |||||||||||||| ||||||||| || || ||||| ||||||||||| Sbjct: 673 tttacctagcccttgaccctgatattcaggatcaacaagaacatcccaaattgtagcatt 614 Query: 465 gaacgcatggtctgaagttgcccgcgccataccaat 500 || ||||| || || || || || ||||||||||| Sbjct: 613 aaaggcatgatccgacgtcgcacgtgccataccaat 578
>gb|BT024481.1| Arabidopsis thaliana At1g32070 mRNA, complete cds Length = 774 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 259 gggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccatgttcttgtag 318 |||||||| |||||||| |||||||| | || ||||| || ||||||| ||||| ||| Sbjct: 767 gggtaccaaaacatgcctttgatgccttctggatcagcctcaaaccccaagttctgatag 708 Query: 319 aagtccaccactttactatctgcaaa 344 || ||||| |||| |||||||||||| Sbjct: 707 aaatccacaacttgactatctgcaaa 682 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 405 tttaccaagaccttgaccctgataggaaggatcaacgaggacgtcccagattgtagcatt 464 |||||| || |||||||||||||| ||||||||| || || ||||| ||||||||||| Sbjct: 621 tttacctagcccttgaccctgatattcaggatcaacaagaacatcccaaattgtagcatt 562 Query: 465 gaacgcatggtctgaagttgcccgcgccataccaat 500 || ||||| || || || || || ||||||||||| Sbjct: 561 aaaggcatgatccgacgtcgcacgtgccataccaat 526
>emb|BX817946.1|CNS0AEC8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZE01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 959 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 259 gggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccatgttcttgtag 318 |||||||| |||||||| |||||||| | || ||||| || ||||||| ||||| ||| Sbjct: 795 gggtaccaaaacatgcctttgatgccttctggatcagcctcaaaccccaagttctgatag 736 Query: 319 aagtccaccactttactatctgcaaa 344 || ||||| |||| |||||||||||| Sbjct: 735 aaatccacaacttgactatctgcaaa 710 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 405 tttaccaagaccttgaccctgataggaaggatcaacgaggacgtcccagattgtagcatt 464 |||||| || |||||||||||||| ||||||||| || || ||||| ||||||||||| Sbjct: 649 tttacctagcccttgaccctgatattcaggatcaacaagaacatcccaaattgtagcatt 590 Query: 465 gaacgcatggtctgaagttgcccgcgccataccaat 500 || ||||| || || || || || ||||||||||| Sbjct: 589 aaaggcatgatccgacgtcgcacgtgccataccaat 554
>emb|BX813875.1|CNS0AEHT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB44ZH06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 931 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 259 gggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccatgttcttgtag 318 |||||||| |||||||| |||||||| | || ||||| || ||||||| ||||| ||| Sbjct: 757 gggtaccaaaacatgcctttgatgccttctggatcagcctcaaaccccaagttctgatag 698 Query: 319 aagtccaccactttactatctgcaaa 344 || ||||| |||| |||||||||||| Sbjct: 697 aaatccacaacttgactatctgcaaa 672 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 405 tttaccaagaccttgaccctgataggaaggatcaacgaggacgtcccagattgtagcatt 464 |||||| || |||||||||||||| ||||||||| || || ||||| ||||||||||| Sbjct: 611 tttacctagcccttgaccctgatattcaggatcaacaagaacatcccaaattgtagcatt 552 Query: 465 gaacgcatggtctgaagttgcccgcgccataccaat 500 || ||||| || || || || || ||||||||||| Sbjct: 551 aaaggcatgatccgacgtcgcacgtgccataccaat 516
>emb|BX818104.1|CNS0ACHM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL61ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 942 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 259 gggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccatgttcttgtag 318 |||||||| |||||||| |||||||| | || ||||| || ||||||| ||||| ||| Sbjct: 766 gggtaccaaaacatgcctttgatgccttctggatcagcctcaaaccccaagttctgatag 707 Query: 319 aagtccaccactttactatctgcaaa 344 || ||||| |||| |||||||||||| Sbjct: 706 aaatccacaacttgactatctgcaaa 681 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 405 tttaccaagaccttgaccctgataggaaggatcaacgaggacgtcccagattgtagcatt 464 |||||| || |||||||||||||| ||||||||| || || ||||| ||||||||||| Sbjct: 620 tttacctagcccttgaccctgatattcaggatcaacaagaacatcccaaattgtagcatt 561 Query: 465 gaacgcatggtctgaagttgcccgcgccataccaat 500 || ||||| || || || || || ||||||||||| Sbjct: 560 aaaggcatgatccgacgtcgcacgtgccataccaat 525
>gb|AY086183.1| Arabidopsis thaliana clone 22071 mRNA, complete sequence Length = 916 Score = 60.0 bits (30), Expect = 9e-06 Identities = 72/86 (83%) Strand = Plus / Minus Query: 259 gggtaccagaacatgcccttgatgccctgggggtcagcttcgaaccccatgttcttgtag 318 |||||||| |||||||| |||||||| | || ||||| || ||||||| ||||| ||| Sbjct: 783 gggtaccaaaacatgcctttgatgccttctggatcagcctcaaaccccaagttctgatag 724 Query: 319 aagtccaccactttactatctgcaaa 344 || ||||| |||| |||||||||||| Sbjct: 723 aaatccacaacttgactatctgcaaa 698 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 405 tttaccaagaccttgaccctgataggaaggatcaacgaggacgtcccagattgtagcatt 464 |||||| || |||||||||||||| ||||||||| || || ||||| ||||||||||| Sbjct: 637 tttacctagcccttgaccctgatattcaggatcaacaagaacatcccaaattgtagcatt 578 Query: 465 gaacgcatggtctgaagttgcccgcgccataccaat 500 || ||||| || || || || || ||||||||||| Sbjct: 577 aaaggcatgatccgacgtcgcacgtgccataccaat 542
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 262 taccagaacatgcccttgatgccctgggggtc 293 ||||||||||||||||||||||||| |||||| Sbjct: 2513377 taccagaacatgcccttgatgccctcggggtc 2513408
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 256 ctggggtaccagaacatgcccttgatgccctgggggtc 293 ||||| ||||| ||||||||||||||||||| |||||| Sbjct: 855272 ctgggataccaaaacatgcccttgatgccctcggggtc 855235
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 256 ctggggtaccagaacatgcccttgatgccctgggggtc 293 ||||| ||||| ||||||||||||||||||| |||||| Sbjct: 765596 ctgggataccaaaacatgcccttgatgccctcggggtc 765633
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 258 ggggtaccagaacatgcccttgatgccct 286 |||||||||||||||||||||||| |||| Sbjct: 2191267 ggggtaccagaacatgcccttgatcccct 2191239
>gb|AC158556.9| Mus musculus chromosome 15, clone RP23-140F20, complete sequence Length = 203053 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 508 ttcttctcttctccctctgtttc 530 ||||||||||||||||||||||| Sbjct: 173710 ttcttctcttctccctctgtttc 173688
>emb|AL050309.4|HSJ148M19 Human DNA sequence from clone RP1-148M19 on chromosome Xp11.22-11.3 Contains the 5' end of the KLF8 gene for Kruppel-like factor 8 and a ribosomal protein L23a (RPL23A) pseudogene, complete sequence Length = 177483 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 500 tcagttgcttcttctcttctccc 522 ||||||||||||||||||||||| Sbjct: 60683 tcagttgcttcttctcttctccc 60661
>gb|AC121589.3| Mus musculus BAC clone RP23-281G14 from chromosome 3, complete sequence Length = 215395 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 509 tcttctcttctccctctgtttc 530 |||||||||||||||||||||| Sbjct: 102199 tcttctcttctccctctgtttc 102178
>emb|AL445430.15| Human DNA sequence from clone RP11-716O23 on chromosome 6 Contains one or two novel genes, a repressor of protein-kinase (interferon-inducible double stranded RNA dependent inhibitor) (P58 repressor) (PRKRIR) pseudogene and a CpG island, complete sequence Length = 127862 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 396 catgagtgttttaccaagacct 417 |||||||||||||||||||||| Sbjct: 94165 catgagtgttttaccaagacct 94186
>gb|BC051414.1| Mus musculus U1 small nuclear ribonucleoprotein polypeptide A, mRNA (cDNA clone IMAGE:6493532), partial cds Length = 2866 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 512 tctcttctccctctgtttctga 533 |||||||||||||||||||||| Sbjct: 574 tctcttctccctctgtttctga 595
>gb|BC043938.1| Mus musculus U1 small nuclear ribonucleoprotein polypeptide A, mRNA (cDNA clone IMAGE:4503753) Length = 2953 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 512 tctcttctccctctgtttctga 533 |||||||||||||||||||||| Sbjct: 575 tctcttctccctctgtttctga 596
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 491 ccataccaatcagttgcttctt 512 |||||||||||||||||||||| Sbjct: 1191766 ccataccaatcagttgcttctt 1191745
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 166 ctgttatacaaagctcagctcctggc 191 ||||||||||||| |||||||||||| Sbjct: 356762 ctgttatacaaagttcagctcctggc 356787
>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence Length = 249504 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 512 tctcttctccctctgtttctga 533 |||||||||||||||||||||| Sbjct: 206764 tctcttctccctctgtttctga 206785
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 491 ccataccaatcagttgcttctt 512 |||||||||||||||||||||| Sbjct: 1191766 ccataccaatcagttgcttctt 1191745
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 491 ccataccaatcagttgcttctt 512 |||||||||||||||||||||| Sbjct: 101016 ccataccaatcagttgcttctt 101037
>gb|AC125670.4| Rattus norvegicus BAC CH230-113E22 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 103836 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 507 cttcttctcttctccctctgtttct 531 ||||||||||||||||||| ||||| Sbjct: 100480 cttcttctcttctccctctctttct 100456
>emb|AL158053.14| Human DNA sequence from clone RP11-156J23 on chromosome Xq21.2-21.33 Contains a discs, large homolog 7 (Drosophila) (DLG7) pseudogene, complete sequence Length = 177722 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 tcagttgcttcttctcttctc 520 ||||||||||||||||||||| Sbjct: 12204 tcagttgcttcttctcttctc 12184
>gb|AC018525.8| Homo sapiens chromosome 8, clone RP11-3J13, complete sequence Length = 150052 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 ttcttctcttctccctctgtt 528 ||||||||||||||||||||| Sbjct: 81891 ttcttctcttctccctctgtt 81911
>gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, complete sequence Length = 178736 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 508 ttcttctcttctccctctgtt 528 ||||||||||||||||||||| Sbjct: 165457 ttcttctcttctccctctgtt 165437
>gb|AC074309.4|AC074309 Arabidopsis thaliana chromosome 1 BAC T12O21 genomic sequence, complete sequence Length = 75298 Score = 42.1 bits (21), Expect = 2.1 Identities = 57/69 (82%) Strand = Plus / Minus Query: 432 aggatcaacgaggacgtcccagattgtagcattgaacgcatggtctgaagttgcccgcgc 491 ||||||||| || || ||||| ||||||||||| || ||||| || || || || || || Sbjct: 5622 aggatcaacaagaacatcccaaattgtagcattaaaggcatgatccgacgtcgcacgtgc 5563 Query: 492 cataccaat 500 ||||||||| Sbjct: 5562 cataccaat 5554
>gb|AC018891.9| Homo sapiens BAC clone RP11-498M11 from 2, complete sequence Length = 174074 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ctactactactagtagcagtt 103 ||||||||||||||||||||| Sbjct: 154346 ctactactactagtagcagtt 154326
>gb|AC010533.6|AC010533 Homo sapiens chromosome 16 clone RP11-229O3, complete sequence Length = 153588 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 tttacttttctactactacta 94 ||||||||||||||||||||| Sbjct: 12574 tttacttttctactactacta 12554
>gb|AC084464.1|AC084464 Caenorhabditis briggsae cosmid CB038P16, complete sequence Length = 99890 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 496 ccaatcagttgcttcttctct 516 ||||||||||||||||||||| Sbjct: 99707 ccaatcagttgcttcttctct 99727
>gb|AC084423.1|AC084423 Caenorhabditis briggsae cosmid CB020D11, complete sequence Length = 85565 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 496 ccaatcagttgcttcttctct 516 ||||||||||||||||||||| Sbjct: 17 ccaatcagttgcttcttctct 37
>gb|AC010140.3|AC010140 Homo sapiens BAC clone RP11-218E11 from Y, complete sequence Length = 148342 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 tcagttgcttcttctcttctc 520 ||||||||||||||||||||| Sbjct: 31743 tcagttgcttcttctcttctc 31723
>gb|AF191069.1|AF191069 Homo sapiens chromosome 21 clone P704-682K20 map 21q22.1, complete sequence Length = 108965 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 tcagttgcttcttctcttctc 520 ||||||||||||||||||||| Sbjct: 102280 tcagttgcttcttctcttctc 102300
>gb|AF096876.1|AF096876 Homo sapiens chromosome 21q22.1 PAC K09209, complete sequence Length = 109864 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 tcagttgcttcttctcttctc 520 ||||||||||||||||||||| Sbjct: 80405 tcagttgcttcttctcttctc 80425
>dbj|BS000177.1| Pan troglodytes chromosome 22 clone:PTB-118H03, map 22, complete sequences Length = 267172 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 tcagttgcttcttctcttctc 520 ||||||||||||||||||||| Sbjct: 171739 tcagttgcttcttctcttctc 171759
>gb|AY739307.1| Oryza sativa (japonica cultivar-group) adenosine 5'-phosphosulfate reductase-like (APRL4) mRNA, complete cds Length = 1166 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 504 ttgcttcttctcttctccctctgtttctg 532 ||||||||||||| || |||||||||||| Sbjct: 868 ttgcttcttctctacttcctctgtttctg 840
>gb|AC154870.4| Monodelphis domestica, clone XX-218A9, complete sequence Length = 133508 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 76 tacttttctactactactagtagcagtta 104 |||||| |||||||||||| ||||||||| Sbjct: 69017 tactttactactactactactagcagtta 68989
>dbj|AP001707.1| Homo sapiens genomic DNA, chromosome 21q, section 51/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 tcagttgcttcttctcttctc 520 ||||||||||||||||||||| Sbjct: 128873 tcagttgcttcttctcttctc 128893
>dbj|AP005354.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1159C3, complete sequence Length = 133276 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 ttcttctcttctccctctgtt 528 ||||||||||||||||||||| Sbjct: 34148 ttcttctcttctccctctgtt 34168
>gb|AC131083.8| Mus musculus chromosome 1, clone RP23-444L13, complete sequence Length = 182591 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 ttgcttcttctcttctccct 523 |||||||||||||||||||| Sbjct: 40913 ttgcttcttctcttctccct 40894
>ref|XM_638641.1| Dictyostelium discoideum putative Nek family protein kinase (DDB0220003), partial mRNA Length = 3372 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 1133 ctactactactagtagcagt 1152
>gb|AF074021.1| Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence Length = 103632 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gttgcttcttctcttctccc 522 |||||||||||||||||||| Sbjct: 18406 gttgcttcttctcttctccc 18387
>ref|XM_960812.1| Encephalitozoon cuniculi GB-M1 eukaryotic translation initiation factor 2 (ECU01_0700) partial mRNA Length = 1320 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 tgataggaaggatcaacgag 443 |||||||||||||||||||| Sbjct: 1121 tgataggaaggatcaacgag 1140
>gb|AF391985.1| Uncultured thermal soil bacterium clone YNPFFP2 16S ribosomal RNA gene, partial sequence Length = 1440 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 catgcccttgatgccctggg 289 |||||||||||||||||||| Sbjct: 1169 catgcccttgatgccctggg 1188
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 catgcccttgatgccctggg 289 |||||||||||||||||||| Sbjct: 2922928 catgcccttgatgccctggg 2922909
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 1104968 ctactactactagtagcagt 1104949
>gb|AC104866.10| Mus musculus chromosome 17, clone RP23-268C14, complete sequence Length = 176240 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 ctttacttttctactactactagt 96 |||| ||||||||||||||||||| Sbjct: 103008 cttttcttttctactactactagt 102985
>emb|AL732366.7| Human DNA sequence from clone RP11-393H10 on chromosome X Contains a novel gene (FLJ14503), the EIF1A gene for eukaryotic translation initiation factor 1A (EIF4C, EIF1AX, eIF-1A, eIF-4C), the 3' end of the RPS6KA3 gene for ribosomal protein S6 kinase, 90kDa, polypeptide 3 (RSK, HU-2, HU-3, RSK2, MRX19, ISPK-1, MAPKAPK1B), a novel gene and three CpG islands, complete sequence Length = 187275 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 cttcgaaccccatgttcttg 315 |||||||||||||||||||| Sbjct: 28634 cttcgaaccccatgttcttg 28653
>emb|AL928688.3| Human DNA sequence from clone RP11-77N10 on chromosome 10, complete sequence Length = 165910 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 cttcttctcttctccctctg 526 |||||||||||||||||||| Sbjct: 157069 cttcttctcttctccctctg 157050
>emb|AL603844.7| Human DNA sequence from clone RP11-541I21 on chromosome 1, complete sequence Length = 220185 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 cagttgcttcttctcttctc 520 |||||||||||||||||||| Sbjct: 20763 cagttgcttcttctcttctc 20744
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 catgcccttgatgccctggg 289 |||||||||||||||||||| Sbjct: 4479881 catgcccttgatgccctggg 4479862
>gb|AC101786.7| Mus musculus chromosome 1, clone RP24-146K19, complete sequence Length = 116889 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 ttgcttcttctcttctccct 523 |||||||||||||||||||| Sbjct: 100611 ttgcttcttctcttctccct 100592
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 catgcccttgatgccctggg 289 |||||||||||||||||||| Sbjct: 283178 catgcccttgatgccctggg 283159
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 tgataggaaggatcaacgag 443 |||||||||||||||||||| Sbjct: 87583 tgataggaaggatcaacgag 87602
>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12 Length = 199759 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gttgcttcttctcttctccc 522 |||||||||||||||||||| Sbjct: 179835 gttgcttcttctcttctccc 179816
>emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6 Length = 307150 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ctcctggcaatattcttctg 203 |||||||||||||||||||| Sbjct: 272729 ctcctggcaatattcttctg 272710
>emb|AJ006823.1|ECU6823 Encephalitozoon cuniculi ef2 gene Length = 1320 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 tgataggaaggatcaacgag 443 |||||||||||||||||||| Sbjct: 1121 tgataggaaggatcaacgag 1140
>gb|AC006484.2| Homo sapiens chromosome 5, clone hRPK.448_K_10, complete sequence Length = 156814 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 cttcttctcttctccctctg 526 |||||||||||||||||||| Sbjct: 150342 cttcttctcttctccctctg 150361
>emb|CR533571.9| Zebrafish DNA sequence from clone CH211-209O12 in linkage group 16, complete sequence Length = 218847 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 28047 ctactactactagtagcagt 28066
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 catgcccttgatgccctggg 289 |||||||||||||||||||| Sbjct: 4532676 catgcccttgatgccctggg 4532657
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 8672 ctactactactagtagcagt 8653
>gb|AC095054.3| Homo sapiens BAC clone RP11-354C17 from 4, complete sequence Length = 52664 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gttgcttcttctcttctccc 522 |||||||||||||||||||| Sbjct: 35848 gttgcttcttctcttctccc 35829
>gb|AC106825.2| Homo sapiens chromosome 5 clone RP11-83M24, complete sequence Length = 99304 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 500 tcagttgcttcttctcttctccct 523 |||| ||||||||||||||||||| Sbjct: 26825 tcagctgcttcttctcttctccct 26802
>gb|AC027627.6| Homo sapiens BAC clone RP11-376O6 from 4, complete sequence Length = 191665 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 cagttgcttcttctcttctc 520 |||||||||||||||||||| Sbjct: 25761 cagttgcttcttctcttctc 25742
>dbj|AK145694.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0030J08 product:unclassifiable, full insert sequence Length = 1266 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 tgcttcttctcttctccctc 524 |||||||||||||||||||| Sbjct: 1066 tgcttcttctcttctccctc 1085
>emb|BX248234.13| Zebrafish DNA sequence from clone DKEY-13E15 in linkage group 16, complete sequence Length = 220538 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 51461 ctactactactagtagcagt 51442
>gb|AC022601.6| Homo sapiens chromosome 18, clone RP11-138H11, complete sequence Length = 158885 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 ttcttctcttctccctctgt 527 |||||||||||||||||||| Sbjct: 117650 ttcttctcttctccctctgt 117631
>gb|AC008454.6| Homo sapiens chromosome 5 clone CTC-345M13, complete sequence Length = 135513 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 500 tcagttgcttcttctcttctccct 523 |||| ||||||||||||||||||| Sbjct: 111300 tcagctgcttcttctcttctccct 111277
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 17372696 ctactactactagtagcagt 17372715
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ttgcttcttctcttctccct 523 |||||||||||||||||||| Sbjct: 190461 ttgcttcttctcttctccct 190480
>gb|AC136940.2| Homo sapiens chromosome 5 clone RP11-1252I4, complete sequence Length = 184055 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 500 tcagttgcttcttctcttctccct 523 |||| ||||||||||||||||||| Sbjct: 129691 tcagctgcttcttctcttctccct 129714
>gb|AC106795.3| Homo sapiens chromosome 5 clone RP11-423H2, complete sequence Length = 177116 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 500 tcagttgcttcttctcttctccct 523 |||| ||||||||||||||||||| Sbjct: 69661 tcagctgcttcttctcttctccct 69684
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 1104966 ctactactactagtagcagt 1104947
>gb|AC138965.2| Homo sapiens chromosome 5 clone RP11-91H12, complete sequence Length = 170380 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 500 tcagttgcttcttctcttctccct 523 |||| ||||||||||||||||||| Sbjct: 127352 tcagctgcttcttctcttctccct 127375
>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence Length = 413138 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 363095 ctactactactagtagcagt 363114
>gb|AC037425.7|AC037425 Oryza sativa chromosome 10 BAC OSJNBa0055P24 genomic sequence, complete sequence Length = 134058 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 1691 ctactactactagtagcagt 1710
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11, complete sequence Length = 126827 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 125183 ctactactactagtagcagt 125164
>gb|AY648195.1| Helicobacter pylori isolate S831 adhesin (babA) gene, partial cds Length = 771 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 467 ctactactactagtagcagt 448
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 catgcccttgatgccctggg 289 |||||||||||||||||||| Sbjct: 1426761 catgcccttgatgccctggg 1426780
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ttgcttcttctcttctccct 523 |||||||||||||||||||| Sbjct: 25325 ttgcttcttctcttctccct 25344
>dbj|AK122009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111F13, full insert sequence Length = 3648 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ttgcttcttctcttctccct 523 |||||||||||||||||||| Sbjct: 410 ttgcttcttctcttctccct 429
>dbj|AK070517.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056A13, full insert sequence Length = 1131 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 830 ctactactactagtagcagt 849
>emb|AL935036.4| Human DNA sequence from clone RP11-257E20 on chromosome 10, complete sequence Length = 166004 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 cttcttctcttctccctctg 526 |||||||||||||||||||| Sbjct: 87506 cttcttctcttctccctctg 87487
>gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence Length = 99384 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 gttgcttcttctcttctccc 522 |||||||||||||||||||| Sbjct: 79489 gttgcttcttctcttctccc 79470
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 ctactactactagtagcagt 102 |||||||||||||||||||| Sbjct: 17381736 ctactactactagtagcagt 17381755
>emb|AL713991.13| Mouse DNA sequence from clone RP23-132C16 on chromosome 1, complete sequence Length = 210040 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 tcttctcttctccctctgtt 528 |||||||||||||||||||| Sbjct: 167642 tcttctcttctccctctgtt 167661
>gb|AC116708.19| Mus musculus chromosome 1, clone RP23-70F22, complete sequence Length = 214263 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 tgcttcttctcttctccctc 524 |||||||||||||||||||| Sbjct: 29467 tgcttcttctcttctccctc 29448 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,113,743 Number of Sequences: 3902068 Number of extensions: 5113743 Number of successful extensions: 96161 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95437 Number of HSP's gapped (non-prelim): 722 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)