ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal21b06 |
|---|---|
| Clone Library Name | barley_pub |
>SNAA_VITVI (P93798) Alpha-soluble NSF attachment protein (Alpha-SNAP)| (N-ethylmaleimide-sensitive factor attachment protein, alpha) Length = 289 Score = 60.5 bits (145), Expect = 4e-09 Identities = 29/48 (60%), Positives = 35/48 (72%) Frame = -1 Query: 318 MDDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELKKQXXXXXDLT 175 +D+ DV KFTDA+KEFD MT+LD WKTTLLLR K +K + DLT Sbjct: 242 VDEEDVVKFTDAVKEFDSMTQLDAWKTTLLLRVKEAIKAKELEEDDLT 289 Score = 35.4 bits (80), Expect(2) = 0.025 Identities = 15/16 (93%), Positives = 16/16 (100%) Frame = -2 Query: 530 QEIDPTFSGTREYKLL 483 QE+DPTFSGTREYKLL Sbjct: 220 QEMDPTFSGTREYKLL 235 Score = 21.6 bits (44), Expect(2) = 0.025 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 643 DTVAIQNSLXRYQ 605 D VAI N+L RYQ Sbjct: 208 DVVAITNALDRYQ 220
>SNAA_SOLTU (Q9M5P8) Alpha-soluble NSF attachment protein (Alpha-SNAP)| (N-ethylmaleimide-sensitive factor attachment protein, alpha) Length = 288 Score = 60.5 bits (145), Expect = 4e-09 Identities = 29/48 (60%), Positives = 36/48 (75%) Frame = -1 Query: 318 MDDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELKKQXXXXXDLT 175 +D+ DVAKFTDA+KE+D MT+LD W+TTLLLR K LK + DLT Sbjct: 241 IDEEDVAKFTDAVKEYDSMTQLDAWRTTLLLRVKETLKAKELEEDDLT 288 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -2 Query: 530 QEIDPTFSGTREYKLL 483 QE+DPTFSGTRE KLL Sbjct: 219 QELDPTFSGTRECKLL 234
>SNAA2_ARATH (Q9SPE6) Alpha-soluble NSF attachment protein 2 (Alpha-SNAP2)| (N-ethylmaleimide-sensitive factor attachment protein, alpha 2) Length = 289 Score = 59.7 bits (143), Expect = 7e-09 Identities = 28/48 (58%), Positives = 35/48 (72%) Frame = -1 Query: 318 MDDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELKKQXXXXXDLT 175 +D+ D+AKFTD +KEFD MT LD WKTT+LLR K +LK + DLT Sbjct: 242 IDEEDIAKFTDVVKEFDSMTPLDSWKTTMLLRVKEKLKAKELEEDDLT 289 Score = 30.4 bits (67), Expect = 4.7 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 563 IASFLKLFYHLQEIDPTFSGTREYKLLA 480 + S Q++DPTF+GTRE K LA Sbjct: 209 VVSITNALEKYQDLDPTFTGTRECKFLA 236
>SEC17_COPCI (P78603) Vesicular-fusion protein SEC17| Length = 285 Score = 44.3 bits (103), Expect = 3e-04 Identities = 18/40 (45%), Positives = 29/40 (72%) Frame = -1 Query: 318 MDDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELKKQ 199 +D GDV +T A+ EFD +T+LD WKT +LL+ K ++++ Sbjct: 242 VDAGDVGAYTAAVVEFDRITKLDNWKTAILLKIKRGIQEE 281
>SNAA_MOUSE (Q9DB05) Alpha-soluble NSF attachment protein (SNAP-alpha)| (N-ethylmaleimide-sensitive factor attachment protein, alpha) Length = 295 Score = 42.0 bits (97), Expect = 0.002 Identities = 16/37 (43%), Positives = 28/37 (75%) Frame = -1 Query: 315 DDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELK 205 ++ +V +T+A+KE+D ++RLD W TT+LLR K ++ Sbjct: 252 EEQNVDSYTEAVKEYDSISRLDQWLTTMLLRIKKTIQ 288
>SNAA_BOVIN (P81125) Alpha-soluble NSF attachment protein (SNAP-alpha)| (N-ethylmaleimide-sensitive factor attachment protein, alpha) Length = 295 Score = 42.0 bits (97), Expect = 0.002 Identities = 16/37 (43%), Positives = 28/37 (75%) Frame = -1 Query: 315 DDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELK 205 ++ +V +T+A+KE+D ++RLD W TT+LLR K ++ Sbjct: 252 EEQNVDSYTEAVKEYDSISRLDQWLTTMLLRIKKTIQ 288
>SNAB_MOUSE (P28663) Beta-soluble NSF attachment protein (SNAP-beta)| (N-ethylmaleimide-sensitive factor attachment protein, beta) (Brain protein I47) Length = 298 Score = 41.6 bits (96), Expect = 0.002 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = -1 Query: 294 FTDAIKEFDGMTRLDPWKTTLLLRAKNELK 205 +T+A+KEFD ++RLD W TT+LLR K ++ Sbjct: 259 YTEAVKEFDSISRLDQWLTTMLLRIKKSIQ 288
>SNAB_HUMAN (Q9H115) Beta-soluble NSF attachment protein (SNAP-beta)| (N-ethylmaleimide-sensitive factor attachment protein, beta) Length = 298 Score = 41.6 bits (96), Expect = 0.002 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = -1 Query: 294 FTDAIKEFDGMTRLDPWKTTLLLRAKNELK 205 +T+A+KEFD ++RLD W TT+LLR K ++ Sbjct: 259 YTEAVKEFDSISRLDQWLTTMLLRIKKSIQ 288
>SNAB_BOVIN (P81126) Beta-soluble NSF attachment protein (SNAP-beta)| (N-ethylmaleimide-sensitive factor attachment protein, beta) Length = 298 Score = 41.6 bits (96), Expect = 0.002 Identities = 16/30 (53%), Positives = 24/30 (80%) Frame = -1 Query: 294 FTDAIKEFDGMTRLDPWKTTLLLRAKNELK 205 +T+A+KEFD ++RLD W TT+LLR K ++ Sbjct: 259 YTEAVKEFDSISRLDQWLTTMLLRIKKSIQ 288
>SNAP_DROME (Q23983) Soluble NSF attachment protein (SNAP)| (N-ethylmaleimide-sensitive factor attachment protein) Length = 292 Score = 41.2 bits (95), Expect = 0.003 Identities = 15/34 (44%), Positives = 27/34 (79%) Frame = -1 Query: 318 MDDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAK 217 +++ ++ FT+A+K++D ++RLD W TT+LLR K Sbjct: 249 LEEQNIEGFTEAVKDYDSISRLDQWYTTILLRIK 282
>SEC17_ASHGO (Q75D68) Vesicular-fusion protein SEC17| Length = 291 Score = 40.8 bits (94), Expect = 0.003 Identities = 17/34 (50%), Positives = 24/34 (70%) Frame = -1 Query: 309 GDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNEL 208 GDV F++ + EFD ++LD WKTT+LLR K + Sbjct: 250 GDVEAFSNHVFEFDKFSKLDKWKTTVLLRVKTSI 283
>SNAA_RAT (P54921) Alpha-soluble NSF attachment protein (SNAP-alpha)| (N-ethylmaleimide-sensitive factor attachment protein, alpha) Length = 295 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = -1 Query: 315 DDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELK 205 ++ +V +T+++KE+D ++RLD W TT+LLR K ++ Sbjct: 252 EEQNVDSYTESVKEYDSISRLDQWLTTMLLRIKKTIQ 288
>SNAA_HUMAN (P54920) Alpha-soluble NSF attachment protein (SNAP-alpha)| (N-ethylmaleimide-sensitive factor attachment protein, alpha) Length = 295 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = -1 Query: 315 DDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELK 205 ++ +V +T+++KE+D ++RLD W TT+LLR K ++ Sbjct: 252 EEQNVDSYTESVKEYDSISRLDQWLTTMLLRIKKTIQ 288
>SEC17_YEAST (P32602) Alpha-soluble NSF attachment protein (SNAP-alpha)| (N-ethylmaleimide-sensitive factor attachment protein, alpha) (Vesicular-fusion protein SEC17) (alpha-SNAP chaperone) Length = 291 Score = 38.1 bits (87), Expect = 0.022 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = -1 Query: 318 MDDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELKKQ 199 +++GD + ++ KEFD RLD WK T+L + K +++Q Sbjct: 247 VNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQ 286
>SEC17_SCHPO (Q9P4X4) Probable vesicular-fusion protein sec17 homolog| Length = 289 Score = 36.2 bits (82), Expect = 0.085 Identities = 13/39 (33%), Positives = 26/39 (66%) Frame = -1 Query: 318 MDDGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELKK 202 ++ D F D + +D +++LD WKTT+LL+ K+ +++ Sbjct: 245 IEASDANMFADKVFTYDQLSKLDSWKTTILLKIKSSIQE 283 Score = 30.4 bits (67), Expect = 4.7 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -2 Query: 536 HLQEIDPTFSGTREYKLL 483 H EIDP+F+ TREY+LL Sbjct: 221 HFLEIDPSFASTREYQLL 238
>SEC17_NEUCR (Q9P6A5) Probable vesicular-fusion protein sec17 homolog| Length = 292 Score = 33.9 bits (76), Expect = 0.42 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = -1 Query: 312 DGDVAKFTDAIKEFDGMTRLDPWKTTLLLRAKNELKK 202 + ++ F D + +D M+RLD WK +LL+ KN ++ Sbjct: 250 NNNLEMFQDKLAAYDKMSRLDDWKAAVLLQIKNNFEE 286
>SNAA1_ARATH (Q9LXZ5) Alpha-soluble NSF attachment protein 1 (Alpha-SNAP1)| (N-ethylmaleimide-sensitive factor attachment protein, alpha 1) Length = 381 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -2 Query: 563 IASFLKLFYHLQEIDPTFSGTREYKLLA 480 + S Q++DPTFSGTRE K LA Sbjct: 260 VVSITNALEKYQDLDPTFSGTRECKFLA 287 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,994,010 Number of Sequences: 219361 Number of extensions: 1573325 Number of successful extensions: 4086 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 4001 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4086 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
