ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20l24 |
|---|---|
| Clone Library Name | barley_pub |
>RPE_SPIOL (Q43157) Ribulose-phosphate 3-epimerase, chloroplast precursor (EC| 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) Length = 285 Score = 59.3 bits (142), Expect = 2e-09 Identities = 29/30 (96%), Positives = 29/30 (96%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTSKRP 189 GANALVAGSAVFGAKDYAEAIKGIK SKRP Sbjct: 251 GANALVAGSAVFGAKDYAEAIKGIKASKRP 280
>RPE_SOLTU (Q43843) Ribulose-phosphate 3-epimerase, chloroplast precursor (EC| 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) (Fragment) Length = 280 Score = 58.9 bits (141), Expect = 3e-09 Identities = 29/30 (96%), Positives = 29/30 (96%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTSKRP 189 GANALVAGSAVFGA DYAEAIKGIKTSKRP Sbjct: 246 GANALVAGSAVFGAPDYAEAIKGIKTSKRP 275
>RPE_ORYSA (Q9ZTP5) Ribulose-phosphate 3-epimerase, chloroplast precursor (EC| 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) Length = 274 Score = 58.2 bits (139), Expect = 5e-09 Identities = 28/30 (93%), Positives = 29/30 (96%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTSKRP 189 GANA+VAGSAVFGA DYAEAIKGIKTSKRP Sbjct: 240 GANAIVAGSAVFGAPDYAEAIKGIKTSKRP 269
>RPE_SYNY3 (P74061) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 229 Score = 48.1 bits (113), Expect = 6e-06 Identities = 22/30 (73%), Positives = 26/30 (86%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTSKRP 189 GANA+VAGSAVF A +YAEAI G++ SKRP Sbjct: 193 GANAIVAGSAVFNAPNYAEAIAGVRNSKRP 222
>RPE_STRCO (Q9L0Z5) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 228 Score = 35.4 bits (80), Expect = 0.038 Identities = 15/26 (57%), Positives = 21/26 (80%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKT 201 GA+ VAGSAV+GA D AEA++ ++T Sbjct: 188 GADVFVAGSAVYGASDPAEAVRALRT 213
>RPE_BACSU (O34557) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 217 Score = 33.9 bits (76), Expect = 0.11 Identities = 17/28 (60%), Positives = 20/28 (71%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTSK 195 GAN LVAGSAV+G D +AI I+ SK Sbjct: 190 GANLLVAGSAVYGQSDRKKAISEIRGSK 217
>RPE_HAEIN (P44756) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 224 Score = 32.0 bits (71), Expect = 0.42 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKT 201 GA+ VAGSA+FG DY + I I+T Sbjct: 192 GADMFVAGSAIFGKPDYKQVIDQIRT 217
>RPE1_ORYSA (Q9SE42) Ribulose-phosphate 3-epimerase, cytoplasmic isoform (EC| 5.1.3.1) (Ribulose-5-phosphate-epimerase) (Cyt-RPEase) (RPEcyt) (Pentose-5-phosphate 3-epimerase) (PPE) Length = 228 Score = 31.6 bits (70), Expect = 0.55 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTS 198 GAN +VAGS++FGA + E I ++ S Sbjct: 194 GANCIVAGSSIFGAAEPGEVISALRKS 220
>RPE_SCHPO (O14105) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) Length = 228 Score = 31.2 bits (69), Expect = 0.72 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTS 198 GAN +VAG+AVF A+ E I G++ S Sbjct: 190 GANVIVAGTAVFHAQSPEEVISGLRNS 216
>CYA1_DROME (P32870) Ca(2+)/calmodulin-responsive adenylate cyclase (EC 4.6.1.1)| (ATP pyrophosphate-lyase) (Protein rutabaga) Length = 2248 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -3 Query: 83 SLSSHTLYHRDHHHQIGNKRQQRNN 9 S H YH HHHQ ++QQR N Sbjct: 1946 SQQRHQRYHHHHHHQQRQQQQQRYN 1970
>RPEP_RALEU (Q04539) Ribulose-phosphate 3-epimerase, plasmid (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 241 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/24 (58%), Positives = 16/24 (66%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGI 207 GA+ VAGSAVFGA D +GI Sbjct: 207 GADTFVAGSAVFGAPDADGGYRGI 230
>RPE_METJA (Q58093) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 234 Score = 28.9 bits (63), Expect = 3.6 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIK 204 GA+ LVA SA+FG D A+K ++ Sbjct: 187 GADVLVAASAIFGKDDVKTAVKNLR 211
>RPE_ASHGO (Q755M2) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) Length = 239 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTSKR 192 GAN +VAG++VF A D + I +K + R Sbjct: 198 GANVIVAGTSVFAAADQKDVISYMKDNVR 226
>RPE_BUCAP (Q8K940) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 228 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIK 204 GAN V GS +FG DY IK I+ Sbjct: 192 GANVFVIGSGIFGYTDYNVIIKKIR 216
>SLIT1_HUMAN (O75093) Slit homolog 1 protein precursor (Slit-1) (Multiple| epidermal growth factor-like domains 4) Length = 1534 Score = 28.1 bits (61), Expect = 6.1 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 Query: 145 LCNISSFLFYHCRGLRCIGAFHCQA 71 LCN + L CRGL+C+ HCQA Sbjct: 1411 LCNQAGALAEPCRGLQCLHG-HCQA 1434
>RPE_CANGA (Q6FL81) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) Length = 246 Score = 28.1 bits (61), Expect = 6.1 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIKTSKR 192 GAN +VAG++VF A D E I +K R Sbjct: 203 GANVIVAGTSVFTASDPHEVISFMKEEVR 231
>RPE_MYCTU (P65760) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 229 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIK 204 G + VAGSAV+GA D A A+ ++ Sbjct: 193 GVDCFVAGSAVYGADDPAAAVAALR 217
>RPE_MYCBO (P65761) Ribulose-phosphate 3-epimerase (EC 5.1.3.1)| (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E) Length = 229 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = -3 Query: 278 GANALVAGSAVFGAKDYAEAIKGIK 204 G + VAGSAV+GA D A A+ ++ Sbjct: 193 GVDCFVAGSAVYGADDPAAAVAALR 217
>PTV3B_ECOLI (P08722) PTS system beta-glucoside-specific EIIBCA component| (EIIBCA-Bgl) (EII-Bgl) [Includes: Beta-glucoside-specific phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system beta-glucoside-specific EIIB component); Beta-glucoside p Length = 625 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +1 Query: 73 LDSERHLCNANHDNGKTKKRRCYTV*HAYTPVLHAATATGLLLVLIPL 216 LD + N D G R Y + +TP++ ATG+L ++ L Sbjct: 80 LDEKAQQAPENDDKGNLLNRFVYVISGIFTPLIGLMAATGILKGMLAL 127
>ATKA_MYCTU (P65209) Potassium-transporting ATPase A chain (EC 3.6.3.12)| (Potassium-translocating ATPase A chain) (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) Length = 571 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 154 AYTPVLHAATATGLLLVLIPLIASA*SLAPKTAEPATRAFAP 279 +Y + A G ++IP++A A SLA K P T A P Sbjct: 492 SYDTTIGVAMLIGRFFLIIPVLAIAGSLARKGTTPVTAATFP 533
>ATKA_MYCBO (P65210) Potassium-transporting ATPase A chain (EC 3.6.3.12)| (Potassium-translocating ATPase A chain) (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) Length = 571 Score = 27.7 bits (60), Expect = 7.9 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +1 Query: 154 AYTPVLHAATATGLLLVLIPLIASA*SLAPKTAEPATRAFAP 279 +Y + A G ++IP++A A SLA K P T A P Sbjct: 492 SYDTTIGVAMLIGRFFLIIPVLAIAGSLARKGTTPVTAATFP 533 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,202,884 Number of Sequences: 219361 Number of extensions: 471635 Number of successful extensions: 1322 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1292 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1316 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
