ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20j22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF024589.1| X Tritordeum sp. glycine decarboxylase P subunit ... 178 2e-42
2emb|AJ635205.1| Triticum durum ssp. durum partial mRNA for putat... 167 9e-39
3gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA,... 143 1e-31
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 62 4e-07
5dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic D... 62 4e-07
6dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic D... 62 4e-07
7dbj|AK111968.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 4e-07
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
9dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
10dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.006
11dbj|AK111934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
12dbj|AK111644.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.006
13gb|AY103920.1| Zea mays PCO082698 mRNA sequence 48 0.006
14emb|Z84572.1|HS49J10 Human DNA sequence from clone RP1-49J10 on ... 44 0.089
15emb|AL354713.7| Human DNA sequence from clone RP11-498A13 on chr... 44 0.089
16emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chr... 44 0.089
17emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chrom... 44 0.089
18gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome... 42 0.35
19gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome... 42 0.35
20gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, com... 40 1.4
21gb|BC013090.1| Homo sapiens guanine nucleotide binding protein (... 40 1.4
22ref|NM_018841.3| Homo sapiens guanine nucleotide binding protein... 40 1.4
23emb|CR859714.1| Pongo pygmaeus mRNA; cDNA DKFZp469I056 (from clo... 40 1.4
24emb|CR858588.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2016 (from cl... 40 1.4
25emb|AL832431.1|HSM803739 Homo sapiens mRNA; cDNA DKFZp762E193 (f... 40 1.4
26emb|AL049367.1|HSM800152 Homo sapiens mRNA; cDNA DKFZp586B0918 (... 40 1.4
27dbj|AK092014.1| Homo sapiens cDNA FLJ34695 fis, clone MESAN2002086 40 1.4
28dbj|AK055914.1| Homo sapiens cDNA FLJ31352 fis, clone MESAN2000238 40 1.4
29emb|CR593144.1| full-length cDNA clone CS0DB001YO17 of Neuroblas... 40 1.4
30emb|AL136120.8| Human DNA sequence from clone RP5-975D15 on chro... 40 1.4
31emb|Z77666.1|CEK08E7 Caenorhabditis elegans Cosmid K08E7, comple... 40 1.4
32gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, com... 40 1.4
33gb|AC156992.13| Mus musculus chromosome 7, clone RP23-474C17, co... 38 5.5
34emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chr... 38 5.5
35emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on ch... 38 5.5
36gb|AC106045.5| Homo sapiens BAC clone RP11-29H20 from 4, complet... 38 5.5
37gb|AC155842.4| Mus musculus 6 BAC RP24-122N23 (Roswell Park Canc... 38 5.5
38emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 i... 38 5.5
39emb|CT025608.12| Mouse DNA sequence from clone RP23-292F17 on ch... 38 5.5
40emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chro... 38 5.5 
>gb|AF024589.1| X Tritordeum sp. glycine decarboxylase P subunit mRNA, complete cds
          Length = 3487

 Score =  178 bits (90), Expect = 2e-42
 Identities = 103/108 (95%)
 Strand = Plus / Minus

                                                                        
Query: 2    gggggtncagaggatacaggagaaggtggcatctgaagagaatntatacagtacatgagg 61
            |||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct: 3321 gggggtacagaggatacaggagaaggtggcatttgaggagaatatatacagtacatgagg 3262

                                                            
Query: 62   gatttagaagcaagcatgcttccctcctacaggaagcatcataacttc 109
            ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 3261 gatttagaagcaagcatgcttccctcctacaggaagcatgataacttc 3214
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>emb|AJ635205.1| Triticum durum ssp. durum partial mRNA for putative glycine
           decarboxylase P subunit (gly1 gene)
          Length = 297

 Score =  167 bits (84), Expect = 9e-39
 Identities = 95/99 (95%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaggatacaggagaaggtggcatctgaagagaatntatacagtacatgagggatttagaa 70
           ||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct: 296 gaggatacaggagaaggtggcatttgaggagaatatatacagtacatgagggatttagaa 237

                                                  
Query: 71  gcaagcatgcttccctcctacaggaagcatcataacttc 109
           |||||||||||||||||||||||||||||| ||||||||
Sbjct: 236 gcaagcatgcttccctcctacaggaagcatgataacttc 198
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>gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA, complete cds
          Length = 3408

 Score =  143 bits (72), Expect = 1e-31
 Identities = 95/103 (92%)
 Strand = Plus / Minus

                                                                        
Query: 14   gatacaggagaaggtggcatctgaagagaatntatacagtacatgagggatttagaagca 73
            ||||||||||| |||||||||||| |||||| ||||||||||||||| |||| |||||||
Sbjct: 3306 gatacaggagagggtggcatctgaggagaatatatacagtacatgagagattgagaagca 3247

                                                       
Query: 74   agcatgcttccctcctacaggaagcatcataacttcttgacac 116
            |||||||||||||||||||||||||||  ||||||||| ||||
Sbjct: 3246 agcatgcttccctcctacaggaagcattgtaacttctttacac 3204
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 74       agcatgcttccctcctacaggaagcatcataacttcttg 112
                ||||||||||||||||||||||||||| || ||||||||
Sbjct: 29559699 agcatgcttccctcctacaggaagcattatgacttcttg 29559661



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                           
Query: 16       tacaggagaaggtggcatctgaagaga 42
                ||||||||||||||||| |||| ||||
Sbjct: 29559787 tacaggagaaggtggcagctgaggaga 29559761
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>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1142C05
          Length = 151457

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 74    agcatgcttccctcctacaggaagcatcataacttcttg 112
             ||||||||||||||||||||||||||| || ||||||||
Sbjct: 29519 agcatgcttccctcctacaggaagcattatgacttcttg 29481



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 16    tacaggagaaggtggcatctgaagaga 42
             ||||||||||||||||| |||| ||||
Sbjct: 29607 tacaggagaaggtggcagctgaggaga 29581
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>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456F08
          Length = 156850

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 74     agcatgcttccctcctacaggaagcatcataacttcttg 112
              ||||||||||||||||||||||||||| || ||||||||
Sbjct: 125973 agcatgcttccctcctacaggaagcattatgacttcttg 125935



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 16     tacaggagaaggtggcatctgaagaga 42
              ||||||||||||||||| |||| ||||
Sbjct: 126061 tacaggagaaggtggcagctgaggaga 126035
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>dbj|AK111968.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B09, full
            insert sequence
          Length = 1194

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 74   agcatgcttccctcctacaggaagcatcataacttcttg 112
            ||||||||||||||||||||||||||| || ||||||||
Sbjct: 1051 agcatgcttccctcctacaggaagcattatgacttcttg 1013



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 16   tacaggagaaggtggcatctgaagaga 42
            ||||||||||||||||| |||| ||||
Sbjct: 1139 tacaggagaaggtggcagctgaggaga 1113
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 77       atgcttccctcctacaggaagcat 100
                ||||||||||||||||||||||||
Sbjct: 24016130 atgcttccctcctacaggaagcat 24016153



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                           
Query: 16       tacaggagaaggtggcatctgaagaga 42
                ||||||||||||||||| |||| ||||
Sbjct: 24016044 tacaggagaaggtggcagctgaggaga 24016070
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>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0490F09
          Length = 149542

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 77     atgcttccctcctacaggaagcat 100
              ||||||||||||||||||||||||
Sbjct: 145741 atgcttccctcctacaggaagcat 145764



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 16     tacaggagaaggtggcatctgaagaga 42
              ||||||||||||||||| |||| ||||
Sbjct: 145655 tacaggagaaggtggcagctgaggaga 145681
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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0429G06
          Length = 158321

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 77    atgcttccctcctacaggaagcat 100
             ||||||||||||||||||||||||
Sbjct: 25823 atgcttccctcctacaggaagcat 25846



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 16    tacaggagaaggtggcatctgaagaga 42
             ||||||||||||||||| |||| ||||
Sbjct: 25737 tacaggagaaggtggcagctgaggaga 25763
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>dbj|AK111934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E12, full
           insert sequence
          Length = 823

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 77  atgcttccctcctacaggaagcat 100
           ||||||||||||||||||||||||
Sbjct: 670 atgcttccctcctacaggaagcat 647



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 16  tacaggagaaggtggcatctgaagaga 42
           ||||||||||||||||| |||| ||||
Sbjct: 756 tacaggagaaggtggcagctgaggaga 730
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>dbj|AK111644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F05, full
            insert sequence
          Length = 1836

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 77   atgcttccctcctacaggaagcat 100
            ||||||||||||||||||||||||
Sbjct: 1600 atgcttccctcctacaggaagcat 1577



 Score = 38.2 bits (19), Expect = 5.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 16   tacaggagaaggtggcatctgaagaga 42
            ||||||||||||||||| |||| ||||
Sbjct: 1686 tacaggagaaggtggcagctgaggaga 1660
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>gb|AY103920.1| Zea mays PCO082698 mRNA sequence
          Length = 2092

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 77   atgcttccctcctacaggaagcat 100
            ||||||||||||||||||||||||
Sbjct: 1845 atgcttccctcctacaggaagcat 1822
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>emb|Z84572.1|HS49J10 Human DNA sequence from clone RP1-49J10 on chromosome 13 Contains the
             3' end of the gene for androgen-induced prostate
             proliferative shutoff associated protein (AS3) (CG008,
             FLJ23236, KIAA0979), complete sequence
          Length = 137246

 Score = 44.1 bits (22), Expect = 0.089
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 11    gaggatacaggagaaggtggcatctg 36
             ||||| ||||||||||||||||||||
Sbjct: 19260 gaggacacaggagaaggtggcatctg 19235
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>emb|AL354713.7| Human DNA sequence from clone RP11-498A13 on chromosome 1 Contains a
             processed pseudogene for nuclear receptor binding factor 2
             (NRBF2), a processed pseudogene similar to part of
             olfactory receptor, family 11, subfamily H, member 6
             (OR11H6) and the 5' end of the CD53 gene for CD53 antigen,
             complete sequence
          Length = 138370

 Score = 44.1 bits (22), Expect = 0.089
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 11    gaggatacaggagaaggtggca 32
             ||||||||||||||||||||||
Sbjct: 18625 gaggatacaggagaaggtggca 18604
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>emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chromosome 13 Contains the
             3' end of the KIAA0979 gene and part of a novel gene,
             complete sequence
          Length = 168487

 Score = 44.1 bits (22), Expect = 0.089
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 11    gaggatacaggagaaggtggcatctg 36
             ||||| ||||||||||||||||||||
Sbjct: 18746 gaggacacaggagaaggtggcatctg 18721
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>emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chromosome 1q24.3-25.3,
             complete sequence
          Length = 119853

 Score = 44.1 bits (22), Expect = 0.089
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 11    gaggatacaggagaaggtggca 32
             ||||||||||||||||||||||
Sbjct: 54567 gaggatacaggagaaggtggca 54546
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>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence
          Length = 160517

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 65    ttagaagcaagcatgcttccctcct 89
             ||||||||| |||||||||||||||
Sbjct: 56383 ttagaagcatgcatgcttccctcct 56407
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>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence
          Length = 245443

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 65     ttagaagcaagcatgcttccctcct 89
              ||||||||| |||||||||||||||
Sbjct: 125962 ttagaagcatgcatgcttccctcct 125986
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>gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, complete sequence
          Length = 167586

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     agaagcaagcatgcttccct 86
              ||||||||||||||||||||
Sbjct: 146573 agaagcaagcatgcttccct 146554
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>gb|BC013090.1| Homo sapiens guanine nucleotide binding protein (G protein), gamma
            12, mRNA (cDNA clone IMAGE:3857807), partial cds
          Length = 2836

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   gagaaggtggcatctgaagagaat 44
            ||||||||||||| ||||||||||
Sbjct: 1997 gagaaggtggcatttgaagagaat 1974
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>ref|NM_018841.3| Homo sapiens guanine nucleotide binding protein (G protein), gamma 12
            (GNG12), mRNA
          Length = 4399

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   gagaaggtggcatctgaagagaat 44
            ||||||||||||| ||||||||||
Sbjct: 3463 gagaaggtggcatttgaagagaat 3440
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>emb|CR859714.1| Pongo pygmaeus mRNA; cDNA DKFZp469I056 (from clone DKFZp469I056)
          Length = 4466

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   gagaaggtggcatctgaagagaat 44
            ||||||||||||| ||||||||||
Sbjct: 3556 gagaaggtggcatttgaagagaat 3533
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>emb|CR858588.1| Pongo pygmaeus mRNA; cDNA DKFZp469E2016 (from clone DKFZp469E2016)
          Length = 4276

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   gagaaggtggcatctgaagagaat 44
            ||||||||||||| ||||||||||
Sbjct: 3431 gagaaggtggcatttgaagagaat 3408
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>emb|AL832431.1|HSM803739 Homo sapiens mRNA; cDNA DKFZp762E193 (from clone DKFZp762E193)
          Length = 4399

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   gagaaggtggcatctgaagagaat 44
            ||||||||||||| ||||||||||
Sbjct: 3463 gagaaggtggcatttgaagagaat 3440
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>emb|AL049367.1|HSM800152 Homo sapiens mRNA; cDNA DKFZp586B0918 (from clone DKFZp586B0918)
          Length = 2352

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   gagaaggtggcatctgaagagaat 44
            ||||||||||||| ||||||||||
Sbjct: 1495 gagaaggtggcatttgaagagaat 1472
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>dbj|AK092014.1| Homo sapiens cDNA FLJ34695 fis, clone MESAN2002086
          Length = 3520

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   gagaaggtggcatctgaagagaat 44
            ||||||||||||| ||||||||||
Sbjct: 2696 gagaaggtggcatttgaagagaat 2673
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>dbj|AK055914.1| Homo sapiens cDNA FLJ31352 fis, clone MESAN2000238
          Length = 2841

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   gagaaggtggcatctgaagagaat 44
            ||||||||||||| ||||||||||
Sbjct: 2014 gagaaggtggcatttgaagagaat 1991
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>emb|CR593144.1| full-length cDNA clone CS0DB001YO17 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 927

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 21  gagaaggtggcatctgaagagaat 44
           ||||||||||||| ||||||||||
Sbjct: 103 gagaaggtggcatttgaagagaat 80
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>emb|AL136120.8| Human DNA sequence from clone RP5-975D15 on chromosome 1p31.3-32.2
             Contains the GADD45A gene for growth arrest and
             DNA-damage-inducible alpha, the 3' end of the GNG12 gene
             for guanine nucleotide binding protein (G protein) gamma
             12 and a CpG island, complete sequence
          Length = 104198

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    gagaaggtggcatctgaagagaat 44
             ||||||||||||| ||||||||||
Sbjct: 31979 gagaaggtggcatttgaagagaat 32002
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>emb|Z77666.1|CEK08E7 Caenorhabditis elegans Cosmid K08E7, complete sequence
          Length = 38464

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    gaagcatcataacttcttga 113
             ||||||||||||||||||||
Sbjct: 29884 gaagcatcataacttcttga 29903
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>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence
          Length = 179805

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    agaagcaagcatgcttccct 86
             ||||||||||||||||||||
Sbjct: 31467 agaagcaagcatgcttccct 31448
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>gb|AC156992.13| Mus musculus chromosome 7, clone RP23-474C17, complete sequence
          Length = 178169

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     agcaagcatgcttccctcc 88
              |||||||||||||||||||
Sbjct: 143117 agcaagcatgcttccctcc 143099
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>emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chromosome 17, complete
              sequence
          Length = 207434

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     aggatacaggagaaggtgg 30
              |||||||||||||||||||
Sbjct: 177209 aggatacaggagaaggtgg 177191
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>emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on chromosome 9 Contains the
             5' end of the PAX5 gene for paired box gene 5 (B-cell
             lineage specific activator protein) (BSAP), a ribosomal
             protein L32 (RPL32) pseudogene and five CpG islands,
             complete sequence
          Length = 159096

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    aggagaaggtggcatctga 37
             |||||||||||||||||||
Sbjct: 77172 aggagaaggtggcatctga 77190
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>gb|AC106045.5| Homo sapiens BAC clone RP11-29H20 from 4, complete sequence
          Length = 183003

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 74     agcatgcttccctcctaca 92
              |||||||||||||||||||
Sbjct: 104157 agcatgcttccctcctaca 104139
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>gb|AC155842.4| Mus musculus 6 BAC RP24-122N23 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 177409

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 57    tgagggatttagaagcaag 75
             |||||||||||||||||||
Sbjct: 36136 tgagggatttagaagcaag 36154
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>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19,
              complete sequence
          Length = 182182

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     atcataacttcttgacaca 117
              |||||||||||||||||||
Sbjct: 124550 atcataacttcttgacaca 124532
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>emb|CT025608.12| Mouse DNA sequence from clone RP23-292F17 on chromosome 9, complete
             sequence
          Length = 200204

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   cataacttcttgacacagt 119
             |||||||||||||||||||
Sbjct: 66260 cataacttcttgacacagt 66242
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>emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chromosome 2, complete
              sequence
          Length = 195840

 Score = 38.2 bits (19), Expect = 5.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     gcttccctcctacaggaag 97
              |||||||||||||||||||
Sbjct: 184017 gcttccctcctacaggaag 183999


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 953,608
Number of Sequences: 3902068
Number of extensions: 953608
Number of successful extensions: 59510
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59405
Number of HSP's gapped (non-prelim): 105
length of query: 119
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 98
effective length of database: 17,151,101,840
effective search space: 1680807980320
effective search space used: 1680807980320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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