ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20j20 |
|---|---|
| Clone Library Name | barley_pub |
>SPKD_SYNY3 (P54735) Serine/threonine-protein kinase D (EC 2.7.11.1)| Length = 505 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -1 Query: 349 VPVTWNXRSGSQRQRGYL-QNYCTDPYMVVTNSCGSQGAYGYWVCPLGDGSTGYL 188 +P + N RSG G + Q Y + ++ +S S G Y V G GSTG++ Sbjct: 444 IPGSKNIRSGPGTDYGVITQGYTGEGLDILDSSTDSSGHVWYKVYHYGSGSTGWI 498
>NUDH_WOLPM (P61787) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 162 Score = 29.3 bits (64), Expect = 2.4 Identities = 10/34 (29%), Positives = 18/34 (52%) Frame = -1 Query: 349 VPVTWNXRSGSQRQRGYLQNYCTDPYMVVTNSCG 248 +P+ WN + Q+QR +L +C + + N G Sbjct: 84 IPICWNGKYSGQKQRWFLMKFCGEDEDIDINYTG 117
>ZN318_MOUSE (Q99PP2) Zinc finger protein 318 (Testicular zinc finger protein)| Length = 2025 Score = 28.1 bits (61), Expect = 5.4 Identities = 21/66 (31%), Positives = 27/66 (40%) Frame = +1 Query: 154 YPINMPPSKPVEDTLCYHLPADTPSNHRLPGCHRS**RPCTDQCSNSVDNLFVVVTLTXC 333 YP + PPS P+ D HRL P T Q + S NL V+ T+T Sbjct: 616 YPASQPPSHPLSDP------------HRL--------LPVTKQAARSRPNLRVIPTVTPA 655 Query: 334 SK*QEL 351 QE+ Sbjct: 656 KPKQEI 661
>Y2756_YERPE (Q8ZD36) UPF0209 protein YPO2756/y1590/YP2407| Length = 689 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -3 Query: 206 W*HRVSSTGLDG-GILIG*VFSHLYLLATSRRGVMFTMY 93 W HR ++T D I+ G + S L LA RRG + T+Y Sbjct: 255 WYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLY 293
>Y2627_YERPS (Q668W0) UPF0209 protein YPTB2627| Length = 689 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Frame = -3 Query: 206 W*HRVSSTGLDG-GILIG*VFSHLYLLATSRRGVMFTMY 93 W HR ++T D I+ G + S L LA RRG + T+Y Sbjct: 255 WYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLY 293
>Y309_ENCCU (Q8SW78) Hypothetical protein ECU03_0090| Length = 622 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 252 VAAREPMVTGCVRWEMVAQGIFDRFGWRHINRIGV 148 V+ M G RW+MV GIF+ G + + ++ V Sbjct: 490 VSTNRYMKDGTERWKMVGVGIFEEGGEKKVGKVEV 524
>EXUT_BACSU (O34456) Hexuronate transporter| Length = 422 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 119 RRGVMFTMYLFFRFSYTLYCLNTMFA*YMV 30 ++ V+FT + FF ++Y L+ T F Y+V Sbjct: 215 QKTVLFTAFAFFAYNYILFFFLTWFPSYLV 244
>ACON_BRAJA (P70920) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)| (Aconitase) Length = 906 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%) Frame = -1 Query: 292 NYCTDPYMVVTNSCGSQGAYGYWVCPLGDGSTG---YLRPVW 176 NY P +VV ++ V PLG+G G YL+ +W Sbjct: 555 NYLASPPLVVAHALAGSVTKNLAVEPLGEGKDGKPVYLKDIW 596
>OPSD_ANOCA (P41591) Rhodopsin| Length = 352 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = -2 Query: 177 GWRHINRIGV*SSLSFSHFTPRRDVHHVSF--FPFFIYFVLLEHYVCLIYG 31 GW G+ S ++TP +VH+ SF + F ++FV + YG Sbjct: 174 GWSRYIPEGMQCSCGVDYYTPTPEVHNESFVIYMFLVHFVTPLTIIFFCYG 224
>YAI1_ENCCU (Q8SU96) Hypothetical protein ECU10_1810| Length = 621 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -2 Query: 252 VAAREPMVTGCVRWEMVAQGIFDRFGWRHINRIGV 148 V+ M G RW+MV GIF+ G + + ++ V Sbjct: 489 VSTNRYMKDGTERWKMVGVGIFEEGGEKKVGKVEV 523
>GSPN_PECCC (P31710) General secretion pathway protein N (Pectic enzymes| secretion protein OUTN) Length = 248 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -2 Query: 264 LLTPVAAREPMVTGCVRWEMVA---QGIFDRFGWRHINRIGV*SSLSFSHFTPRRDV 103 LLT V P+ G V E QG RF WR + V +++FS F P D+ Sbjct: 29 LLTAV----PLPAGMVVAEAAGTLWQGSLQRFSWRTLTLDDVHWNITFSDFMPALDI 81
>DPO3A_MYCTU (P63977) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1184 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +3 Query: 165 YAAIQTGR-RYPVLPSPSGHTQ*P*APWLPQEL 260 YA + T R R PV P P GH Q A WL E+ Sbjct: 296 YADVWTPRDRMPVFPVPDGHDQ---ASWLRHEV 325
>DPO3A_MYCBO (P63978) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1184 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +3 Query: 165 YAAIQTGR-RYPVLPSPSGHTQ*P*APWLPQEL 260 YA + T R R PV P P GH Q A WL E+ Sbjct: 296 YADVWTPRDRMPVFPVPDGHDQ---ASWLRHEV 325
>Y6G1_ENCCU (Q8SV64) Hypothetical protein ECU06_1610| Length = 607 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = -2 Query: 234 MVTGCVRWEMVAQGIFDRFGWRHINRIGV*SSLSFSHFTPRRD---VHHVSFFP 82 M G RW+MVA GI D G + + + V F +R+ V+H+ F P Sbjct: 483 MKGGSERWKMVALGILDEGGEKKVGNVEV------GLFKGKREESVVYHLMFKP 530
>PDC_HANUV (P34734) Pyruvate decarboxylase (EC 4.1.1.1)| Length = 564 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Frame = -2 Query: 321 GHNDKEVIYRITALI-RTWSLLTPVAAREPMVTGCVRWEMVAQ 196 G+ D +V +R++A I T +++T +AA + C+R +AQ Sbjct: 118 GNGDFDVFHRMSANISETTAMITDLAAAPAEIDRCIRTAYIAQ 160 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,714,868 Number of Sequences: 219361 Number of extensions: 1178785 Number of successful extensions: 2599 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2556 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2599 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
