ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20j20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF509748.1| Hordeum vulgare subsp. vulgare Morex barley stem ... 466 e-128
2gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 214 2e-52
3gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 151 2e-33
4gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 98 2e-17
5gb|AF108009.1|AF108009 Hordeum vulgare HV1PST (Hv1Pst) gene, com... 94 4e-16
6gb|AF414177.1|AF414177 Hordeum vulgare clone pic20G1 NBS-LRR-lik... 90 6e-15
7gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxyl... 84 4e-13
8gb|AF509767.1| Hordeum vulgare subsp. vulgare isolate NRG021 Rpg... 82 1e-12
9gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) ge... 82 1e-12
10dbj|AB058924.1| Hordeum vulgare gene for protein kinase HvPKABA1... 82 1e-12
11gb|AY613782.1| Aegilops tauschii isolate TA2468 clone 2 HCBT-lik... 56 8e-05
12gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR c... 56 8e-05
13gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete se... 54 3e-04
14gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33... 48 0.021
15gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, comple... 46 0.081
16gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 42 1.3
17gb|AC121922.3| Mus musculus BAC clone RP24-198H19 from chromosom... 42 1.3
18gb|AC021760.9| Homo sapiens chromosome 8, clone RP11-433L7, comp... 42 1.3
19gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold 42 1.3
20gb|AF061204.1|AF061204 Hordeum vulgare subsp. spontaneum NPGS PI... 42 1.3
21gb|AF061203.1|AF061203 Hordeum vulgare cultivar Adorra beta-amyl... 42 1.3
22gb|AC153100.3| Oryctolagus cuniculus clone LB1-192J7, complete s... 42 1.3
23dbj|D49999.1|BLYAMYB Hordeum vulgare subsp. vulgare AMYB gene fo... 42 1.3
24gb|AC165247.2| Mus musculus BAC clone RP24-213G21 from chromosom... 40 5.0
25gb|AC125182.3| Mus musculus BAC clone RP23-293D23 from 15, compl... 40 5.0
26gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosom... 40 5.0
27gb|AC161880.5| Mus musculus BAC clone RP23-261N13 from chromosom... 40 5.0
28gb|AC126175.4| Homo sapiens 12 BAC RP11-539H23 (Roswell Park Can... 40 5.0
29gb|AC010093.8| Homo sapiens BAC clone RP11-323O5 from 2, complet... 40 5.0
30emb|AL671426.6| Mouse DNA sequence from clone RP23-107F15 on chr... 40 5.0 
>gb|AF509748.1| Hordeum vulgare subsp. vulgare Morex barley stem rust resistance
            protein (Rpg1) gene, complete cds
          Length = 17974

 Score =  466 bits (235), Expect = e-128
 Identities = 285/304 (93%)
 Strand = Plus / Plus

                                                                        
Query: 2    cccggcctctgcatcgagggatgcatacaaccatatattaagcaaacatagtgttcaagc 61
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| 
Sbjct: 1004 cccggcctctgcatcgagggatgcatacagccatatattaagcaaacatagtgtttaaga 1063

                                                                        
Query: 62   agtacaaagtatatgaaaaacggnnnnnnngatacatggtgaacatcacgccgcggcgtg 121
            |||||||||||||| ||||| |        ||||||||| ||||||| ||||||||| ||
Sbjct: 1064 agtacaaagtatataaaaaaagaaaaaaaagatacatggcgaacatcgcgccgcggcctg 1123

                                                                        
Query: 122  aagtggctaaaagataaagatgactaaacacctatcctattaatatgccgccatccaaac 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 aagtggctaaaagataaagatgactaaacacctatcctattaatatgccgccatccaaac 1183

                                                                        
Query: 182  cggtcgaagataccctgtgctaccatctcccagcggacacacccagtaaccataggctcc 241
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 cggttgaagataccctgtgctaccatctcccagcggacacacccagtaaccataggctcc 1243

                                                                        
Query: 242  ctggctgccacaggagttagtaacgaccatgtacggatcagtgcagtaattctgtagata 301
            || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 ctagctgccataggagttagtaacgaccatgtacggatcagtgcagtaattctgtagata 1303

                
Query: 302  acct 305
            ||||
Sbjct: 1304 acct 1307
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score =  214 bits (108), Expect = 2e-52
 Identities = 126/132 (95%)
 Strand = Plus / Plus

                                                                         
Query: 139   agatgactaaacacctatcctattaatatgccgccatccaaaccggtcgaagataccctg 198
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 70237 agatgactaaacacctatcctattaatatgccgccatccaaaccggttgaagataccctg 70296

                                                                         
Query: 199   tgctaccatctcccagcggacacacccagtaaccataggctccctggctgccacaggagt 258
             ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 70297 tgctaccatcttccatcggacacacccagtaaccataggctccctggcttccacaggagt 70356

                         
Query: 259   tagtaacgacca 270
              ||||| |||||
Sbjct: 70357 gagtaatgacca 70368



 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 94/111 (84%)
 Strand = Plus / Minus

                                                                         
Query: 171   gccatccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagtaa 230
             ||||||||||||||| ||||||| || | |||||| ||||||| |||  | |||||||||
Sbjct: 59306 gccatccaaaccggttgaagatatcccgcgctaccgtctcccatcgggtagacccagtaa 59247

                                                                
Query: 231   ccataggctccctggctgccacaggagttagtaacgaccatgtacggatca 281
             ||| ||||||||||  | || ||||||| ||||| ||||||||| ||||||
Sbjct: 59246 ccaaaggctccctgatttccgcaggagtgagtaatgaccatgtatggatca 59196



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 5     ggcctctgcatcgagggatgcatacaaccatatattaa 42
             ||||||||||||||| |||||||||| ||| |||||||
Sbjct: 70090 ggcctctgcatcgagtgatgcatacagccaaatattaa 70127
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus
              region
          Length = 129099

 Score =  151 bits (76), Expect = 2e-33
 Identities = 133/152 (87%)
 Strand = Plus / Minus

                                                                          
Query: 139    agatgactaaacacctatcctattaatatgccgccatccaaaccggtcgaagataccctg 198
              ||||| ||||||| |||||| ||||||||| |||||||||||||| | ||||||||||||
Sbjct: 113273 agatgcctaaacatctatccgattaatatgacgccatccaaaccgattgaagataccctg 113214

                                                                          
Query: 199    tgctaccatctcccagcggacacacccagtaaccataggctccctggctgccacaggagt 258
               |||||||||||||| ||||||| ||||||||||||| ||||||||||  ||||| |  |
Sbjct: 113213 agctaccatctcccaacggacacgcccagtaaccataagctccctggcgtccacatggat 113154

                                              
Query: 259    tagtaacgaccatgtacggatcagtgcagtaa 290
               ||||| ||||| |||||||||||||| ||||
Sbjct: 113153 gagtaatgaccacgtacggatcagtgcggtaa 113122



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                        
Query: 1      ccccggcctctgcatcgagggatgcatacaaccatatattaa 42
              ||||| ||||||||||||  |||||||||  |||||||||||
Sbjct: 113427 ccccgacctctgcatcgaaagatgcatacggccatatattaa 113386
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 97/113 (85%)
 Strand = Plus / Plus

                                                                         
Query: 169   ccgccatccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagt 228
             ||||||||||||||||| ||||||| || | | |||||||||||| |||  | ||||| |
Sbjct: 15581 ccgccatccaaaccggttgaagatatcccgcgttaccatctcccatcgggtagacccatt 15640

                                                                  
Query: 229   aaccataggctccctggctgccacaggagttagtaacgaccatgtacggatca 281
             ||||| ||||||||||| | || ||||||| ||||| ||||||||||||||||
Sbjct: 15641 aaccaaaggctccctggtttccgcaggagtgagtaatgaccatgtacggatca 15693
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>gb|AF108009.1|AF108009 Hordeum vulgare HV1PST (Hv1Pst) gene, complete cds
          Length = 3207

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 107/127 (84%)
 Strand = Plus / Minus

                                                                       
Query: 155 atcctattaatatgccgccatccaaaccggtcgaagataccctgtgctaccatctcccag 214
           |||||||||  |||||| |||||| | |||| ||||||| |||| ||||||||||  || 
Sbjct: 418 atcctattagcatgccgtcatccatatcggttgaagataacctgagctaccatctttcat 359

                                                                       
Query: 215 cggacacacccagtaaccataggctccctggctgccacaggagttagtaacgaccatgta 274
           |||||||||||| |||||| ||||||||||  | |||||||||| ||||| ||||| || 
Sbjct: 358 cggacacacccaataaccaaaggctccctgatttccacaggagtgagtaaggaccacgtg 299

                  
Query: 275 cggatca 281
           |||||||
Sbjct: 298 cggatca 292



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 1   ccccggcctctgcatcgagggatgcatacaaccat 35
           ||||||||||||||||||| |||||||||||||||
Sbjct: 587 ccccggcctctgcatcgagtgatgcatacaaccat 553
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>gb|AF414177.1|AF414177 Hordeum vulgare clone pic20G1 NBS-LRR-like protein gene, complete cds
          Length = 6291

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                        
Query: 170  cgccatccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagta 229
            ||||||||| | |||  ||||||| |||| |||||||||||||| ||| |||||||||||
Sbjct: 4976 cgccatccatatcggctgaagatagcctgagctaccatctcccatcgggcacacccagta 5035

                                                     
Query: 230  accataggctccctggctgccacaggagttagtaacgacca 270
            |||| ||||||||||  | |||||||||| ||||| |||||
Sbjct: 5036 accaaaggctccctgatttccacaggagtgagtaaggacca 5076



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                       
Query: 1    ccccggcctctgcatcgagggatgcatacaaccatatattaag 43
            ||||||||||||||||||| ||||| | ||||||| |||||||
Sbjct: 4805 ccccggcctctgcatcgagtgatgcctgcaaccatttattaag 4847
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>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
              SNF2P genes, complete cds; nucellin pseudogene, complete
              sequence; putative transposase, phosphatidylinositol
              phosphatidylcholine transfer protein sec14 cytosolic-like
              protein, and phytochrome P450-like protein genes, complete
              cds; and unknown genes
          Length = 438828

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                          
Query: 169    ccgccatccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagt 228
              ||||||||||||||||| ||||||| || | |||||||||||||| |||| | |||||||
Sbjct: 184387 ccgccatccaaaccggttgaagatatcccgagctaccatctcccatcggaaagacccagt 184446

                                
Query: 229    aaccataggctccctggc 246
              ||||| | ||||||||||
Sbjct: 184447 aaccaaatgctccctggc 184464
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>gb|AF509767.1| Hordeum vulgare subsp. vulgare isolate NRG021 Rpg1 region, genomic
            sequence
          Length = 2112

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                        
Query: 216  ggacacacccagtaaccataggctccctggctgccacaggagttagtaacgaccatgtac 275
            |||||||||||||||||| ||||||||| | |||| ||||||| ||||||||||||||||
Sbjct: 1292 ggacacacccagtaaccaaaggctccctagttgccgcaggagtgagtaacgaccatgtac 1351

             
Query: 276  g 276
            |
Sbjct: 1352 g 1352
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>gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) gene, partial cds; and
            MLA1 (Mla1) gene, complete cds
          Length = 18958

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                        
Query: 173  catccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagtaacc 232
            ||||||||||||| ||||||| |  |||||||||||| ||| |||  | ||| |||||||
Sbjct: 5023 catccaaaccggttgaagatatctcgtgctaccatcttccatcgggtagacctagtaacc 4964

                                                             
Query: 233  ataggctccctggctgccacaggagttagtaacgaccatgtacggatca 281
            | ||||||||||| | || ||||||| ||||| ||||| ||||||||||
Sbjct: 4963 aaaggctccctggtttccgcaggagtgagtaatgaccacgtacggatca 4915
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>dbj|AB058924.1| Hordeum vulgare gene for protein kinase HvPKABA1, complete cds,
            cultivar:Igri
          Length = 11684

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                        
Query: 200  gctaccatctcccagcggacacacccagtaaccataggctccctggctgccacaggagtt 259
            ||||||||||| || ||||||||| ||||||||| | ||||||||| |||| | ||||| 
Sbjct: 4612 gctaccatctctcaccggacacactcagtaaccaaaagctccctggttgccgcgggagtg 4671

                                 
Query: 260  agtaacgaccatgtacggatc 280
            |||||||||| ||||||||||
Sbjct: 4672 agtaacgaccgtgtacggatc 4692
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>gb|AY613782.1| Aegilops tauschii isolate TA2468 clone 2 HCBT-like putative PR
           gene, partial cds
          Length = 6062

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                       
Query: 173 catccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagtaacc 232
           ||||| ||||||| ||| ||| || ||||||||||||||||  ||   ||||||||||||
Sbjct: 12  catccgaaccggttgaatatagcccgtgctaccatctcccactggttgcacccagtaacc 71

                                                           
Query: 233 ataggctccctggctgccacaggagttagtaacgaccatgtacggatc 280
           | ||||||||| |   | | |||||| ||||| ||||| |||||||||
Sbjct: 72  aaaggctccctagagtctataggagtgagtaaggaccacgtacggatc 119



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 gtaacgaccatgtacggatc 280
           ||||||||||||||||||||
Sbjct: 592 gtaacgaccatgtacggatc 573
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>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like
             putative defense response protein, and putative alliin
             lyase genes, complete cds; and unknown genes
          Length = 106618

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 88/108 (81%)
 Strand = Plus / Plus

                                                                         
Query: 173   catccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagtaacc 232
             ||||| ||||||| ||| ||| || ||||||||||||||||  ||   ||||||||||||
Sbjct: 38379 catccgaaccggttgaatatagcccgtgctaccatctcccactggttgcacccagtaacc 38438

                                                             
Query: 233   ataggctccctggctgccacaggagttagtaacgaccatgtacggatc 280
             | ||||||||| |   | | |||||| ||||| ||||| |||||||||
Sbjct: 38439 aaaggctccctagagtctataggagtgagtaaggaccacgtacggatc 38486



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   gtaacgaccatgtacggatc 280
             ||||||||||||||||||||
Sbjct: 38958 gtaacgaccatgtacggatc 38939
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>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence
          Length = 285444

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                          
Query: 139    agatgactaaacacctatcctattaatatgccgccatccaaaccggtcgaagataccctg 198
              ||||||||||||||||||| ||||| |   |||| || ||||| ||| | ||||| || |
Sbjct: 243703 agatgactaaacacctatcttattattggaccgctattcaaactggttgtagatatcccg 243762

                                                 
Query: 199    tgctaccatctcccagcggacacacccagtaacca 233
              ||||||| ||||||| |||   |||||||||||||
Sbjct: 243763 tgctaccgtctcccaccggttgcacccagtaacca 243797



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                           
Query: 169    ccgccatccaaaccggtcgaagataccctgtgctaccatctccca 213
              ||||||||| ||||||  ||| ||| || ||||||||||||||||
Sbjct: 249869 ccgccatccgaaccggatgaaaatagcccgtgctaccatctccca 249825



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                          
Query: 202    taccatctcccagcggacacacccagtaaccataggctccctggctgccacaggagttag 261
              ||||||||||||| ||| | | |||||||||| | |||  |||||| |||  ||||| ||
Sbjct: 241153 taccatctcccaggggaaagatccagtaaccaaatgctttctggcttccatgggagtgag 241094

                                      
Query: 262    taacgaccatgtacggatcagtgc 285
              ||  ||||| | ||||||||||||
Sbjct: 241093 tagggaccacgaacggatcagtgc 241070
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>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds
          Length = 20754

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 96/120 (80%)
 Strand = Plus / Minus

                                                                        
Query: 169  ccgccatccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagt 228
            ||||||||||||||||| ||| |||  |  ||  ||||||||||| |||| | | |||||
Sbjct: 2878 ccgccatccaaaccggttgaaaatattccatgtcaccatctcccaccggatagatccagt 2819

                                                                        
Query: 229  aaccataggctccctggctgccacaggagttagtaacgaccatgtacggatcagtgcagt 288
            ||||| | ||||||||||  |||  ||||| |||| | ||||  ||||||||| ||||||
Sbjct: 2818 aaccaaacgctccctggcctccatcggagtgagtagcaaccacatacggatcaatgcagt 2759
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>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence
          Length = 142018

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 89/111 (80%)
 Strand = Plus / Minus

                                                                         
Query: 170   cgccatccaaaccggtcgaagataccctgtgctaccatctcccagcggacacacccagta 229
             |||||||| ||||||| ||| ||| || | || |||||||||||  ||   |||||||||
Sbjct: 88243 cgccatccgaaccggttgaatatagcccgagccaccatctcccattggttgcacccagta 88184

                                                                
Query: 230   accataggctccctggctgccacaggagttagtaacgaccatgtacggatc 280
             | || |||||||||||   ||| |||||| ||||| | ||| |||||||||
Sbjct: 88183 atcaaaggctccctggagtccataggagtgagtaagggccacgtacggatc 88133
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 139    agatgactaaacacctatcctatta 163
              ||||||||||||||||| |||||||
Sbjct: 109343 agatgactaaacacctagcctatta 109367
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>gb|AC121922.3| Mus musculus BAC clone RP24-198H19 from chromosome 9, complete sequence
          Length = 180690

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 234   taggctccctggctgccacag 254
             |||||||||||||||||||||
Sbjct: 15137 taggctccctggctgccacag 15157
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>gb|AC021760.9| Homo sapiens chromosome 8, clone RP11-433L7, complete sequence
          Length = 183059

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     atagtgttcaagcagtacaaa 69
              |||||||||||||||||||||
Sbjct: 116969 atagtgttcaagcagtacaaa 116989
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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 129    taaaagataaagatgactaaa 149
              |||||||||||||||||||||
Sbjct: 924717 taaaagataaagatgactaaa 924697
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>gb|AF061204.1|AF061204 Hordeum vulgare subsp. spontaneum NPGS PI296897 beta-amylase
            (beta-amy1) gene, complete cds
          Length = 4976

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 1    ccccggcctctgcatcgagggatgcatac 29
            ||||||||||||||||||  |||||||||
Sbjct: 4257 ccccggcctctgcatcgaaagatgcatac 4285
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>gb|AF061203.1|AF061203 Hordeum vulgare cultivar Adorra beta-amylase (beta-amy1) gene,
            complete cds
          Length = 5126

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 1    ccccggcctctgcatcgagggatgcatac 29
            ||||||||||||||||||  |||||||||
Sbjct: 4407 ccccggcctctgcatcgaaagatgcatac 4435
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>gb|AC153100.3| Oryctolagus cuniculus clone LB1-192J7, complete sequence
          Length = 132131

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 129   taaaagataaagatgactaaa 149
             |||||||||||||||||||||
Sbjct: 90937 taaaagataaagatgactaaa 90917
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>dbj|D49999.1|BLYAMYB Hordeum vulgare subsp. vulgare AMYB gene for beta-amylase, complete
            cds
          Length = 3825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 1    ccccggcctctgcatcgagggatgcatac 29
            ||||||||||||||||||  |||||||||
Sbjct: 3001 ccccggcctctgcatcgaaagatgcatac 3029
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>gb|AC165247.2| Mus musculus BAC clone RP24-213G21 from chromosome 13, complete
             sequence
          Length = 162597

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    atacaaccatatattaagcaaaca 49
             |||||| |||||||||||||||||
Sbjct: 97661 atacaaacatatattaagcaaaca 97638
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>gb|AC125182.3| Mus musculus BAC clone RP23-293D23 from 15, complete sequence
          Length = 169841

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    aaccatatattaagcaaaca 49
             ||||||||||||||||||||
Sbjct: 59855 aaccatatattaagcaaaca 59836
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>gb|AC163347.4| Mus musculus BAC clone RP23-259F13 from chromosome 18, complete
             sequence
          Length = 184836

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    catatattaagcaaacatagtgtt 56
             ||||||||||||||||||| ||||
Sbjct: 42871 catatattaagcaaacataatgtt 42848
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>gb|AC161880.5| Mus musculus BAC clone RP23-261N13 from chromosome 18, complete sequence
          Length = 204676

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     catatattaagcaaacatagtgtt 56
              ||||||||||||||||||| ||||
Sbjct: 187206 catatattaagcaaacataatgtt 187183
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>gb|AC126175.4| Homo sapiens 12 BAC RP11-539H23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 10301

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 122  aagtggctaaaagataaaga 141
            ||||||||||||||||||||
Sbjct: 2385 aagtggctaaaagataaaga 2366
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>gb|AC010093.8| Homo sapiens BAC clone RP11-323O5 from 2, complete sequence
          Length = 160930

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    gatgactaaacacctatcct 159
              ||||||||||||||||||||
Sbjct: 133944 gatgactaaacacctatcct 133963
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>emb|AL671426.6| Mouse DNA sequence from clone RP23-107F15 on chromosome X, complete
              sequence
          Length = 123745

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     tgttcaagcagtacaaagta 72
              ||||||||||||||||||||
Sbjct: 120752 tgttcaagcagtacaaagta 120733


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,569,487
Number of Sequences: 3902068
Number of extensions: 2569487
Number of successful extensions: 44913
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44840
Number of HSP's gapped (non-prelim): 68
length of query: 376
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 354
effective length of database: 17,147,199,772
effective search space: 6070108719288
effective search space used: 6070108719288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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