ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20i10 |
|---|---|
| Clone Library Name | barley_pub |
>ABCG4_HUMAN (Q9H172) ATP-binding cassette sub-family G member 4| Length = 646 Score = 47.0 bits (110), Expect = 3e-05 Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 20/130 (15%) Frame = -3 Query: 494 IXAQGLGLAIGATLLDIKKATTLASVTVMTFMLAGGFFV--KRVPPFISWLRYLSFNYHT 321 + AQ LGL IGA ++ AT + VT + +L GFFV K +P ++ W YLS+ + Sbjct: 515 LVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYG 574 Query: 320 YRLLLKVQYD---------------PVPDILMTSVPLDNGVTEVGALVAMI--IGYRVLA 192 + ++ Y P ++ ++ +++ + LV I + R+LA Sbjct: 575 FEGVILTIYGMERGDLTCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALRLLA 634 Query: 191 YLSLR-RVKA 165 YL LR RVK+ Sbjct: 635 YLVLRYRVKS 644
>ABCG1_HUMAN (P45844) ATP-binding cassette sub-family G member 1 (White protein| homolog) (ATP-binding cassette transporter 8) Length = 678 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -3 Query: 494 IXAQGLGLAIGATLLDIKKATTLASVTVMTFMLAGGFFVK--RVPPFISWLRYLSF 333 + AQ LGL IGA ++ AT + VT + +L GFFV +P ++ W+ Y+S+ Sbjct: 546 LVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISY 601
>ABCG1_MOUSE (Q64343) ATP-binding cassette sub-family G member 1 (White protein| homolog) (ATP-binding cassette transporter 8) Length = 666 Score = 44.7 bits (104), Expect = 1e-04 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = -3 Query: 494 IXAQGLGLAIGATLLDIKKATTLASVTVMTFMLAGGFFVK--RVPPFISWLRYLSF 333 + AQ LGL IGA ++ AT + VT + +L GFFV +P ++ W+ Y+S+ Sbjct: 534 LVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPAYLQWMSYISY 589
>WHITE_DROME (P10090) Protein white| Length = 687 Score = 42.4 bits (98), Expect = 7e-04 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 21/121 (17%) Frame = -3 Query: 476 GLAIGATLLDIKKATTLASVTVMTFMLAGGFFVKR--VPPFISWLRYLS-FNYHTYRLLL 306 G I A ++ ++ F+L GGFF+ VP ++ WL YLS F Y LL+ Sbjct: 560 GYLISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLI 619 Query: 305 KVQYDPVPDILM-----TSVPLDNGVT-------------EVGALVAMIIGYRVLAYLSL 180 D P + T+ P V + L +I+ +RVLAYL+L Sbjct: 620 NQWADVEPGEISCTSSNTTCPSSGKVILETLNFSAADLPLDYVGLAILIVSFRVLAYLAL 679 Query: 179 R 177 R Sbjct: 680 R 680
>WHITE_CERCA (Q17320) Protein white| Length = 679 Score = 38.5 bits (88), Expect = 0.010 Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 21/120 (17%) Frame = -3 Query: 476 GLAIGATLLDIKKATTLASVTVMTFMLAGGFFVKR--VPPFISWLRYLS-FNYHTYRLLL 306 G I A ++ ++ F+L GGFF+ VP + WL YLS F Y LL+ Sbjct: 552 GYLISCACSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEGLLI 611 Query: 305 KVQYDPVPDILM-----TSVPLDNGVT-------------EVGALVAMIIGYRVLAYLSL 180 D P + T+ P V + L +I+G+R+ AY++L Sbjct: 612 NQWADVKPGEITCTLSNTTCPSSGEVILETLNFSASDLPFDFIGLALLIVGFRISAYIAL 671
>PDR15_ARATH (Q7PC81) Putative pleiotropic drug resistance protein 15| Length = 1390 Score = 36.2 bits (82), Expect = 0.051 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = -3 Query: 470 AIGATLLDIKKATTLASVTVMTFMLAGGFFVKRVPPFISWLRY 342 AIGA D ATT+ S++++ + GGF V++ P SWL + Sbjct: 641 AIGAVFRDFDVATTIGSISIVLLSVFGGFIVRK-PSMPSWLEW 682
>ABCG2_RAT (Q80W57) ATP-binding cassette sub-family G member 2 (Breast cancer| resistance protein 1 homolog) Length = 657 Score = 35.8 bits (81), Expect = 0.066 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 28/135 (20%) Frame = -3 Query: 488 AQGLGLAIGATLLDIKKATTLASVTVMTFMLAGGFFV--KRVPPFISWLRYLSFNYHTYR 315 A + LAI A + AT L +++ + ML G V + + P++SWL+Y S + + Sbjct: 520 ASSMALAIAAGQSVVSVATLLMTISFVFMMLFSGLLVNLRTIGPWLSWLQYFSIPRYGFT 579 Query: 314 LL-----LKVQYDPVPDILMTSVPLDNGVTEVG---------------------ALVAMI 213 L L ++ P ++ M S +++ G AL MI Sbjct: 580 ALQHNEFLGQEFCPGLNVTMNSTCVNSYTICTGNDYLINQGIDLSPWGLWRNHVALACMI 639 Query: 212 IGYRVLAYLSLRRVK 168 I + +AYL L +K Sbjct: 640 IIFLTIAYLKLLFLK 654
>ABCG2_PIG (Q8MIB3) ATP-binding cassette sub-family G member 2 (Brain| multidrug resistance protein) Length = 656 Score = 34.7 bits (78), Expect = 0.15 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = -3 Query: 488 AQGLGLAIGATLLDIKKATTLASVTVMTFMLAGGFFV--KRVPPFISWLRYLSFNYHTYR 315 A + LAI A + AT L +++ + M+ G V K V P++SWL+Y S + + Sbjct: 521 ASSMALAIAAGQSVVSVATLLMTISFVFMMIFSGLLVNLKTVVPWLSWLQYFSIPRYGFS 580 Query: 314 LL 309 L Sbjct: 581 AL 582
>PDR14_ARATH (Q7PC82) Probable pleiotropic drug resistance protein 14| Length = 1392 Score = 33.1 bits (74), Expect = 0.43 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -3 Query: 470 AIGATLLDIKKATTLASVTVMTFMLAGGFFVKRVPPFISWLRY 342 AI A D ATT+ S++++ + GGF V++ P SWL + Sbjct: 643 AIAAVFRDFVVATTVGSISIVLLSVFGGFIVRK-PSMPSWLEW 684
>ABCG2_MOUSE (Q7TMS5) ATP-binding cassette sub-family G member 2 (Breast cancer| resistance protein 1 homolog) Length = 657 Score = 32.0 bits (71), Expect = 0.95 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = -3 Query: 488 AQGLGLAIGATLLDIKKATTLASVTVMTFMLAGGFFV--KRVPPFISWLRYLSFNYHTYR 315 A + LAI + AT L ++ + ML G V + + P++SWL+Y S + + Sbjct: 520 ASSMALAIATGQSVVSVATLLMTIAFVFMMLFSGLLVNLRTIGPWLSWLQYFSIPRYGFT 579 Query: 314 LL 309 L Sbjct: 580 AL 581
>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3206 Score = 30.8 bits (68), Expect = 2.1 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 9/67 (13%) Frame = +3 Query: 204 VPDDHRDQGSDLCHAVIQRYG------GHQDVRHGVVLHLQQQPVRV--VVEGQVPEPGY 359 VP RD LC I G H+ + HG+VL + VR+ ++G VPE Y Sbjct: 1712 VPYKLRDSSMQLCKEAIPNSGVSRWHTAHEYISHGIVLETLKSDVRIPFYLKG-VPEKVY 1770 Query: 360 E-WWNSL 377 E WN++ Sbjct: 1771 EKIWNAV 1777
>ABCG8_HUMAN (Q9H221) ATP-binding cassette sub-family G member 8 (Sterolin-2)| Length = 673 Score = 30.8 bits (68), Expect = 2.1 Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 21/125 (16%) Frame = -3 Query: 479 LGLAIGATLLDIKKATTLASVTVMTFMLAGGFFVK-----RVPPFISWLRYL-------- 339 + LA A L A+ ++ +F LAGGF + VP +IS + +L Sbjct: 545 MALAAAALLPTFHMASFFSNALYNSFYLAGGFMINLSSLWTVPAWISKVSFLRWCFEGLM 604 Query: 338 --SFNYHTYR-----LLLKVQYDPVPDIL-MTSVPLDNGVTEVGALVAMIIGYRVLAYLS 183 F+ TY+ L + V D + ++ + S PL ++ + G+ VL Y+S Sbjct: 605 KIQFSRRTYKMPLGNLTIAVSGDKILSVMELDSYPL---YAIYLIVIGLSGGFMVLYYVS 661 Query: 182 LRRVK 168 LR +K Sbjct: 662 LRFIK 666
>OLIG2_HUMAN (Q13516) Oligodendrocyte transcription factor 2 (Oligo2) (Basic| helix-loop-helix protein class B 1) (Protein kinase C-binding protein RACK17) (Protein kinase C-binding protein 2) Length = 323 Score = 30.0 bits (66), Expect = 3.6 Identities = 16/55 (29%), Positives = 19/55 (34%) Frame = -2 Query: 351 APVPVLQLPHVQAAAEGAVRPRAGHPXXXXXXXXXXXXXXXXXXXXXRVPGAGLP 187 AP+P H AAA A P HP +PG+GLP Sbjct: 196 APLPAATA-HPAAAAHAAHHPAVHHPILPPAAAAAAAAAAAAAVSSASLPGSGLP 249
>MOP_DESGI (Q46509) Aldehyde oxidoreductase (EC 1.2.99.7) (Molybdenum iron| sulfur protein) Length = 907 Score = 29.3 bits (64), Expect = 6.2 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -3 Query: 488 AQGLGLAIGATLLDIKKATTLASVTVMTFMLAGGFFVKRVP 366 AQG+GLA+ DIKK TL AG F+K++P Sbjct: 813 AQGIGLALSEDFEDIKKHATLVG--------AGFPFIKQIP 845 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,967,019 Number of Sequences: 219361 Number of extensions: 1319808 Number of successful extensions: 3933 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3774 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3917 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
