ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20i06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGK_TETTH (P50313) Phosphoglycerate kinase (EC 2.7.2.3) 28 4.7
2TLN1_CHICK (P54939) Talin-1 28 8.1
3GLDA_ECOLI (P0A9S5) Glycerol dehydrogenase (EC 1.1.1.6) (GLDH) 28 8.1
4GLDA_ECOL6 (P0A9S6) Glycerol dehydrogenase (EC 1.1.1.6) (GLDH) 28 8.1

>PGK_TETTH (P50313) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 420

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 24  HVRNKRQDRRIDXNATLKLGRLKSSLVLRALHFGLERL---NDRGEVLVGEAQR-FGNLV 191
           H+ NKR   R+D N  LK G++K    ++     ++++   N +G VL+    R  GN V
Sbjct: 14  HIENKRVLMRVDFNVPLKEGKVKDPTRIQGSVPSIKKILEQNPKGLVLMSHLGRPDGNRV 73

Query: 192 Q 194
           +
Sbjct: 74  E 74



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>TLN1_CHICK (P54939) Talin-1|
          Length = 2541

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = -3

Query: 252  LALAEXXXXAHSPXCSCKRAVQGCQIVGPRRPGLLRGH*GAQGQ----SAELAAL 100
            +A A+    ++    + ++ VQ C++V  + P L++G  G+Q Q    SA+LA +
Sbjct: 932  IAAAQHAAASNKNPAAQQQLVQSCKVVADQIPMLVQGVRGSQSQPDSPSAQLALI 986



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>GLDA_ECOLI (P0A9S5) Glycerol dehydrogenase (EC 1.1.1.6) (GLDH)|
          Length = 367

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +3

Query: 15  AHMHVRNKRQDRRIDXNATLKLGRLKSS--LVLRALHFGLERLNDRGEVLVGEAQRFGNL 188
           A  HV     +R I+ N  L     +S       A+H GL  + D      GE   FG L
Sbjct: 221 AEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTL 280

Query: 189 VQLV 200
            QLV
Sbjct: 281 TQLV 284



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>GLDA_ECOL6 (P0A9S6) Glycerol dehydrogenase (EC 1.1.1.6) (GLDH)|
          Length = 367

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
 Frame = +3

Query: 15  AHMHVRNKRQDRRIDXNATLKLGRLKSS--LVLRALHFGLERLNDRGEVLVGEAQRFGNL 188
           A  HV     +R I+ N  L     +S       A+H GL  + D      GE   FG L
Sbjct: 221 AEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTL 280

Query: 189 VQLV 200
            QLV
Sbjct: 281 TQLV 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,078,644
Number of Sequences: 219361
Number of extensions: 400025
Number of successful extensions: 985
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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