ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20i06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111704.1| Zea mays CL39004_1 mRNA sequence 80 4e-12
2ref|NM_193608.1| Oryza sativa (japonica cultivar-group), predic... 78 2e-11
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
5dbj|AK064876.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
6ref|NM_101628.3| Arabidopsis thaliana phosphogluconate dehydroge... 40 3.4
7gb|BC078607.1| Xenopus laevis hypothetical protein LOC446927, mR... 40 3.4
8gb|BT008734.1| Arabidopsis thaliana At1g17650 gene, complete cds 40 3.4
9gb|AY093135.1| Arabidopsis thaliana unknown protein (At1g17650) ... 40 3.4
10emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, ... 40 3.4
11gb|AY085690.1| Arabidopsis thaliana clone 17110 mRNA, complete s... 40 3.4
12gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BAC F11... 40 3.4
13gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana... 40 3.4 
>gb|AY111704.1| Zea mays CL39004_1 mRNA sequence
          Length = 865

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 85/100 (85%)
 Strand = Plus / Plus

                                                                       
Query: 111 gctctgcactttggccttgagcgcctcaatgaccgcggagaagtcctggtcggcgaggcc 170
           ||||||||||||||| || ||||| ||||| ||||| |||||||| |||||    |||||
Sbjct: 241 gctctgcactttggctttcagcgcttcaataaccgccgagaagtcgtggtcactaaggcc 300

                                                   
Query: 171 caacgatttggcaaccttgtacagctcgtttgcagctgca 210
            | |||||| ||| |||||||||||||||| |||||||||
Sbjct: 301 gagcgattttgcagccttgtacagctcgttcgcagctgca 340
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>ref|NM_193608.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1032

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 111  gctctgcactttggccttgagcgcctcaatgaccgcggagaagtcctggtcggcgaggcc 170
            ||||||| | || ||||| |||||||| || || || |||||||||||||| || || ||
Sbjct: 1026 gctctgctcctttgccttcagcgcctcgattacagcagagaagtcctggtctgcaagccc 967

                                                   
Query: 171  caacgatttggcaaccttgtacagctcgtttgcagctgc 209
             | |||||| || ||||||||||||||||||||||||||
Sbjct: 966  aagcgatttcgcgaccttgtacagctcgtttgcagctgc 928
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                            
Query: 111      gctctgcactttggccttgagcgcctcaatgaccgcggagaagtcctggtcggcgaggcc 170
                ||||||| | || ||||| |||||||| || || || |||||||||||||| || || ||
Sbjct: 22084480 gctctgctcctttgccttcagcgcctcgattacagcagagaagtcctggtctgcaagccc 22084539

                                                       
Query: 171      caacgatttggcaaccttgtacagctcgtttgcagctgc 209
                 | |||||| || ||||||||||||||||||||||||||
Sbjct: 22084540 aagcgatttcgcgaccttgtacagctcgtttgcagctgc 22084578
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>dbj|AP003413.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1151A10
          Length = 124344

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 84/99 (84%)
 Strand = Plus / Plus

                                                                         
Query: 111   gctctgcactttggccttgagcgcctcaatgaccgcggagaagtcctggtcggcgaggcc 170
             ||||||| | || ||||| |||||||| || || || |||||||||||||| || || ||
Sbjct: 95993 gctctgctcctttgccttcagcgcctcgattacagcagagaagtcctggtctgcaagccc 96052

                                                    
Query: 171   caacgatttggcaaccttgtacagctcgtttgcagctgc 209
              | |||||| || ||||||||||||||||||||||||||
Sbjct: 96053 aagcgatttcgcgaccttgtacagctcgtttgcagctgc 96091
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>dbj|AK064876.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000J16, full
            insert sequence
          Length = 1256

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 111  gctctgcactttggccttgagcgcctcaatgaccgcggagaagtcctggtcggcgaggcc 170
            ||||||| | || ||||| |||||||| || || || |||||||||||||| || || ||
Sbjct: 1090 gctctgctcctttgccttcagcgcctcgattacagcagagaagtcctggtctgcaagccc 1031

                                                   
Query: 171  caacgatttggcaaccttgtacagctcgtttgcagctgc 209
             | |||||| || ||||||||||||||||||||||||||
Sbjct: 1030 aagcgatttcgcgaccttgtacagctcgtttgcagctgc 992
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>ref|NM_101628.3| Arabidopsis thaliana phosphogluconate dehydrogenase (decarboxylating)
            AT1G17650 mRNA, complete cds
          Length = 1242

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 175  gatttggcaaccttgtacagctcgtttgcagc 206
            ||||| ||||||||||| |||||||| |||||
Sbjct: 1052 gattttgcaaccttgtaaagctcgttcgcagc 1021
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>gb|BC078607.1| Xenopus laevis hypothetical protein LOC446927, mRNA (cDNA clone
           IMAGE:6931340), partial cds
          Length = 1181

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 gagctctgcactttggcctt 128
           ||||||||||||||||||||
Sbjct: 806 gagctctgcactttggcctt 787
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>gb|BT008734.1| Arabidopsis thaliana At1g17650 gene, complete cds
          Length = 1032

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 175 gatttggcaaccttgtacagctcgtttgcagc 206
           ||||| ||||||||||| |||||||| |||||
Sbjct: 959 gattttgcaaccttgtaaagctcgttcgcagc 928
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>gb|AY093135.1| Arabidopsis thaliana unknown protein (At1g17650) mRNA, complete cds
          Length = 1164

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 175 gatttggcaaccttgtacagctcgtttgcagc 206
           ||||| ||||||||||| |||||||| |||||
Sbjct: 975 gattttgcaaccttgtaaagctcgttcgcagc 944
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>emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, complete sequence
          Length = 202570

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    gatttggcaaccttgtacag 194
              ||||||||||||||||||||
Sbjct: 183116 gatttggcaaccttgtacag 183097
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>gb|AY085690.1| Arabidopsis thaliana clone 17110 mRNA, complete sequence
          Length = 1156

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 175 gatttggcaaccttgtacagctcgtttgcagc 206
           ||||| ||||||||||| |||||||| |||||
Sbjct: 990 gattttgcaaccttgtaaagctcgttcgcagc 959
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>gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BAC F11A6 genomic sequence, complete
             sequence
          Length = 98950

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 175   gatttggcaaccttgtacagctcgtttgcagc 206
             ||||| ||||||||||| |||||||| |||||
Sbjct: 49428 gattttgcaaccttgtaaagctcgttcgcagc 49459
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>gb|AC022492.5|AC022492 Genomic sequence for Arabidopsis thaliana BAC F1L3 from chromosome I,
              complete sequence
          Length = 127968

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 175    gatttggcaaccttgtacagctcgtttgcagc 206
              ||||| ||||||||||| |||||||| |||||
Sbjct: 123417 gattttgcaaccttgtaaagctcgttcgcagc 123448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,335,774
Number of Sequences: 3902068
Number of extensions: 1335774
Number of successful extensions: 22938
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22914
Number of HSP's gapped (non-prelim): 23
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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