ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal20i05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 54 2e-04
2ref|XM_814520.1| Trypanosoma cruzi strain CL Brener hypothetical... 44 0.17
3gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 44 0.17
4ref|NM_207993.1| Eremothecium gossypii AAR099Wp (AAR099W), mRNA 44 0.17
5gb|AY601103.1| Trichoplusia ni beta 1,4-N-acetylgalactosaminyltr... 42 0.67
6ref|XM_756749.1| Ustilago maydis 521 hypothetical protein (UM056... 42 0.67
7gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell... 42 0.67
8gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 ... 42 0.67
9gb|AY022301.1| Oryza sativa microsatellite MRG4626 containing (A... 40 2.6
10gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genom... 40 2.6
11ref|XM_604746.2| PREDICTED: Bos taurus similar to Serine/threoni... 40 2.6
12ref|XM_711497.1| Candida albicans SC5314 hypothetical protein (C... 40 2.6
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.6
14emb|AL358492.19| Human DNA sequence from clone RP11-340B24 on ch... 40 2.6
15emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 40 2.6
16ref|NM_164376.1| Drosophila melanogaster kismet CG3696-RB, trans... 40 2.6
17ref|NM_078717.2| Drosophila melanogaster kismet CG3696-RA, trans... 40 2.6
18gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21... 40 2.6
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
20gb|AF215703.1|AF215703 Drosophila melanogaster KISMET-L long iso... 40 2.6
21gb|AF113847.1|AF113847 Drosophila melanogaster kismet (kis) mRNA... 40 2.6
22gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 ... 40 2.6
23gb|AC004274.1|AC004274 Drosophila melanogaster DNA sequence (P1 ... 40 2.6
24dbj|D38159.1| Bombyx mori mRNA for xanthine dehydrogenase, compl... 40 2.6
25dbj|AB005911.1| Bombyx mori DNA for xanthine dehydrogenase, part... 40 2.6
26dbj|AB003310.1| Candida albicans DNA for chitin synthase regulat... 40 2.6
27dbj|AB060285.1| Bombyx mori BmXDH1 mRNA for truncated xanthine d... 40 2.6

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 150    cgccttctgctgctgctgccgcaacggccgg 180
              |||||||||| ||||||||||||||||||||
Sbjct: 204315 cgccttctgccgctgctgccgcaacggccgg 204345



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>ref|XM_814520.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510303.260) partial mRNA
          Length = 1116

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 146 actgcgccttctgctgctgctgccgc 171
           |||| |||||||||||||||||||||
Sbjct: 928 actgggccttctgctgctgctgccgc 953



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>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I,
              complete sequence
          Length = 691920

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 156    ctgctgctgctgccgcaacggc 177
              ||||||||||||||||||||||
Sbjct: 520820 ctgctgctgctgccgcaacggc 520799



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>ref|NM_207993.1| Eremothecium gossypii AAR099Wp (AAR099W), mRNA
          Length = 1668

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 156 ctgctgctgctgccgcaacggc 177
           ||||||||||||||||||||||
Sbjct: 337 ctgctgctgctgccgcaacggc 316



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>gb|AY601103.1| Trichoplusia ni beta 1,4-N-acetylgalactosaminyltransferase mRNA,
           complete cds
          Length = 1269

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 147 ctgcgccttctgctgctgctg 167
           |||||||||||||||||||||
Sbjct: 25  ctgcgccttctgctgctgctg 45



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>ref|XM_756749.1| Ustilago maydis 521 hypothetical protein (UM05695.1) partial mRNA
          Length = 2268

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 149 gcgccttctgctgctgctgcc 169
           |||||||||||||||||||||
Sbjct: 715 gcgccttctgctgctgctgcc 735



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>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185405

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 144    ccactgcgccttctgctgctgctgc 168
              |||||||| ||||||||||||||||
Sbjct: 129892 ccactgcgtcttctgctgctgctgc 129916



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>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete
              sequence
          Length = 299633

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 144    ccactgcgccttctgctgctgctgc 168
              |||||||| ||||||||||||||||
Sbjct: 246937 ccactgcgtcttctgctgctgctgc 246961



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>gb|AY022301.1| Oryza sativa microsatellite MRG4626 containing (AAG)X11, closest to
           marker S10742, genomic sequence
          Length = 233

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 153 cttctgctgctgctgccgca 172
           ||||||||||||||||||||
Sbjct: 154 cttctgctgctgctgccgca 135



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>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete
              sequence
          Length = 141691

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 153    cttctgctgctgctgccgca 172
              ||||||||||||||||||||
Sbjct: 129956 cttctgctgctgctgccgca 129975



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>ref|XM_604746.2| PREDICTED: Bos taurus similar to Serine/threonine-protein kinase 10
            (Lymphocyte-oriented kinase) (LOC526376), partial mRNA
          Length = 4672

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 149  gcgccttctgctgctgctgccgca 172
            ||||||||| ||||||||||||||
Sbjct: 1872 gcgccttctcctgctgctgccgca 1849



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>ref|XM_711497.1| Candida albicans SC5314 hypothetical protein (CaO19_7349), mRNA
          Length = 2256

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 95  caacancagcaccaaaatcaaca 117
           ||||| |||||||||||||||||
Sbjct: 376 caacaacagcaccaaaatcaaca 398



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 153      cttctgctgctgctgccgca 172
                ||||||||||||||||||||
Sbjct: 24754409 cttctgctgctgctgccgca 24754428



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>emb|AL358492.19| Human DNA sequence from clone RP11-340B24 on chromosome 1 Contains a
             heat shock 10kDa protein 1 (chaperonin 10) (HSPE1)
             pseudogene, the gene for a novel protein (FLJ37118,
             FLJ37833) and a cofilin 1 (non-muscle) (CFL1) pseudogene,
             complete sequence
          Length = 135992

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   ccttctgctgctgctgccgc 171
             ||||||||||||||||||||
Sbjct: 71201 ccttctgctgctgctgccgc 71182



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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   cttctgctgctgctgccgca 172
             ||||||||||||||||||||
Sbjct: 49928 cttctgctgctgctgccgca 49947



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>ref|NM_164376.1| Drosophila melanogaster kismet CG3696-RB, transcript variant B (kis),
            mRNA
          Length = 8212

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 156  ctgctgctgctgccgcaacggccg 179
            ||||||| ||||||||||||||||
Sbjct: 2497 ctgctgcagctgccgcaacggccg 2474



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>ref|NM_078717.2| Drosophila melanogaster kismet CG3696-RA, transcript variant A (kis),
             mRNA
          Length = 17918

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 156   ctgctgctgctgccgcaacggccg 179
             ||||||| ||||||||||||||||
Sbjct: 12203 ctgctgcagctgccgcaacggccg 12180



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>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone
             BACR22C14, complete sequence
          Length = 163461

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 156   ctgctgctgctgccgcaacggccg 179
             ||||||| ||||||||||||||||
Sbjct: 40852 ctgctgcagctgccgcaacggccg 40875



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 153      cttctgctgctgctgccgca 172
                ||||||||||||||||||||
Sbjct: 24671239 cttctgctgctgctgccgca 24671258



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>gb|AF215703.1|AF215703 Drosophila melanogaster KISMET-L long isoform (kis) mRNA, complete cds
          Length = 17424

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 156   ctgctgctgctgccgcaacggccg 179
             ||||||| ||||||||||||||||
Sbjct: 12203 ctgctgcagctgccgcaacggccg 12180



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>gb|AF113847.1|AF113847 Drosophila melanogaster kismet (kis) mRNA, complete cds
          Length = 8238

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 156  ctgctgctgctgccgcaacggccg 179
            ||||||| ||||||||||||||||
Sbjct: 2510 ctgctgcagctgccgcaacggccg 2487



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>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete
              sequence
          Length = 305900

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 156    ctgctgctgctgccgcaacggccg 179
              ||||||| ||||||||||||||||
Sbjct: 216830 ctgctgcagctgccgcaacggccg 216853



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>gb|AC004274.1|AC004274 Drosophila melanogaster DNA sequence (P1 DS07049 (D133)), complete
             sequence
          Length = 65196

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 156   ctgctgctgctgccgcaacggccg 179
             ||||||| ||||||||||||||||
Sbjct: 62924 ctgctgcagctgccgcaacggccg 62901



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>dbj|D38159.1| Bombyx mori mRNA for xanthine dehydrogenase, complete cds
          Length = 4260

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 71  ccaaaaataaccgacaagaaaata 94
           ||||| ||||||||||||||||||
Sbjct: 305 ccaaatataaccgacaagaaaata 328



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>dbj|AB005911.1| Bombyx mori DNA for xanthine dehydrogenase, partial and complete cds
          Length = 21115

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    ccaaaaataaccgacaagaaaata 94
             ||||| ||||||||||||||||||
Sbjct: 10291 ccaaatataaccgacaagaaaata 10314



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>dbj|AB003310.1| Candida albicans DNA for chitin synthase regulatory factor, complete
            cds
          Length = 4533

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 95   caacancagcaccaaaatcaaca 117
            ||||| |||||||||||||||||
Sbjct: 1195 caacaacagcaccaaaatcaaca 1217



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>dbj|AB060285.1| Bombyx mori BmXDH1 mRNA for truncated xanthine dehydrogenase,
           complete cds, mutant strain:oq
          Length = 4123

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 71  ccaaaaataaccgacaagaaaata 94
           ||||| ||||||||||||||||||
Sbjct: 259 ccaaatataaccgacaagaaaata 282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,356,986
Number of Sequences: 3902068
Number of extensions: 2356986
Number of successful extensions: 337622
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 337207
Number of HSP's gapped (non-prelim): 403
length of query: 208
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 186
effective length of database: 17,147,199,772
effective search space: 3189379157592
effective search space used: 3189379157592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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