| Clone Name | rbaal20i05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 54.0 bits (27), Expect = 2e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 150 cgccttctgctgctgctgccgcaacggccgg 180 |||||||||| |||||||||||||||||||| Sbjct: 204315 cgccttctgccgctgctgccgcaacggccgg 204345
>ref|XM_814520.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053510303.260) partial mRNA Length = 1116 Score = 44.1 bits (22), Expect = 0.17 Identities = 25/26 (96%) Strand = Plus / Plus Query: 146 actgcgccttctgctgctgctgccgc 171 |||| ||||||||||||||||||||| Sbjct: 928 actgggccttctgctgctgctgccgc 953
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 156 ctgctgctgctgccgcaacggc 177 |||||||||||||||||||||| Sbjct: 520820 ctgctgctgctgccgcaacggc 520799
>ref|NM_207993.1| Eremothecium gossypii AAR099Wp (AAR099W), mRNA Length = 1668 Score = 44.1 bits (22), Expect = 0.17 Identities = 22/22 (100%) Strand = Plus / Minus Query: 156 ctgctgctgctgccgcaacggc 177 |||||||||||||||||||||| Sbjct: 337 ctgctgctgctgccgcaacggc 316
>gb|AY601103.1| Trichoplusia ni beta 1,4-N-acetylgalactosaminyltransferase mRNA, complete cds Length = 1269 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 ctgcgccttctgctgctgctg 167 ||||||||||||||||||||| Sbjct: 25 ctgcgccttctgctgctgctg 45
>ref|XM_756749.1| Ustilago maydis 521 hypothetical protein (UM05695.1) partial mRNA Length = 2268 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 gcgccttctgctgctgctgcc 169 ||||||||||||||||||||| Sbjct: 715 gcgccttctgctgctgctgcc 735
>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185405 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 ccactgcgccttctgctgctgctgc 168 |||||||| |||||||||||||||| Sbjct: 129892 ccactgcgtcttctgctgctgctgc 129916
>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete sequence Length = 299633 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 ccactgcgccttctgctgctgctgc 168 |||||||| |||||||||||||||| Sbjct: 246937 ccactgcgtcttctgctgctgctgc 246961
>gb|AY022301.1| Oryza sativa microsatellite MRG4626 containing (AAG)X11, closest to marker S10742, genomic sequence Length = 233 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 cttctgctgctgctgccgca 172 |||||||||||||||||||| Sbjct: 154 cttctgctgctgctgccgca 135
>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete sequence Length = 141691 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cttctgctgctgctgccgca 172 |||||||||||||||||||| Sbjct: 129956 cttctgctgctgctgccgca 129975
>ref|XM_604746.2| PREDICTED: Bos taurus similar to Serine/threonine-protein kinase 10 (Lymphocyte-oriented kinase) (LOC526376), partial mRNA Length = 4672 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gcgccttctgctgctgctgccgca 172 ||||||||| |||||||||||||| Sbjct: 1872 gcgccttctcctgctgctgccgca 1849
>ref|XM_711497.1| Candida albicans SC5314 hypothetical protein (CaO19_7349), mRNA Length = 2256 Score = 40.1 bits (20), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 95 caacancagcaccaaaatcaaca 117 ||||| ||||||||||||||||| Sbjct: 376 caacaacagcaccaaaatcaaca 398
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cttctgctgctgctgccgca 172 |||||||||||||||||||| Sbjct: 24754409 cttctgctgctgctgccgca 24754428
>emb|AL358492.19| Human DNA sequence from clone RP11-340B24 on chromosome 1 Contains a heat shock 10kDa protein 1 (chaperonin 10) (HSPE1) pseudogene, the gene for a novel protein (FLJ37118, FLJ37833) and a cofilin 1 (non-muscle) (CFL1) pseudogene, complete sequence Length = 135992 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 ccttctgctgctgctgccgc 171 |||||||||||||||||||| Sbjct: 71201 ccttctgctgctgctgccgc 71182
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cttctgctgctgctgccgca 172 |||||||||||||||||||| Sbjct: 49928 cttctgctgctgctgccgca 49947
>ref|NM_164376.1| Drosophila melanogaster kismet CG3696-RB, transcript variant B (kis), mRNA Length = 8212 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ctgctgctgctgccgcaacggccg 179 ||||||| |||||||||||||||| Sbjct: 2497 ctgctgcagctgccgcaacggccg 2474
>ref|NM_078717.2| Drosophila melanogaster kismet CG3696-RA, transcript variant A (kis), mRNA Length = 17918 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ctgctgctgctgccgcaacggccg 179 ||||||| |||||||||||||||| Sbjct: 12203 ctgctgcagctgccgcaacggccg 12180
>gb|AC008371.4| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone BACR22C14, complete sequence Length = 163461 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 ctgctgctgctgccgcaacggccg 179 ||||||| |||||||||||||||| Sbjct: 40852 ctgctgcagctgccgcaacggccg 40875
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 cttctgctgctgctgccgca 172 |||||||||||||||||||| Sbjct: 24671239 cttctgctgctgctgccgca 24671258
>gb|AF215703.1|AF215703 Drosophila melanogaster KISMET-L long isoform (kis) mRNA, complete cds Length = 17424 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ctgctgctgctgccgcaacggccg 179 ||||||| |||||||||||||||| Sbjct: 12203 ctgctgcagctgccgcaacggccg 12180
>gb|AF113847.1|AF113847 Drosophila melanogaster kismet (kis) mRNA, complete cds Length = 8238 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ctgctgctgctgccgcaacggccg 179 ||||||| |||||||||||||||| Sbjct: 2510 ctgctgcagctgccgcaacggccg 2487
>gb|AE003590.3| Drosophila melanogaster chromosome 2L, section 1 of 83 of the complete sequence Length = 305900 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 156 ctgctgctgctgccgcaacggccg 179 ||||||| |||||||||||||||| Sbjct: 216830 ctgctgcagctgccgcaacggccg 216853
>gb|AC004274.1|AC004274 Drosophila melanogaster DNA sequence (P1 DS07049 (D133)), complete sequence Length = 65196 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 ctgctgctgctgccgcaacggccg 179 ||||||| |||||||||||||||| Sbjct: 62924 ctgctgcagctgccgcaacggccg 62901
>dbj|D38159.1| Bombyx mori mRNA for xanthine dehydrogenase, complete cds Length = 4260 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ccaaaaataaccgacaagaaaata 94 ||||| |||||||||||||||||| Sbjct: 305 ccaaatataaccgacaagaaaata 328
>dbj|AB005911.1| Bombyx mori DNA for xanthine dehydrogenase, partial and complete cds Length = 21115 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ccaaaaataaccgacaagaaaata 94 ||||| |||||||||||||||||| Sbjct: 10291 ccaaatataaccgacaagaaaata 10314
>dbj|AB003310.1| Candida albicans DNA for chitin synthase regulatory factor, complete cds Length = 4533 Score = 40.1 bits (20), Expect = 2.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 95 caacancagcaccaaaatcaaca 117 ||||| ||||||||||||||||| Sbjct: 1195 caacaacagcaccaaaatcaaca 1217
>dbj|AB060285.1| Bombyx mori BmXDH1 mRNA for truncated xanthine dehydrogenase, complete cds, mutant strain:oq Length = 4123 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 ccaaaaataaccgacaagaaaata 94 ||||| |||||||||||||||||| Sbjct: 259 ccaaatataaccgacaagaaaata 282 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,356,986 Number of Sequences: 3902068 Number of extensions: 2356986 Number of successful extensions: 337622 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 337207 Number of HSP's gapped (non-prelim): 403 length of query: 208 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 186 effective length of database: 17,147,199,772 effective search space: 3189379157592 effective search space used: 3189379157592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)