>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3|
          Length = 108

 Score =  161 bits (407), Expect = 2e-39
 Identities = 80/95 (84%), Positives = 88/95 (92%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGHVVTKRE PPRP++RKGK +KR  F+R+LI+EVAG APYEKRITELLKVGKDKR
Sbjct: 8   VGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKR 67

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 312
           ALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G G
Sbjct: 68  ALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAG 102

>RL36A_ARATH (O80929) 60S ribosomal protein L36-1|
          Length = 113

 Score =  158 bits (399), Expect = 1e-38
 Identities = 79/93 (84%), Positives = 85/93 (91%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGHVVT+REL PRP+ RKGK +KR  F+R LIREVAG APYEKRITELLKVGKDKR
Sbjct: 12  VGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKR 71

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 318
           ALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G
Sbjct: 72  ALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLG 104

>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2|
          Length = 112

 Score =  157 bits (397), Expect = 2e-38
 Identities = 79/95 (83%), Positives = 86/95 (90%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGHVVT+REL PRP  RKGK +KR  F+R+LI+EVAG APYEKRITELLKVGKDKR
Sbjct: 12  VGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKR 71

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 312
           ALKVAKRKLGTHKRAK+KREEMSSVLRKMRS G G
Sbjct: 72  ALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGG 106

>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36|
          Length = 101

 Score =  130 bits (328), Expect = 2e-30
 Identities = 65/95 (68%), Positives = 79/95 (83%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH VTK+   PRPS RKG  ++RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGTG 312
           ALK+ KRKLGTH R KKKREEM+ VLRKM++A  G
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKG 100

>RL36_DAUCA (P52866) 60S ribosomal protein L36|
          Length = 106

 Score =  123 bits (308), Expect = 5e-28
 Identities = 60/80 (75%), Positives = 69/80 (86%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH+VTK+EL PRPSDRKGK +KR HFVR+LIREVAGF PYEKRITELLKVGKDKR
Sbjct: 12  VGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKR 71

Query: 416 ALKVAKRKLGTHKRAKKKRE 357
           ALKV + K+G H +  K+ E
Sbjct: 72  ALKVRQEKVG-HSQESKEEE 90



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -2

Query: 402 EAKVGHPQEGQEEERGDVQCPQEDEICWYW 313
           + KVGH QE +EEERGDVQC   DE  W+W
Sbjct: 77  QEKVGHSQESKEEERGDVQCSPPDE-GWWW 105

>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36|
          Length = 104

 Score =  117 bits (294), Expect = 2e-26
 Identities = 59/92 (64%), Positives = 70/92 (76%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH VTK    PR S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           ALK  K+++GTH RAK+KREE+S+VL  MR A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99

>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36|
          Length = 104

 Score =  117 bits (294), Expect = 2e-26
 Identities = 59/92 (64%), Positives = 70/92 (76%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH VTK    PR S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           ALK  K+++GTH RAK+KREE+S+VL  MR A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99

>RL36_BOVIN (Q3T171) 60S ribosomal protein L36|
          Length = 104

 Score =  117 bits (292), Expect = 3e-26
 Identities = 59/92 (64%), Positives = 70/92 (76%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH VTK    PR S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           ALK  K+++GTH RAK+KREE+S+VL  MR A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99

>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A|
          Length = 99

 Score =  117 bits (292), Expect = 3e-26
 Identities = 57/92 (61%), Positives = 76/92 (82%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKG V+TKR+LP RPS RKG+ +KR  FVRS++REVAGFAPYE+R+ EL++  +DKR
Sbjct: 7   VGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKR 66

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           A K+AK++LGT KRAK K EE++SV++  R A
Sbjct: 67  ARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98

>RL36_RAT (P39032) 60S ribosomal protein L36|
          Length = 104

 Score =  115 bits (288), Expect = 1e-25
 Identities = 58/92 (63%), Positives = 69/92 (75%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH VTK    PR S R+G+ TK   FVR +IREV  FAPYE+R  ELLKV KDKR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKR 67

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           ALK  K+++GTH RAK+KREE+S+VL  MR A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMRKA 99

>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B|
          Length = 99

 Score =  114 bits (285), Expect = 2e-25
 Identities = 56/92 (60%), Positives = 74/92 (80%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKG  +TKR+LP RPS RKG  +KR  FVRS++REVAGFAPYE+R+ EL++  +DKR
Sbjct: 7   VGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKR 66

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           A K+AK++LGT KRAK K EE++SV++  R A
Sbjct: 67  ARKLAKKRLGTLKRAKGKIEELTSVIQSSRLA 98

>RL36_MOUSE (P47964) 60S ribosomal protein L36|
          Length = 104

 Score =  109 bits (272), Expect = 7e-24
 Identities = 55/92 (59%), Positives = 66/92 (71%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH VTK    PR S R+ + T    FVR +IREV GFAPYE+R  ELLKV K KR
Sbjct: 8   VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKR 67

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           ALK  K+++GTH RAK+KREE+S+VL  M  A
Sbjct: 68  ALKFIKKRVGTHIRAKRKREELSNVLAAMEEA 99

>RL36_CAEEL (P49181) 60S ribosomal protein L36|
          Length = 103

 Score =  104 bits (260), Expect = 2e-22
 Identities = 47/92 (51%), Positives = 66/92 (71%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH  T+  +  R +  KG  +K+   VR L+RE+ GFAPYE+R+ E+L++ KDKR
Sbjct: 10  VGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKR 69

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           ALK  KR++GTH+RAK KREE+ +V+   R A
Sbjct: 70  ALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 101

>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)|
          Length = 115

 Score =  102 bits (253), Expect = 1e-21
 Identities = 54/104 (51%), Positives = 68/104 (65%), Gaps = 10/104 (9%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKG----------TKRVHFVRSLIREVAGFAPYEKRIT 447
           +G+NKGH  +K        D+K KG          T+   F+R L+REV G APYEKR  
Sbjct: 9   IGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTM 68

Query: 446 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAGT 315
           ELLKV KDKRALK  KR+LGTH RAK+KREE+S++L ++R A T
Sbjct: 69  ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRKAQT 112

>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)|
          Length = 105

 Score = 99.0 bits (245), Expect = 9e-21
 Identities = 49/92 (53%), Positives = 66/92 (71%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           VG+NKGH  T R + PR S  KG  +KR  FVR +++EVAG APYE+R+ ELL+  KDKR
Sbjct: 13  VGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKR 72

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRSA 321
           A K+AK++LGT  RAK+K +E+  V+ + R A
Sbjct: 73  ARKLAKKRLGTFGRAKRKVDELQRVIAESRRA 104

>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)|
          Length = 99

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 46/89 (51%), Positives = 67/89 (75%)
 Frame = -3

Query: 593 GINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRA 414
           G+NKG   T +E+ P+ S RKG  ++R  FVRS+++EVAG APYE+R+ EL++   +KRA
Sbjct: 9   GVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRA 68

Query: 413 LKVAKRKLGTHKRAKKKREEMSSVLRKMR 327
            K+AK++LGTHKRA +K EEM+ V+ + R
Sbjct: 69  KKLAKKRLGTHKRALRKVEEMTQVIAESR 97

>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)|
          Length = 99

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 42/90 (46%), Positives = 64/90 (71%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           +G+NKG  VT+    P+ S +KG  + R  FVRSL+RE+AG +PYE+R+ +L++   +KR
Sbjct: 8   IGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKR 67

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 327
           A KVAK++LG+  RAK K EEM++++   R
Sbjct: 68  ARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)|
          Length = 99

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 42/90 (46%), Positives = 63/90 (70%)
 Frame = -3

Query: 596 VGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKR 417
           +G+NKG  VT     P+ S +KG  + R  FVRSL+RE+AG +PYE+R+ +L++   +KR
Sbjct: 8   IGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKR 67

Query: 416 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 327
           A KVAK++LG+  RAK K EEM++++   R
Sbjct: 68  ARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97

>ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)|
          Length = 178

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 295 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNFRFATFRARLSLPTLRSSVIRFSY 465
           + +  +P   +    R LD+S+L  LA  W P  +F      L+L  +R S+    +
Sbjct: 114 FLYRHMPALENYFHYRNLDVSTLKELAARWAPELKFKKGSTHLALDDIRESIAELRF 170

>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 470 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 348
           A Y K + + LK  K+KR  K+AKR+  +  RA + + E S
Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247

>ORN_PASMU (P57885) Oligoribonuclease (EC 3.1.-.-)|
          Length = 184

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 295 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 465
           + F  +P  AD    R LD+S+L  LA  W P+    F      L+L  +R S+   +Y
Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELASRWKPDVLKGFTKKNTHLALDDIRESIAELAY 173

>SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-four homolog)|
          Length = 454

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -3

Query: 482 VAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 318
           +    P E+R  +++ + + KR  + +   +    +  K+ EEM  ++RK++ AG
Sbjct: 371 INSMTPEERRNPKIINMSRKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKLQKAG 425

>ORN_MANSM (Q65SE1) Oligoribonuclease (EC 3.1.-.-)|
          Length = 186

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 295 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 465
           + F  +P  AD    R LD+S+L  LA  W P     F      L+L  +R S+   +Y
Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELARRWKPELLNGFEKKNTHLALDDIRESIAELAY 173

>LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa autoantigen|
           D1) (64 kDa autoantigen 1D) (64 kDa autoantigen 1D3)
           (Thyroid-associated ophthalmopathy autoantigen) (Smooth
           muscle leiomodin) (SM-Lmod)
          Length = 572

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 30/117 (25%)
 Frame = -3

Query: 593 GINKGHVVTKRELPPRPSDRKGKGTKRVHFVRSLIRE------VAGFAPYEKRI------ 450
           G  +G   +K+ L PR +   GK  KR    +S  R+       +G  P E++I      
Sbjct: 73  GQERGRDASKKALGPRRNSDLGKEPKRGGLKKSFSRDRDEAGGKSGEKPKEEKIIRGIDK 132

Query: 449 ------TELLKVGKD----KRALKVAK--------RKLGTHKRAKKKREEMSSVLRK 333
                  +  + GKD    +RA+   K        R  G  +   KKREEM  V +K
Sbjct: 133 GRVRAAVDKKEAGKDGRGEERAVATKKEEEKKGGDRNTGLSRDKDKKREEMKEVAKK 189

>S29A1_HUMAN (Q99808) Equilibrative nucleoside transporter 1 (Equilibrative|
           nitrobenzylmercaptopurine riboside-sensitive nucleoside
           transporter) (Equilibrative NBMPR-sensitive nucleoside
           transporter) (Nucleoside transporter, es-type) (Solute
           carrier famil
          Length = 455

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 135 LAFTLFSWFAFSLSVSFMWHSLPGLGLQWL 46
           L F +F W   SL+  FMW   PG   +WL
Sbjct: 334 LTFNIFDWLGRSLTAVFMW---PGKDSRWL 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,130,751
Number of Sequences: 219361
Number of extensions: 1757845
Number of successful extensions: 5792
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5781
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)