ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6p08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467308.1| Oryza sativa (japonica cultivar-group), mRNA 141 3e-30
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
3dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
4gb|BT017566.1| Zea mays clone EL01N0426A11.c mRNA sequence 105 2e-19
5gb|AC006403.4| Arabidopsis thaliana chromosome 2 clone T28I24 ma... 44 0.59
6gb|AC113272.11| Mus musculus chromosome 1, clone RP23-379C24, co... 42 2.3
7emb|AL669841.7| Human DNA sequence from clone RP11-490E15 on chr... 42 2.3
8dbj|AK042812.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 42 2.3
9gb|AC079028.11|AC079028 Arabidopsis thaliana chromosome 1 BAC T3... 42 2.3
10gb|AC114547.12| Mus musculus chromosome 8, clone RP24-68M15, com... 42 2.3
11emb|CT030656.7| Mouse DNA sequence from clone RP23-271O7 on chro... 42 2.3
12emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chr... 42 2.3
13gb|AC149064.3| Mus musculus BAC clone RP23-140I7 from 18, comple... 42 2.3
14ref|XM_462933.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.2
15gb|AC005574.1| Homo sapiens chromosome 5, BAC clone 120c13 (LBNL... 40 9.2
16gb|AC084767.11| Oryza sativa (japonica cultivar-group) chromosom... 40 9.2
17ref|NG_003849.1| Rattus norvegicus olfactory receptor pseudogene... 40 9.2
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.2
19gb|BC031509.1| Mus musculus ring finger protein 31, mRNA (cDNA c... 40 9.2
20emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chr... 40 9.2
21gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome... 40 9.2
22gb|AC111647.10| Rattus norvegicus 4 BAC CH230-103E9 (Children's ... 40 9.2
23emb|BX537251.10| Zebrafish DNA sequence from clone DKEY-249G23 i... 40 9.2
24gb|AC114876.2| Homo sapiens chromosome 3 clone RP11-728B21, comp... 40 9.2
25dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 40 9.2
26dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, co... 40 9.2
27gb|AC092502.2| Homo sapiens chromosome 3 clone RP11-204J18, comp... 40 9.2
28dbj|AK157962.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 9.2
29dbj|AK156320.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 9.2
30gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 9.2
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
32dbj|AB189739.1| Dugesia japonica mRNA for H+/K+-ATPase alpha sub... 40 9.2
33dbj|AK131160.1| Mus musculus premature mRNA for mFLJ00217 protein 40 9.2
34gb|BC057595.1| Mus musculus ring finger protein 31, mRNA (cDNA c... 40 9.2
35gb|AF060195.1|AF060195 Mus musculus proteasome regulator PA28 be... 40 9.2
36dbj|AP002360.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.2
37gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome... 40 9.2
38ref|NM_194346.2| Mus musculus ring finger protein 31 (Rnf31), mRNA 40 9.2
39emb|AL121819.6|CNS01DSL Human chromosome 14 DNA sequence BAC C-3... 40 9.2
40gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 9.2
41gb|AC134050.2| Homo sapiens chromosome 3 clone RP11-624D20, comp... 40 9.2 
>ref|XM_467308.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2319

 Score =  141 bits (71), Expect = 3e-30
 Identities = 163/191 (85%), Gaps = 2/191 (1%)
 Strand = Plus / Minus

                                                                        
Query: 354  ctacgtcctcacttcgactatatctccatccttgagctcagtttgaggcagcacgagtag 413
            |||| |||||||||| |||||||| |||||||||||||| || || |||| ||| ||| |
Sbjct: 2319 ctacatcctcacttcaactatatccccatccttgagctcggtctggggcaacacaagttg 2260

                                                                        
Query: 414  gccattgacccataggagcttcccatccacgcccaatcttctacccggcgtcagcccgct 473
            |||||| ||||| || |||||||| || ||||||| ||||||| | | | |||||  |||
Sbjct: 2259 gccattaacccaaagcagcttcccttcaacgcccattcttctagcag-catcagcg-gct 2202

                                                                        
Query: 474  gtgctgccagtactcatcctcattatcttcccatacggccagcagatgatggccacctcg 533
            ||||||||    |||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 2201 gtgctgcctaggctcatcctcattatcttcccgtacggccagcagatgatggccacctca 2142

                       
Query: 534  cgaagaattgg 544
            ||||| |||||
Sbjct: 2141 cgaaggattgg 2131



 Score =  127 bits (64), Expect = 5e-26
 Identities = 74/76 (97%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                        
Query: 600  acttgctcctcccattgaagcattgtcctgagcaaatgaacctttattgttgatgggatc 659
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2075 acttgctcctcccattgaagcattgtcctgagcaaatgaacc-ttattgttgatgggatc 2017

                            
Query: 660  actcaagggagtagag 675
            |||||| |||||||||
Sbjct: 2016 actcaatggagtagag 2001
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 3e-30
 Identities = 163/191 (85%), Gaps = 2/191 (1%)
 Strand = Plus / Minus

                                                                            
Query: 354      ctacgtcctcacttcgactatatctccatccttgagctcagtttgaggcagcacgagtag 413
                |||| |||||||||| |||||||| |||||||||||||| || || |||| ||| ||| |
Sbjct: 28785400 ctacatcctcacttcaactatatccccatccttgagctcggtctggggcaacacaagttg 28785341

                                                                            
Query: 414      gccattgacccataggagcttcccatccacgcccaatcttctacccggcgtcagcccgct 473
                |||||| ||||| || |||||||| || ||||||| ||||||| | | | |||||  |||
Sbjct: 28785340 gccattaacccaaagcagcttcccttcaacgcccattcttctagcag-catcagcg-gct 28785283

                                                                            
Query: 474      gtgctgccagtactcatcctcattatcttcccatacggccagcagatgatggccacctcg 533
                ||||||||    |||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 28785282 gtgctgcctaggctcatcctcattatcttcccgtacggccagcagatgatggccacctca 28785223

                           
Query: 534      cgaagaattgg 544
                ||||| |||||
Sbjct: 28785222 cgaaggattgg 28785212



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                           
Query: 600      acttgctcctcccattgaagcattgtcctgagcaaatgaacct 642
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28785156 acttgctcctcccattgaagcattgtcctgagcaaatgaacct 28785114



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 643      ttattgttgatgggatcactcaagggagtagag 675
                ||||||||||||||||||||||| |||||||||
Sbjct: 28784928 ttattgttgatgggatcactcaatggagtagag 28784896
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>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0459B01
          Length = 163087

 Score =  141 bits (71), Expect = 3e-30
 Identities = 163/191 (85%), Gaps = 2/191 (1%)
 Strand = Plus / Minus

                                                                          
Query: 354    ctacgtcctcacttcgactatatctccatccttgagctcagtttgaggcagcacgagtag 413
              |||| |||||||||| |||||||| |||||||||||||| || || |||| ||| ||| |
Sbjct: 101973 ctacatcctcacttcaactatatccccatccttgagctcggtctggggcaacacaagttg 101914

                                                                          
Query: 414    gccattgacccataggagcttcccatccacgcccaatcttctacccggcgtcagcccgct 473
              |||||| ||||| || |||||||| || ||||||| ||||||| | | | |||||  |||
Sbjct: 101913 gccattaacccaaagcagcttcccttcaacgcccattcttctagcag-catcagcg-gct 101856

                                                                          
Query: 474    gtgctgccagtactcatcctcattatcttcccatacggccagcagatgatggccacctcg 533
              ||||||||    |||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct: 101855 gtgctgcctaggctcatcctcattatcttcccgtacggccagcagatgatggccacctca 101796

                         
Query: 534    cgaagaattgg 544
              ||||| |||||
Sbjct: 101795 cgaaggattgg 101785



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                         
Query: 600    acttgctcctcccattgaagcattgtcctgagcaaatgaacct 642
              |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101729 acttgctcctcccattgaagcattgtcctgagcaaatgaacct 101687



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                               
Query: 643    ttattgttgatgggatcactcaagggagtagag 675
              ||||||||||||||||||||||| |||||||||
Sbjct: 101501 ttattgttgatgggatcactcaatggagtagag 101469
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>gb|BT017566.1| Zea mays clone EL01N0426A11.c mRNA sequence
          Length = 1213

 Score =  105 bits (53), Expect = 2e-19
 Identities = 145/173 (83%), Gaps = 2/173 (1%)
 Strand = Plus / Minus

                                                                       
Query: 360 cctcacttcgactatatctccatccttgagctcagtttgaggcagcacgagtaggccatt 419
           ||||||||| |||||||| |||||||| ||||| ||||| |||||||| ||| |||||||
Sbjct: 922 cctcacttcaactatatccccatcctttagctctgtttggggcagcactagttggccatt 863

                                                                       
Query: 420 gacccataggagcttcccatccacgcccaatcttctacccggcgtcagcccgctgtgctg 479
            ||||| || |||||||| || ||||||| ||||||| | | |||||||  |||||||| 
Sbjct: 862 aacccagagcagcttcccttcgacgcccattcttctagcag-cgtcagca-gctgtgcta 805

                                                                
Query: 480 ccagtactcatcctcattatcttcccatacggccagcagatgatggccacctc 532
           ||||| ||||| ||||| ||||| ||||  |||||| | || |||||||||||
Sbjct: 804 ccagtgctcattctcataatcttgccattaggccagaatattatggccacctc 752



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 94/109 (86%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                       
Query: 566 gagacttctctctgctaccgatgctcgacggcgtacttgctcctcccattgaagcattgt 625
           ||||||| ||||||| |  ||||| | |||||| ||||||||||||||||||||||| ||
Sbjct: 718 gagacttttctctgccaaagatgcgccacggcgaacttgctcctcccattgaagcatggt 659

                                                            
Query: 626 cctgagcaaatgaacctttattgttgatgggatcactcaagggagtaga 674
            ||||||||||| ||| |||||||||||||| || || || ||||||||
Sbjct: 658 tctgagcaaatgcacc-ttattgttgatggggtcgcttaatggagtaga 611
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>gb|AC006403.4| Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete
             sequence
          Length = 79555

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 36    tacatattactcttttttcttt 57
             ||||||||||||||||||||||
Sbjct: 70067 tacatattactcttttttcttt 70088
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>gb|AC113272.11| Mus musculus chromosome 1, clone RP23-379C24, complete sequence
          Length = 170622

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 214   ttttccatttccacagatgga 234
             |||||||||||||||||||||
Sbjct: 67154 ttttccatttccacagatgga 67134
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>emb|AL669841.7| Human DNA sequence from clone RP11-490E15 on chromosome 10 Contains
            part of the gene for a novel protein (KIAA0934) and a
            novel gene, complete sequence
          Length = 29877

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 271  aatattcttttgcattttgca 291
            |||||||||||||||||||||
Sbjct: 9363 aatattcttttgcattttgca 9383
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>dbj|AK042812.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:A730026I20
           product:unclassifiable, full insert sequence
          Length = 1292

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 214 ttttccatttccacagatgga 234
           |||||||||||||||||||||
Sbjct: 930 ttttccatttccacagatgga 910
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>gb|AC079028.11|AC079028 Arabidopsis thaliana chromosome 1 BAC T32O22 genomic sequence, complete
             sequence
          Length = 50349

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 273   tattcttttgcattttgcatc 293
             |||||||||||||||||||||
Sbjct: 40605 tattcttttgcattttgcatc 40625
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>gb|AC114547.12| Mus musculus chromosome 8, clone RP24-68M15, complete sequence
          Length = 182611

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    ttgtacatattactctttttt 53
             |||||||||||||||||||||
Sbjct: 10469 ttgtacatattactctttttt 10489
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>emb|CT030656.7| Mouse DNA sequence from clone RP23-271O7 on chromosome 9, complete
             sequence
          Length = 215427

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 72    tacatatattactcagtacag 92
             |||||||||||||||||||||
Sbjct: 77119 tacatatattactcagtacag 77099
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>emb|AL928597.19| Mouse DNA sequence from clone RP23-373N5 on chromosome 4, complete
              sequence
          Length = 163961

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 480    ccagtactcatcctcattatcttcc 504
              ||||||| |||||||||||||||||
Sbjct: 112146 ccagtacacatcctcattatcttcc 112122
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>gb|AC149064.3| Mus musculus BAC clone RP23-140I7 from 18, complete sequence
          Length = 183953

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 212   tattttccatttccacagatg 232
             |||||||||||||||||||||
Sbjct: 77721 tattttccatttccacagatg 77701
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>ref|XM_462933.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 414

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 508 acggccagcagatgatggcc 527
           ||||||||||||||||||||
Sbjct: 290 acggccagcagatgatggcc 309
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>gb|AC005574.1| Homo sapiens chromosome 5, BAC clone 120c13 (LBNL H171), complete
             sequence
          Length = 33740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    tattactcttttttctttac 59
             ||||||||||||||||||||
Sbjct: 28777 tattactcttttttctttac 28796
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>gb|AC084767.11| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0057P11
              map R606A, complete sequence
          Length = 163580

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 508    acggccagcagatgatggcc 527
              ||||||||||||||||||||
Sbjct: 105191 acggccagcagatgatggcc 105210
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>ref|NG_003849.1| Rattus norvegicus olfactory receptor pseudogene 1268 (Olr1268-ps)
           on chromosome 8
          Length = 1089

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 211 ttattttccatttccacaga 230
           ||||||||||||||||||||
Sbjct: 69  ttattttccatttccacaga 88
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 508      acggccagcagatgatggcc 527
                ||||||||||||||||||||
Sbjct: 20026822 acggccagcagatgatggcc 20026803
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>gb|BC031509.1| Mus musculus ring finger protein 31, mRNA (cDNA clone IMAGE:3661778),
            with apparent retained intron
          Length = 2860

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 176  acaacaccttg-ttactccctgcctgcttcct 206
            ||||||||||| || |||||||||||||||||
Sbjct: 1157 acaacaccttggttcctccctgcctgcttcct 1188
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>emb|CT025679.5| Mouse DNA sequence from clone RP24-296K22 on chromosome 14, complete
             sequence
          Length = 160805

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 176   acaacaccttg-ttactccctgcctgcttcct 206
             ||||||||||| || |||||||||||||||||
Sbjct: 29454 acaacaccttggttcctccctgcctgcttcct 29485
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>gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome 5, complete sequence
          Length = 186986

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   actccctgcctgcttccttc 208
             ||||||||||||||||||||
Sbjct: 75607 actccctgcctgcttccttc 75588
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>gb|AC111647.10| Rattus norvegicus 4 BAC CH230-103E9 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 232538

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 299   tatcaatgagccaatctgatcaat 322
             |||||||||||| |||||||||||
Sbjct: 41715 tatcaatgagcccatctgatcaat 41692
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>emb|BX537251.10| Zebrafish DNA sequence from clone DKEY-249G23 in linkage group 9,
              complete sequence
          Length = 169308

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    attttccatttccacagatg 232
              ||||||||||||||||||||
Sbjct: 124302 attttccatttccacagatg 124283
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>gb|AC114876.2| Homo sapiens chromosome 3 clone RP11-728B21, complete sequence
          Length = 171697

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    tattcttttgcattttgcat 292
              ||||||||||||||||||||
Sbjct: 168259 tattcttttgcattttgcat 168278
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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 644    tattgttgatgggatcactcaagg 667
              ||||||||||| ||||||||||||
Sbjct: 726622 tattgttgatgcgatcactcaagg 726645
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>dbj|AB053120.1| Mus musculus DNA, proteasome activator genes, complete cds
          Length = 34849

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 176   acaacaccttg-ttactccctgcctgcttcct 206
             ||||||||||| || |||||||||||||||||
Sbjct: 23694 acaacaccttggttcctccctgcctgcttcct 23725
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>gb|AC092502.2| Homo sapiens chromosome 3 clone RP11-204J18, complete sequence
          Length = 156583

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 408    gagtaggccattgacccata 427
              ||||||||||||||||||||
Sbjct: 130034 gagtaggccattgacccata 130015
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>dbj|AK157962.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930012D15 product:ring finger protein 31,
            full insert sequence
          Length = 3294

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 176  acaacaccttg-ttactccctgcctgcttcct 206
            ||||||||||| || |||||||||||||||||
Sbjct: 1506 acaacaccttggttcctccctgcctgcttcct 1537
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>dbj|AK156320.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830016G16 product:ring finger protein 31,
            full insert sequence
          Length = 3466

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 176  acaacaccttg-ttactccctgcctgcttcct 206
            ||||||||||| || |||||||||||||||||
Sbjct: 1545 acaacaccttggttcctccctgcctgcttcct 1576
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     attgtacatatattactcag 87
              ||||||||||||||||||||
Sbjct: 474025 attgtacatatattactcag 474044
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 508      acggccagcagatgatggcc 527
                ||||||||||||||||||||
Sbjct: 20019850 acggccagcagatgatggcc 20019831
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>dbj|AB189739.1| Dugesia japonica mRNA for H+/K+-ATPase alpha subunit, partial cds
          Length = 990

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 362 tcacttcgactatatctcca 381
           ||||||||||||||||||||
Sbjct: 289 tcacttcgactatatctcca 270
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>dbj|AK131160.1| Mus musculus premature mRNA for mFLJ00217 protein
          Length = 4939

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 176  acaacaccttg-ttactccctgcctgcttcct 206
            ||||||||||| || |||||||||||||||||
Sbjct: 996  acaacaccttggttcctccctgcctgcttcct 1027
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>gb|BC057595.1| Mus musculus ring finger protein 31, mRNA (cDNA clone MGC:67171
            IMAGE:6811051), complete cds
          Length = 3443

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 176  acaacaccttg-ttactccctgcctgcttcct 206
            ||||||||||| || |||||||||||||||||
Sbjct: 1462 acaacaccttggttcctccctgcctgcttcct 1493
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>gb|AF060195.1|AF060195 Mus musculus proteasome regulator PA28 beta subunit gene, complete
            cds
          Length = 14089

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                            
Query: 176  acaacaccttg-ttactccctgcctgcttcct 206
            ||||||||||| || |||||||||||||||||
Sbjct: 1576 acaacaccttggttcctccctgcctgcttcct 1545
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>dbj|AP002360.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-111M22, complete
              sequences
          Length = 173379

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     tgtacatattactctttttt 53
              ||||||||||||||||||||
Sbjct: 130270 tgtacatattactctttttt 130251
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>gb|AC174678.2| Mus musculus BAC clone RP23-11O22 from chromosome 14, complete sequence
          Length = 224638

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 176   acaacaccttg-ttactccctgcctgcttcct 206
             ||||||||||| || |||||||||||||||||
Sbjct: 65507 acaacaccttggttcctccctgcctgcttcct 65476
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>ref|NM_194346.2| Mus musculus ring finger protein 31 (Rnf31), mRNA
          Length = 3443

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                            
Query: 176  acaacaccttg-ttactccctgcctgcttcct 206
            ||||||||||| || |||||||||||||||||
Sbjct: 1462 acaacaccttggttcctccctgcctgcttcct 1493
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>emb|AL121819.6|CNS01DSL Human chromosome 14 DNA sequence BAC C-3201O4 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 143883

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   atgagccaatctgatcaatt 323
             ||||||||||||||||||||
Sbjct: 45773 atgagccaatctgatcaatt 45792
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     ctcttttttctttacaggca 64
              ||||||||||||||||||||
Sbjct: 927211 ctcttttttctttacaggca 927192
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>gb|AC134050.2| Homo sapiens chromosome 3 clone RP11-624D20, complete sequence
          Length = 41735

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 273   tattcttttgcattttgcat 292
             ||||||||||||||||||||
Sbjct: 38173 tattcttttgcattttgcat 38154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,015,824
Number of Sequences: 3902068
Number of extensions: 6015824
Number of successful extensions: 123675
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 123489
Number of HSP's gapped (non-prelim): 194
length of query: 676
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 653
effective length of database: 17,143,297,704
effective search space: 11194573400712
effective search space used: 11194573400712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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