ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal20h02 |
|---|---|
| Clone Library Name | barley_pub |
>UBXD1_HUMAN (Q9BZV1) UBX domain-containing protein 1| Length = 441 Score = 54.7 bits (130), Expect = 9e-08 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Frame = -2 Query: 414 KVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASLGGI-EFLELCGFEKPEGE 238 +VK T+ Y+ N+ +P+EEK+RKI+L N FQER+ L G EF E GF+K Sbjct: 170 RVKLGVDTIAKYLDNIHLHPEEEKYRKIKLQNKVFQERINCLEGTHEFFEAIGFQK---- 225 Query: 237 EILFLARDKVD 205 +L A+D+ D Sbjct: 226 -VLLPAQDQED 235
>UBXD1_MOUSE (Q99PL6) UBX domain-containing protein 1| Length = 442 Score = 52.0 bits (123), Expect = 6e-07 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 8/111 (7%) Frame = -2 Query: 414 KVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASL-GGIEFLELCGFEK---- 250 +VK T+ Y+ N+ +P+EEK++KI+L N FQER+ L G EF E GF+K Sbjct: 170 RVKLGVDTIAKYLDNIHLHPEEEKYQKIKLQNKVFQERINCLEGSHEFFEAIGFKKVTLP 229 Query: 249 ---PEGEEILFLARDKVDKAVLNVAGAELNSAITNPFFGVL*NREIPVVAP 106 EG+E ++ + N+A + P L +R++ V P Sbjct: 230 VPDQEGQEEFYVLGEDARAQPQNLARHKQQLLDAEPVRATL-DRQLRVFRP 279
>RNY1_DEBHA (Q6BHB1) Ribonuclease T2-like precursor (EC 3.1.27.1) (RNase| T2-like) Length = 403 Score = 30.4 bits (67), Expect = 1.7 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +1 Query: 109 GYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQ 225 GY GNF+ D+E + GDG+ I DG + P Q Sbjct: 361 GYGGNFAWCLDTEHKHGDGKTAQTPIKISDGQCDSFPVQ 399
>RS15A_SCHPO (O94715) 40S ribosomal protein S15-A| Length = 153 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 89 RRRIFKGATTGISRF*RTPKKGLVMAELSSAPATFRTALSTL 214 RRR+ +G SRF R +K A L+ PAT +T L + Sbjct: 50 RRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNM 91
>XPP2_HUMAN (O43895) Xaa-Pro aminopeptidase 2 precursor (EC 3.4.11.9) (X-Pro| aminopeptidase 2) (Membrane-bound aminopeptidase P) (Membrane-bound APP) (Membrane-bound AmP) (mAmP) (Aminoacylproline aminopeptidase) Length = 674 Score = 29.3 bits (64), Expect = 3.8 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +1 Query: 121 NFSVLEDSEER--IGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYASKA 294 ++S + DS + +GD R+ +G+SY G ++P +K T+ P + K + Sbjct: 304 DYSQVRDSIQAYSLGDVRIWIGTSYTMYGIYEMIPKEKLVTDTY---SPVMMTKAVKNSK 360 Query: 295 RNSLLECS 318 +LL+ S Sbjct: 361 EQALLKAS 368
>TEA1_SCHPO (P87061) Tip elongation aberrant protein 1 (Cell polarity protein| tea1) Length = 1147 Score = 29.3 bits (64), Expect = 3.8 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Frame = -2 Query: 366 VKNPDEEKFRKIRLTNATFQERVASLGGIEFLELCGFEKPEGEEILFLARDKVDKAV--L 193 VK DE K R+T+ T + V + ++ + K + EIL + K+D L Sbjct: 571 VKTVDERKSLDGRITSVTLETLVEKYSELSKQQIVEWFKSKLYEILRDSASKIDSLTEKL 630 Query: 192 NVAGAELNSAI 160 VA AE N+A+ Sbjct: 631 KVANAEKNAAL 641
>FBX38_HUMAN (Q6PIJ6) F-box only protein 38 (Modulator of KLF7 activity homolog)| (MoKA) Length = 1188 Score = 29.3 bits (64), Expect = 3.8 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 127 RNSRCSPFENPSSNRECVTN 68 R SRCS E PS++R CV N Sbjct: 787 RTSRCSDEERPSTSRACVVN 806
>RS15B_SCHPO (Q9UTQ6) 40S ribosomal protein S15-B| Length = 154 Score = 29.3 bits (64), Expect = 3.8 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 89 RRRIFKGATTGISRF*RTPKKGLVMAELSSAPATFRTALSTL 214 RRR+ +G SRF R +K A L+ PAT +T L + Sbjct: 51 RRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNM 92
>DNAK_RHOS4 (Q3IYM7) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 636 Score = 29.3 bits (64), Expect = 3.8 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 10/96 (10%) Frame = +1 Query: 133 LEDSEERIGDGRVELGSSY---IQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYASKARNS 303 L+ +E ++EL SS I F+++ Q L L A+L+ L + S Sbjct: 253 LQRLKEAAEKAKIELSSSQQTEINQPFISMDRNTGQPLHMVMKLTRAKLESLVGDLIKKS 312 Query: 304 LLECS-------IGKSDLSEFLLVGVFNHVSDVGKE 390 L C + KSD+ E +LVG + V +E Sbjct: 313 LKPCEAALKDAGVSKSDIDEVVLVGGMTRMPRVVEE 348
>NCAP_IBVBU (P69598) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 5.0 Identities = 22/70 (31%), Positives = 30/70 (42%) Frame = +1 Query: 106 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 285 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 286 SKARNSLLEC 315 +++ C Sbjct: 299 RFEFTTVVPC 308
>NCAP_IBVBC (P69597) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 5.0 Identities = 22/70 (31%), Positives = 30/70 (42%) Frame = +1 Query: 106 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 285 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 286 SKARNSLLEC 315 +++ C Sbjct: 299 RFEFTTVVPC 308
>NCAP_IBVB (P69596) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 5.0 Identities = 22/70 (31%), Positives = 30/70 (42%) Frame = +1 Query: 106 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 285 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 286 SKARNSLLEC 315 +++ C Sbjct: 299 RFEFTTVVPC 308
>MSRA_THEVU (Q9AJF7) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 123 Score = 28.9 bits (63), Expect = 5.0 Identities = 27/103 (26%), Positives = 44/103 (42%) Frame = -2 Query: 414 KVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASLGGIEFLELCGFEKPEGEE 235 +V T + Y+G +NP E+ T+ T V +E+ E+ EE Sbjct: 18 QVPGVIDTAVGYMGGTTENPTYEEV----CTDKTGHAEVVQ---VEYDP----EQVSYEE 66 Query: 234 ILFLARDKVDKAVLNVAGAELNSAITNPFFGVL*NREIPVVAP 106 +L + D + LN G ++ + I FF L ++EIP P Sbjct: 67 LLNVFWDNHNPTTLNRQGPDVGTNIARLFFTTLKSKEIPQKNP 109
>SYE_BACSK (Q5WLT5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 485 Score = 28.5 bits (62), Expect = 6.6 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%) Frame = -2 Query: 372 NVVKNPDEEKFRKIRLTNATFQERVASLGG-----IEFLELCGFEKPEGEEILFLARDKV 208 +++ NPD +K K + F E+ SLG + FL L G+ P GEE +F + Sbjct: 244 SLILNPDRQKMSKRDESIIQFVEQYKSLGYMPEAIVNFLALLGW-SPVGEEEIFSLEELC 302 Query: 207 DKAVLN 190 ++ L+ Sbjct: 303 EQFTLD 308
>FTSZ3_PYRAB (Q9V0H5) Cell division protein ftsZ homolog 3| Length = 365 Score = 28.5 bits (62), Expect = 6.6 Identities = 18/80 (22%), Positives = 38/80 (47%) Frame = -2 Query: 414 KVKRAFQTLLTYIGNVVKNPDEEKFRKIRLTNATFQERVASLGGIEFLELCGFEKPEGEE 235 K+ + +++ N +K DE+ + N T ER+ASL + +++ G + + + Sbjct: 150 KLSKVVDSIIAIDNNKLKESDEDISQAYERINYTIVERIASL--LALIDVPGEQTLDASD 207 Query: 234 ILFLARDKVDKAVLNVAGAE 175 + F+ R A + A A+ Sbjct: 208 LKFVLRAMGSFATVGYAKAD 227
>RNC_SPICI (Q53844) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 248 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = -2 Query: 300 VASLGGIEFLELCGFEKPEGEEILFLARDKVDK 202 VA +GGI + E CG+ E E++ ARD + K Sbjct: 207 VAEIGGIRYGEGCGYTHKEAEQL--AARDALQK 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,928,705 Number of Sequences: 219361 Number of extensions: 1178463 Number of successful extensions: 3483 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3418 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3483 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
